IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

PPIA, up, 220/234(94%) IGFBP3, down, 42/74(57%) RALA, 0.53%, 1/189 INHBA, 2.66%, 5/188 GLI3, 100.00%, 1/1 GCK, 0.53%, 1/189

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-0.94,p=2.54e-11 SFRP4,FC=0.64,p=7.97e-06 AMPH,FC=0.23,p=0.374984059 VPS41,FC=-0.22,p=0.319627031 RALA,FC=0.36,p=0.002549756 RALA,FC=0.24,p=0.040946533 RALA,FC=0.20,p=0.157110507 CDC2L5,FC=0.37,p=0.002354612 CDC2L5,FC=-0.05,p=0.536160378 CDC2L5,FC=0.52,p=0.003987761 CDC2L5,FC=0.24,p=0.000712379 INHBA,FC=0.25,p=0.157780719 INHBA,FC=0.98,p=3.83e-06 GLI3,FC=-0.09,p=0.619574309 PSMA2,FC=-0.22,p=0.091884464 PSMA2,FC=0.18,p=0.074044691 HECW1,FC=-0.05,p=0.838375462 STK17A,FC=-0.12,p=0.509327597 STK17A,FC=-0.01,p=0.936300135 C7orf44,FC=0.67,p=2.08e-17 BLVRA,FC=-0.02,p=0.890900767 PGAM2,FC=0.27,p=0.202740696 AEBP1,FC=0.04,p=0.850603403 POLD2,FC=0.52,p=0.000725303 MYL7,FC=0.20,p=0.268701141 GCK,FC=0.26,p=0.005212286 YKT6,FC=0.42,p=0.07465134 YKT6,FC=0.66,p=0.002542404 CAMK2B,FC=0.15,p=0.179726837 CAMK2B,FC=0.15,p=0.02864702 NUDCD3,FC=0.07,p=0.645608217 OGDH,FC=-0.37,p=1.47e-05 ZMIZ2,FC=1.19,p=5.15e-08 PPIA,FC=0.19,p=0.000929955 H2AFV,FC=0.71,p=2.45e-10 H2AFV,FC=-0.59,p=5.7e-09 NACAD,FC=-0.57,p=3.76e-05 RAMP3,FC=-1.65,p=7.21e-46 ADCY1,FC=0.09,p=0.321217578 ADCY1,FC=-0.17,p=0.36112454 IGFBP1,FC=0.10,p=0.553743839 IGFBP3,FC=1.63,p=1.19e-11 IGFBP3,FC=1.56,p=6.93e-11 HUS1,FC=0.25,p=0.167579361 UPP1,FC=0.17,p=0.254526614

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-0.91,p=2.93e-11 SFRP4,FC=0.65,p=0.001336591 AMPH,FC=0.03,p=0.918260158 VPS41,FC=-0.56,p=0.07849553 RALA,FC=0.78,p=4.72e-06 RALA,FC=0.76,p=2.47e-06 RALA,FC=0.57,p=0.000791714 CDC2L5,FC=0.04,p=0.856544559 CDC2L5,FC=-0.45,p=0.021685399 CDC2L5,FC=0.63,p=0.022403929 CDC2L5,FC=0.20,p=0.02391606 INHBA,FC=0.50,p=0.034841145 INHBA,FC=1.11,p=0.002125069 GLI3,FC=0.73,p=0.011205262 PSMA2,FC=-0.21,p=0.18449469 PSMA2,FC=0.41,p=0.001478791 HECW1,FC=-0.17,p=0.61488871 STK17A,FC=-0.14,p=0.383204221 STK17A,FC=-0.07,p=0.536890361 C7orf44,FC=0.63,p=4.32e-08 BLVRA,FC=-0.39,p=0.001479861 PGAM2,FC=-0.57,p=0.042121416 AEBP1,FC=-0.35,p=0.086521026 POLD2,FC=1.00,p=3.91e-07 MYL7,FC=0.26,p=0.269647366 GCK,FC=0.29,p=0.076945902 YKT6,FC=0.61,p=0.046966216 YKT6,FC=0.42,p=0.143762317 CAMK2B,FC=0.08,p=0.602760864 CAMK2B,FC=0.15,p=0.094172467 NUDCD3,FC=0.26,p=0.195954923 OGDH,FC=-0.66,p=1.39e-08 ZMIZ2,FC=1.42,p=3.03e-06 PPIA,FC=0.25,p=0.000901854 H2AFV,FC=0.93,p=5.51e-09 H2AFV,FC=-0.64,p=1.14e-06 NACAD,FC=-0.59,p=0.010216716 RAMP3,FC=-1.82,p=1.07e-16 ADCY1,FC=-0.13,p=0.316110134 ADCY1,FC=0.04,p=0.873679172 IGFBP1,FC=-0.09,p=0.596183328 IGFBP3,FC=1.38,p=3.62e-06 IGFBP3,FC=1.55,p=1.12e-06 HUS1,FC=0.20,p=0.453392125 UPP1,FC=-0.49,p=0.014570532


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-1.09,p=7.98e-26 TXNDC3,FC=-0.49,p=1.66e-11 SFRP4,FC=0.66,p=4.64e-08 SFRP4,FC=0.78,p=4.56e-09 AMPH,FC=-0.44,p=3.37e-05 VPS41,FC=0.22,p=0.014017897 VPS41,FC=0.37,p=7.12e-13 POU6F2,FC=0.25,p=0.04840284 RALA,FC=0.16,p=0.033580979 CDC2L5,FC=0.35,p=1.11e-08 CDC2L5,FC=1.06,p=2e-17 CDC2L5,FC=0.02,p=0.637044668 C7orf10,FC=1.36,p=5.85e-15 INHBA,FC=-0.34,p=0.024226976 INHBA,FC=-0.02,p=0.876874446 GLI3,FC=-0.04,p=0.602605247 C7orf25,FC=-0.02,p=0.774597579 C7orf25,FC=-0.44,p=2.52e-07 PSMA2,FC=0.44,p=2.54e-11 PSMA2,FC=-0.38,p=7.18e-13 HECW1,FC=-0.27,p=6.22e-05 HECW1,FC=-0.22,p=7.87e-05 STK17A,FC=0.10,p=0.218950497 STK17A,FC=-0.40,p=0.011155502 STK17A,FC=-0.18,p=0.002020097 C7orf44,FC=0.30,p=2.02e-07 BLVRA,FC=0.00,p=0.964982023 BLVRA,FC=0.57,p=2.06e-07 BLVRA,FC=-0.03,p=0.704673969 URG4,FC=0.11,p=0.094497419 UBE2D4,FC=-0.31,p=1.65e-12 UBE2D4,FC=-0.04,p=0.605686917 POLR2J4,FC=0.54,p=4e-11 PGAM2,FC=0.26,p=0.026720457 POLM,FC=0.85,p=6.56e-09 AEBP1,FC=0.18,p=0.168052795 POLD2,FC=0.62,p=1.45e-18 MYL7,FC=-0.00,p=0.965651335 GCK,FC=-0.58,p=5.37e-07 YKT6,FC=1.66,p=5.12e-40 YKT6,FC=1.40,p=5.91e-36 CAMK2B,FC=0.04,p=0.803091011 CAMK2B,FC=0.07,p=0.497925476 CAMK2B,FC=-0.35,p=1.18e-11 CAMK2B,FC=0.25,p=0.08814542 NUDCD3,FC=-0.28,p=2.23e-07 NUDCD3,FC=-0.29,p=7.02e-05 NPC1L1,FC=0.52,p=0.000175448 DDX56,FC=0.41,p=1.9e-13 OGDH,FC=0.12,p=0.054314658 ZMIZ2,FC=-0.18,p=0.009299464 ZMIZ2,FC=0.71,p=1.04e-06 ZMIZ2,FC=0.54,p=2.33e-11 PPIA,FC=0.84,p=1.55e-08 H2AFV,FC=-0.79,p=5.75e-18 H2AFV,FC=-0.46,p=5.21e-12 H2AFV,FC=0.91,p=7.29e-44 NACAD,FC=-0.46,p=4.6e-05 TBRG4,FC=0.67,p=5.35e-06 RAMP3,FC=-2.32,p=8.14e-107 ADCY1,FC=-0.12,p=0.185479747 ADCY1,FC=-0.20,p=0.153519823 IGFBP1,FC=0.47,p=0.014735001 IGFBP3,FC=1.82,p=8.53e-38 IGFBP3,FC=1.51,p=8.65e-33 TNS3,FC=-1.08,p=5.6e-45 C7orf69,FC=-0.15,p=0.185614586 HUS1,FC=0.11,p=0.13645926 HUS1,FC=1.95,p=1.44e-48 HUS1,FC=0.17,p=0.091709694 UPP1,FC=0.22,p=0.073871951

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=3.06,p=4.2e-88 TXNDC3,FC=4.50,p=9.82e-134 SFRP4,FC=1.90,p=2.45e-56 SFRP4,FC=1.17,p=4.81e-38 AMPH,FC=-1.01,p=2.64e-11 VPS41,FC=2.92,p=2.27e-78 VPS41,FC=-6.26,p=4.63e-128 POU6F2,FC=2.51,p=4.24e-39 RALA,FC=-1.66,p=1.14e-43 CDC2L5,FC=0.39,p=0.000391002 CDC2L5,FC=1.76,p=3.1e-27 CDC2L5,FC=-1.56,p=1.22e-63 C7orf10,FC=1.58,p=3.64e-19 INHBA,FC=-0.01,p=0.954371724 INHBA,FC=5.68,p=2.16e-124 GLI3,FC=0.24,p=0.164378481 C7orf25,FC=-0.30,p=0.007347005 C7orf25,FC=1.19,p=1.47e-22 PSMA2,FC=0.02,p=0.737333385 PSMA2,FC=3.43,p=5.8e-166 HECW1,FC=-4.88,p=9.53e-70 HECW1,FC=0.23,p=0.050903523 STK17A,FC=-0.52,p=1.08e-05 STK17A,FC=4.00,p=6.96e-79 STK17A,FC=1.97,p=1.16e-74 C7orf44,FC=-0.98,p=1.05e-43 BLVRA,FC=-7.68,p=1.54e-187 BLVRA,FC=0.97,p=5.64e-20 BLVRA,FC=-1.36,p=1.98e-49 URG4,FC=1.86,p=1.32e-63 UBE2D4,FC=-0.68,p=1.23e-22 UBE2D4,FC=0.50,p=8.18e-14 POLR2J4,FC=1.78,p=2.39e-22 PGAM2,FC=4.73,p=1.15e-112 POLM,FC=0.07,p=0.636061137 AEBP1,FC=2.88,p=4.77e-87 POLD2,FC=-1.45,p=9.52e-62 MYL7,FC=6.69,p=2.17e-160 GCK,FC=-1.29,p=1.07e-23 YKT6,FC=-0.99,p=2.22e-10 YKT6,FC=0.93,p=2.5e-20 CAMK2B,FC=3.92,p=1.84e-82 CAMK2B,FC=3.53,p=1.59e-71 CAMK2B,FC=-1.47,p=3.61e-53 CAMK2B,FC=2.85,p=3.74e-83 NUDCD3,FC=0.65,p=7.07e-26 NUDCD3,FC=4.73,p=2.68e-147 NPC1L1,FC=2.43,p=5.19e-32 DDX56,FC=-2.33,p=7.26e-81 OGDH,FC=4.83,p=3.52e-181 ZMIZ2,FC=-1.70,p=6.81e-60 ZMIZ2,FC=0.46,p=0.000260009 ZMIZ2,FC=2.57,p=9.87e-82 PPIA,FC=2.68,p=1.43e-53 H2AFV,FC=-3.47,p=7.99e-46 H2AFV,FC=-3.19,p=7.39e-70 H2AFV,FC=0.47,p=3.1e-08 NACAD,FC=1.65,p=1.62e-25 TBRG4,FC=-3.50,p=1.63e-77 RAMP3,FC=-3.81,p=1.02e-83 ADCY1,FC=2.18,p=1.47e-44 ADCY1,FC=0.82,p=9.3e-08 IGFBP1,FC=2.59,p=1.5e-46 IGFBP3,FC=-1.25,p=1.07e-09 IGFBP3,FC=-0.82,p=1.1e-11 TNS3,FC=-3.53,p=3.14e-111 C7orf69,FC=3.93,p=3.03e-99 HUS1,FC=-3.07,p=7.2e-103 HUS1,FC=1.83,p=3.62e-21 HUS1,FC=1.76,p=4.04e-20 UPP1,FC=0.67,p=4.39e-11


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-0.70,p=3.13e-08 TXNDC3,FC=-1.57,p=6.64e-11 SFRP4,FC=0.71,p=0.000455652 SFRP4,FC=0.63,p=0.001214539 EPDR1,FC=-0.51,p=0.00206462 STARD3NL,FC=-0.12,p=0.10201402 AMPH,FC=0.28,p=0.097441624 VPS41,FC=0.27,p=0.012602807 VPS41,FC=0.35,p=1.06e-08 VPS41,FC=0.02,p=0.80821983 POU6F2,FC=1.29,p=4.71e-09 C7orf36,FC=0.39,p=6.53e-08 RALA,FC=0.34,p=0.000108176 RALA,FC=-0.43,p=2.97e-10 CDC2L5,FC=-0.40,p=0.001833744 CDC2L5,FC=0.31,p=0.033384187 CDC2L5,FC=0.17,p=0.002947558 CDC2L5,FC=0.15,p=0.404630131 C7orf11,FC=0.50,p=8.46e-11 C7orf10,FC=1.09,p=1.11e-08 INHBA,FC=-0.42,p=0.018607845 INHBA,FC=-0.44,p=0.019829285 GLI3,FC=-0.39,p=0.00637819 GLI3,FC=-0.38,p=0.095508574 GLI3,FC=-0.60,p=5.67e-08 CCND3,FC=-0.53,p=0.009588608 C7orf25,FC=-0.07,p=0.576989186 C7orf25,FC=0.11,p=0.285646579 PSMA2,FC=-0.34,p=9.1e-06 PSMA2,FC=0.26,p=3.68e-05 MRPL32,FC=0.14,p=0.046355858 HECW1,FC=0.95,p=7.92e-10 HECW1,FC=0.42,p=0.000574658 STK17A,FC=-0.23,p=0.022280105 STK17A,FC=-0.72,p=4.84e-08 STK17A,FC=-0.50,p=8.36e-08 C7orf44,FC=0.72,p=2.43e-06 C7orf44,FC=0.51,p=3.08e-13 BLVRA,FC=-0.06,p=0.471390643 BLVRA,FC=-0.16,p=0.139670229 BLVRA,FC=-0.65,p=0.000866419 MRPS24,FC=0.71,p=2.3e-22 URG4,FC=0.14,p=0.046228246 URG4,FC=1.11,p=8.21e-12 UBE2D4,FC=0.20,p=0.005997735 UBE2D4,FC=0.15,p=0.052107255 POLR2J4,FC=0.87,p=1.94e-10 SPDYE1,FC=0.05,p=0.707359195 DBNL,FC=0.29,p=0.003643952 PGAM2,FC=0.44,p=0.015126053 POLM,FC=0.45,p=0.01130783 AEBP1,FC=-0.24,p=0.118045466 POLD2,FC=0.60,p=9.06e-14 MYL7,FC=0.25,p=0.025558384 GCK,FC=-0.30,p=0.037348764 YKT6,FC=0.86,p=1.79e-08 YKT6,FC=0.75,p=5.97e-14 CAMK2B,FC=0.43,p=4.52e-05 CAMK2B,FC=0.81,p=3.49e-05 CAMK2B,FC=0.82,p=0.000504832 CAMK2B,FC=0.67,p=0.000500513 NUDCD3,FC=0.55,p=5.73e-11 NUDCD3,FC=-0.20,p=0.141439609 NUDCD3,FC=-0.12,p=0.308004392 NUDCD3,FC=0.39,p=5.53e-06 NPC1L1,FC=0.96,p=8.2e-06 NPC1L1,FC=0.22,p=0.130751509 NPC1L1,FC=-0.16,p=0.315806544 DDX56,FC=0.71,p=9.7e-20 TMED4,FC=0.21,p=0.099468055 TMED4,FC=-0.00,p=0.987790072 TMED4,FC=0.46,p=3.73e-10 OGDH,FC=-0.26,p=0.085073804 OGDH,FC=0.17,p=0.093940928 OGDH,FC=-0.43,p=0.001982015 ZMIZ2,FC=0.51,p=3.07e-06 ZMIZ2,FC=0.80,p=3.2e-11 ZMIZ2,FC=0.52,p=0.001190014 PPIA,FC=-0.05,p=0.571925839 PPIA,FC=0.11,p=0.593393648 H2AFV,FC=0.86,p=4.86e-25 H2AFV,FC=-0.54,p=1.02e-07 H2AFV,FC=-0.59,p=2.63e-16 H2AFV,FC=0.54,p=3.05e-17 PURB,FC=0.39,p=0.002529416 PURB,FC=0.30,p=0.00274339 PURB,FC=0.48,p=0.002906707 PURB,FC=-0.28,p=6.73e-06 MYO1G,FC=-1.16,p=2.26e-08 MYO1G,FC=-0.94,p=6.39e-11 C7orf40,FC=0.15,p=0.163924803 CCM2,FC=0.40,p=9.61e-07 NACAD,FC=-1.17,p=1.88e-09 TBRG4,FC=0.93,p=5.13e-08 RAMP3,FC=-2.51,p=5.47e-46 ADCY1,FC=0.07,p=0.681093619 ADCY1,FC=0.87,p=6.64e-08 ADCY1,FC=0.13,p=0.490466565 ADCY1,FC=0.02,p=0.917949412 SEPT13,FC=0.19,p=0.04119021 SEPT13,FC=-0.42,p=0.000619653 IGFBP1,FC=0.41,p=0.162062044 IGFBP3,FC=1.86,p=1.8e-27 IGFBP3,FC=1.90,p=1.43e-24 ATP5SL,FC=-1.84,p=1.86e-38 TNS3,FC=0.44,p=0.020855561 TNS3,FC=-0.68,p=6.32e-18 PKD1L1,FC=0.22,p=0.25128893 C7orf69,FC=0.15,p=0.410587047 HUS1,FC=0.14,p=0.19452623 HUS1,FC=0.52,p=1.65e-09 HUS1,FC=0.34,p=0.027016397 SUNC1,FC=0.60,p=0.008506763 C7orf57,FC=-0.83,p=0.002924035 UPP1,FC=-0.14,p=0.281535384 ABCA13,FC=-0.43,p=0.101473853 ABCA13,FC=-0.11,p=0.67532459 ABCA13,FC=-0.40,p=0.222064276

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-0.53,p=0.000141233 TXNDC3,FC=-2.40,p=6.7e-19 SFRP4,FC=0.39,p=0.110898991 SFRP4,FC=0.31,p=0.206237542 EPDR1,FC=-1.82,p=1.64e-24 STARD3NL,FC=-1.11,p=3.01e-22 AMPH,FC=0.60,p=0.000305534 VPS41,FC=0.14,p=0.147641793 VPS41,FC=0.09,p=0.145798694 VPS41,FC=-0.34,p=0.000802763 POU6F2,FC=1.29,p=3.34e-08 C7orf36,FC=0.07,p=0.360654023 RALA,FC=0.66,p=1.96e-11 RALA,FC=-0.56,p=7.89e-13 CDC2L5,FC=-0.64,p=3.85e-06 CDC2L5,FC=0.24,p=0.118901111 CDC2L5,FC=0.05,p=0.436039408 CDC2L5,FC=0.01,p=0.946654908 C7orf11,FC=0.69,p=1.1e-15 C7orf10,FC=1.04,p=9.82e-06 INHBA,FC=-0.35,p=0.112976065 INHBA,FC=-0.26,p=0.253385661 GLI3,FC=0.50,p=0.000232861 GLI3,FC=-0.33,p=0.18790554 GLI3,FC=-0.04,p=0.708600327 CCND3,FC=-1.03,p=6.79e-08 C7orf25,FC=0.02,p=0.893864403 C7orf25,FC=0.08,p=0.489085399 PSMA2,FC=-0.36,p=2.93e-05 PSMA2,FC=0.39,p=8.59e-10 MRPL32,FC=-0.21,p=0.009130994 HECW1,FC=1.38,p=4.41e-12 HECW1,FC=0.88,p=2.71e-09 STK17A,FC=-0.57,p=4.35e-07 STK17A,FC=-1.33,p=1.75e-16 STK17A,FC=-0.54,p=9.42e-09 C7orf44,FC=0.26,p=0.029166361 C7orf44,FC=0.43,p=6.39e-08 BLVRA,FC=-0.56,p=3.64e-13 BLVRA,FC=-0.83,p=1.63e-15 BLVRA,FC=-1.39,p=5.05e-10 MRPS24,FC=0.55,p=2.97e-14 URG4,FC=0.14,p=0.0592752 URG4,FC=1.33,p=5.25e-14 UBE2D4,FC=0.50,p=4.68e-09 UBE2D4,FC=-0.23,p=0.069560737 POLR2J4,FC=1.14,p=3.71e-11 SPDYE1,FC=0.04,p=0.745669858 DBNL,FC=0.69,p=8.12e-08 PGAM2,FC=-0.10,p=0.481259176 POLM,FC=0.48,p=0.016831522 AEBP1,FC=-0.00,p=0.992561727 POLD2,FC=0.93,p=5.37e-22 MYL7,FC=0.38,p=0.002906886 GCK,FC=-0.27,p=0.139508722 YKT6,FC=1.03,p=2.18e-11 YKT6,FC=0.90,p=6.3e-10 CAMK2B,FC=0.96,p=4.62e-14 CAMK2B,FC=1.23,p=2.58e-10 CAMK2B,FC=1.48,p=7.72e-11 CAMK2B,FC=0.93,p=1.14e-05 NUDCD3,FC=0.48,p=8.99e-07 NUDCD3,FC=-0.42,p=0.002702855 NUDCD3,FC=0.06,p=0.531672938 NUDCD3,FC=0.63,p=5.14e-10 NPC1L1,FC=0.80,p=0.000271814 NPC1L1,FC=0.26,p=0.164268975 NPC1L1,FC=0.06,p=0.75684085 DDX56,FC=0.88,p=1.19e-18 TMED4,FC=-0.61,p=8.31e-05 TMED4,FC=-0.04,p=0.644437506 TMED4,FC=0.05,p=0.529934871 OGDH,FC=-0.18,p=0.165789137 OGDH,FC=0.08,p=0.525797657 OGDH,FC=0.02,p=0.878807545 ZMIZ2,FC=0.11,p=0.415903702 ZMIZ2,FC=0.75,p=9.37e-09 ZMIZ2,FC=-0.03,p=0.871079323 PPIA,FC=-0.38,p=0.000157335 PPIA,FC=-0.49,p=0.032078979 H2AFV,FC=1.05,p=1.07e-25 H2AFV,FC=-0.66,p=4.16e-07 H2AFV,FC=-0.83,p=2.14e-19 H2AFV,FC=0.61,p=2.12e-16 PURB,FC=0.79,p=3.02e-05 PURB,FC=0.45,p=1.59e-05 PURB,FC=0.64,p=0.000570017 PURB,FC=0.01,p=0.850541818 MYO1G,FC=-1.72,p=9.42e-18 MYO1G,FC=-1.44,p=1.45e-20 C7orf40,FC=0.29,p=0.020017396 CCM2,FC=0.22,p=0.011211389 NACAD,FC=-0.89,p=6.29e-06 TBRG4,FC=0.89,p=4.67e-06 RAMP3,FC=-2.17,p=7.66e-24 ADCY1,FC=0.02,p=0.941051665 ADCY1,FC=1.21,p=3.89e-09 ADCY1,FC=-0.31,p=0.074417504 ADCY1,FC=-0.01,p=0.949995863 SEPT13,FC=-0.03,p=0.801756804 SEPT13,FC=-0.39,p=0.000606704 IGFBP1,FC=-0.32,p=0.223816446 IGFBP3,FC=2.31,p=1.2e-22 IGFBP3,FC=2.68,p=5e-29 ATP5SL,FC=-2.16,p=1.52e-29 TNS3,FC=0.67,p=0.001819187 TNS3,FC=-1.45,p=1.44e-23 PKD1L1,FC=1.18,p=2.78e-08 C7orf69,FC=0.10,p=0.611055614 HUS1,FC=0.04,p=0.750024753 HUS1,FC=0.58,p=2.79e-09 HUS1,FC=0.45,p=0.001399051 SUNC1,FC=-0.01,p=0.947934699 C7orf57,FC=-2.67,p=6.42e-14 UPP1,FC=-0.52,p=0.000450183 ABCA13,FC=1.39,p=3.36e-06 ABCA13,FC=1.58,p=2.3e-05 ABCA13,FC=1.84,p=3.72e-06


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SFRP4,FC=0.66,p=0.247666686 AMPH,FC=-0.89,p=0.161771161 AMPH,FC=0.74,p=0.050306075 VPS41,FC=0.08,p=0.740503888 RALA,FC=0.10,p=0.729417862 CDC2L5,FC=0.62,p=0.082645938 INHBA,FC=-0.94,p=0.041591997 GLI3,FC=-0.23,p=0.555953199 PSMA2,FC=0.26,p=0.311645888 MRPL32,FC=-0.15,p=0.677110974 STK17A,FC=0.21,p=0.370327412 STK17A,FC=0.40,p=0.239771982 BLVRA,FC=-0.07,p=0.79195873 MRPS24,FC=1.02,p=8.63e-05 PGAM2,FC=0.74,p=0.010143428 AEBP1,FC=1.15,p=0.054622716 AEBP1,FC=1.15,p=0.054622716 POLD2,FC=0.96,p=0.001097547 YKT6,FC=0.90,p=0.005526594 NPC1L1,FC=0.19,p=0.609370946 OGDH,FC=0.40,p=0.131753149 PPIA,FC=0.01,p=0.957633928 PPIA,FC=0.93,p=0.014684604 PURB,FC=0.07,p=0.871665356 ADCY1,FC=-0.07,p=0.870250029 IGFBP1,FC=-1.97,p=0.003957408 IGFBP1,FC=-0.81,p=0.321789433 IGFBP3,FC=2.37,p=3.9e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SFRP4,FC=0.71,p=0.222116544 AMPH,FC=-0.22,p=0.696267612 AMPH,FC=1.09,p=0.064754192 VPS41,FC=-0.26,p=0.319396293 RALA,FC=0.22,p=0.525313916 CDC2L5,FC=0.36,p=0.438999956 INHBA,FC=-1.32,p=0.028188162 GLI3,FC=0.16,p=0.747555199 PSMA2,FC=0.36,p=0.299329634 MRPL32,FC=0.19,p=0.636610848 STK17A,FC=0.89,p=0.006039078 STK17A,FC=0.32,p=0.297545174 BLVRA,FC=-0.69,p=0.019816145 MRPS24,FC=0.88,p=0.002437401 PGAM2,FC=0.46,p=0.102109855 AEBP1,FC=0.38,p=0.543554918 AEBP1,FC=0.38,p=0.543554918 POLD2,FC=1.13,p=0.000641315 YKT6,FC=1.02,p=0.004076187 NPC1L1,FC=0.13,p=0.828391798 OGDH,FC=0.51,p=0.182986615 PPIA,FC=0.10,p=0.776229645 PPIA,FC=1.02,p=0.003284879 PURB,FC=0.04,p=0.883088815 ADCY1,FC=-0.24,p=0.582517829 IGFBP1,FC=-1.25,p=0.093006312 IGFBP1,FC=0.29,p=0.652986205 IGFBP3,FC=2.26,p=0.000146699


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-0.30,p=1.61e-05 ELMO1,FC=-0.12,p=0.010646505 TXNDC3,FC=0.02,p=0.587852477 SFRP4,FC=0.17,p=0.332209399 STARD3NL,FC=0.18,p=0.006520232 AMPH,FC=-0.01,p=0.543427177 VPS41,FC=0.04,p=0.36583217 VPS41,FC=0.03,p=0.176111398 POU6F2,FC=0.21,p=0.047029816 C7orf36,FC=0.32,p=1.19e-05 RALA,FC=-0.17,p=0.024511921 CDC2L5,FC=-0.01,p=0.836220358 CDC2L5,FC=0.19,p=0.045327188 CDC2L5,FC=0.10,p=0.006280914 C7orf11,FC=0.18,p=0.053621075 C7orf10,FC=0.03,p=0.686405194 C7orf10,FC=-0.00,p=0.858014328 INHBA,FC=-0.27,p=0.050175044 INHBA,FC=-0.08,p=0.559332075 GLI3,FC=-0.05,p=0.55026525 CCND3,FC=-0.10,p=5.65e-05 C7orf25,FC=0.08,p=0.314005338 PSMA2,FC=0.13,p=0.158003856 MRPL32,FC=0.64,p=1.55e-16 STK17A,FC=-0.01,p=0.93961255 STK17A,FC=-0.10,p=0.028526675 BLVRA,FC=0.06,p=0.588078503 MRPS24,FC=0.22,p=0.005345707 URG4,FC=-0.11,p=0.042614367 DBNL,FC=-0.09,p=0.000214056 PGAM2,FC=-0.03,p=0.641489778 POLM,FC=0.01,p=0.741766746 AEBP1,FC=-0.33,p=2.2e-11 POLD2,FC=-0.01,p=0.755119212 POLD2,FC=0.10,p=0.018488242 MYL7,FC=0.03,p=0.135237823 GCK,FC=-0.11,p=0.085979499 YKT6,FC=0.10,p=0.016466856 CAMK2B,FC=0.16,p=0.019292019 NPC1L1,FC=0.13,p=0.070014027 DDX56,FC=-0.07,p=0.065614697 OGDH,FC=-0.05,p=0.091434758 H2AFV,FC=0.29,p=0.002165093 PURB,FC=-0.01,p=0.901007127 PURB,FC=0.03,p=0.716077251 MYO1G,FC=-0.40,p=8.28e-05 CCM2,FC=0.07,p=0.19972616 CCM2,FC=-0.10,p=0.196830423 TBRG4,FC=0.14,p=0.053759598 RAMP3,FC=-0.38,p=1e-15 ADCY1,FC=0.04,p=0.049676356 ADCY1,FC=0.01,p=0.748524653 IGFBP1,FC=0.11,p=0.043277998 IGFBP3,FC=0.33,p=0.024115108 PKD1L1,FC=0.27,p=0.001063141 HUS1,FC=0.03,p=0.024370664 SUNC1,FC=0.04,p=0.754377633 UPP1,FC=-0.08,p=0.119328983 UPP1,FC=-0.06,p=0.54074574 ABCA13,FC=-0.01,p=0.836306403 ABCA13,FC=0.02,p=0.730663673

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ELMO1,FC=-0.34,p=3.44e-05 ELMO1,FC=-0.08,p=0.060609127 TXNDC3,FC=0.04,p=0.550611909 SFRP4,FC=0.10,p=0.565203214 STARD3NL,FC=-0.01,p=0.949236309 AMPH,FC=-0.02,p=0.150681237 VPS41,FC=0.01,p=0.846670783 VPS41,FC=0.00,p=0.874066392 POU6F2,FC=0.21,p=0.016850197 C7orf36,FC=0.27,p=2.93e-05 RALA,FC=-0.23,p=0.000203005 CDC2L5,FC=-0.02,p=0.553555089 CDC2L5,FC=0.20,p=0.021711702 CDC2L5,FC=0.10,p=0.006257748 C7orf11,FC=0.32,p=9.18e-05 C7orf10,FC=0.05,p=0.42811233 C7orf10,FC=-0.01,p=0.699351354 INHBA,FC=-0.22,p=0.084224499 INHBA,FC=-0.07,p=0.630581648 GLI3,FC=0.01,p=0.878909016 CCND3,FC=-0.08,p=0.035166883 C7orf25,FC=0.12,p=0.044082196 PSMA2,FC=0.25,p=0.01384475 MRPL32,FC=0.68,p=1.24e-11 STK17A,FC=0.02,p=0.765476626 STK17A,FC=-0.14,p=0.000112236 BLVRA,FC=-0.12,p=0.116748211 MRPS24,FC=0.26,p=3.12e-06 URG4,FC=-0.15,p=0.013476096 DBNL,FC=-0.09,p=0.016507438 PGAM2,FC=-0.01,p=0.794997369 POLM,FC=0.00,p=0.828166964 AEBP1,FC=-0.34,p=9.92e-10 POLD2,FC=-0.01,p=0.716949418 POLD2,FC=0.13,p=0.004198485 MYL7,FC=0.05,p=0.055927831 GCK,FC=-0.06,p=0.35747005 YKT6,FC=0.16,p=0.007075122 CAMK2B,FC=0.14,p=0.04098842 NPC1L1,FC=0.13,p=0.065422898 DDX56,FC=-0.06,p=0.161920952 OGDH,FC=-0.03,p=0.317753098 H2AFV,FC=0.31,p=8.14e-07 PURB,FC=0.06,p=0.310846745 PURB,FC=0.11,p=0.118805236 MYO1G,FC=-0.47,p=2.49e-06 CCM2,FC=0.07,p=0.25986614 CCM2,FC=-0.11,p=0.081574985 TBRG4,FC=0.23,p=0.001267941 RAMP3,FC=-0.38,p=2.97e-17 ADCY1,FC=0.04,p=0.104600408 ADCY1,FC=-0.04,p=0.289528637 IGFBP1,FC=0.08,p=0.026454696 IGFBP3,FC=0.56,p=0.003210511 PKD1L1,FC=0.28,p=0.000780751 HUS1,FC=0.05,p=0.019000999 SUNC1,FC=-0.05,p=0.667653222 UPP1,FC=-0.08,p=0.195786059 UPP1,FC=-0.07,p=0.531944911 ABCA13,FC=0.01,p=0.588474717 ABCA13,FC=0.17,p=0.015662706


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

ELMO1,FC=-1.01,p=2.51e-25 TXNDC3,FC=-0.36,p=0.004452355 SFRP4,FC=0.92,p=7.19e-11 SFRP4,FC=0.90,p=4.22e-10 AMPH,FC=-0.67,p=8.64e-09 VPS41,FC=0.47,p=1.2e-05 VPS41,FC=0.30,p=6.7e-08 POU6F2,FC=0.40,p=0.011096532 RALA,FC=0.54,p=7.89e-08 CDC2L5,FC=0.68,p=5.72e-24 CDC2L5,FC=1.15,p=1.01e-19 CDC2L5,FC=0.22,p=0.000192442 C7orf10,FC=1.89,p=6.86e-19 INHBA,FC=-0.49,p=0.007261569 INHBA,FC=0.33,p=0.028935788 GLI3,FC=-0.13,p=0.075160621 C7orf25,FC=-0.05,p=0.594150205 C7orf25,FC=-0.20,p=0.038696776 PSMA2,FC=0.55,p=8.59e-14 PSMA2,FC=-0.39,p=2.41e-12 HECW1,FC=-0.63,p=9.68e-12 HECW1,FC=-0.53,p=1.71e-10 STK17A,FC=0.46,p=5.28e-07 STK17A,FC=-0.15,p=0.352382179 STK17A,FC=-0.27,p=2.05e-05 C7orf44,FC=0.11,p=0.054923162 BLVRA,FC=-0.06,p=0.322776738 BLVRA,FC=0.71,p=3.68e-09 BLVRA,FC=-0.13,p=0.101877481 URG4,FC=0.14,p=0.044776326 UBE2D4,FC=-0.50,p=1.28e-21 UBE2D4,FC=0.14,p=0.04651682 POLR2J4,FC=0.85,p=1.84e-21 PGAM2,FC=0.11,p=0.404153919 POLM,FC=1.07,p=4.66e-10 AEBP1,FC=0.33,p=0.017018473 POLD2,FC=0.48,p=9.37e-11 MYL7,FC=-0.05,p=0.617356627 GCK,FC=-0.85,p=4.67e-09 YKT6,FC=1.73,p=1.06e-28 YKT6,FC=1.55,p=2.48e-26 CAMK2B,FC=0.19,p=0.126522384 CAMK2B,FC=-0.20,p=0.087199363 CAMK2B,FC=-0.63,p=1.65e-21 CAMK2B,FC=0.24,p=0.097170232 NUDCD3,FC=-0.31,p=4.04e-08 NUDCD3,FC=-0.43,p=2.54e-09 NPC1L1,FC=0.06,p=0.685469979 DDX56,FC=0.41,p=2.15e-12 OGDH,FC=0.05,p=0.519161739 ZMIZ2,FC=-0.10,p=0.148723946 ZMIZ2,FC=0.85,p=4.08e-08 ZMIZ2,FC=0.32,p=0.001134992 PPIA,FC=1.43,p=1.6e-21 H2AFV,FC=-0.64,p=5.59e-11 H2AFV,FC=-0.36,p=2.44e-08 H2AFV,FC=0.83,p=1.66e-30 NACAD,FC=-0.22,p=0.129661843 TBRG4,FC=0.55,p=0.001390719 RAMP3,FC=-2.27,p=3.9e-64 ADCY1,FC=-0.31,p=0.00064265 ADCY1,FC=-0.23,p=0.113001784 IGFBP1,FC=0.33,p=0.119529473 IGFBP3,FC=1.58,p=6.63e-24 IGFBP3,FC=1.39,p=2.43e-23 TNS3,FC=-1.17,p=4.26e-44 C7orf69,FC=0.21,p=0.090392687 HUS1,FC=0.19,p=0.01512191 HUS1,FC=2.18,p=1.02e-48 HUS1,FC=0.32,p=0.002149024 UPP1,FC=0.24,p=0.032776433

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-302L6, 5/50, 0.1 RP11-302L6, 3/50, 0.06 RP11-121A8, 5/50, 0.1 RP11-121A8, 3/50, 0.06 RP11-64I2, 11/50, 0.22 RP11-64I2, 3/50, 0.06 RP5-1178G13, 4/50, 0.08 RP5-1178G13, 6/50, 0.12 RP4-612F12, 7/50, 0.14 RP4-612F12, 2/50, 0.04 RP11-100C21, 12/50, 0.24 RP11-100C21, 0/50, 0 RP5-1032B10, 13/50, 0.26 RP5-1032B10, 10/50, 0.2 RP11-36H20, 18/50, 0.36 RP11-36H20, 1/50, 0.02 RP5-1022I14, 20/50, 0.4 RP5-1022I14, 3/50, 0.06 RP11-52M17, 18/50, 0.36 RP11-52M17, 1/50, 0.02 RP4-647J21, 15/50, 0.3 RP4-647J21, 2/50, 0.04 RP11-111G20, 2/50, 0.04 RP11-111G20, 1/50, 0.02 RP11-132L11, 4/50, 0.08 RP11-132L11, 2/50, 0.04 RP11-571N3, 3/50, 0.06 RP11-571N3, 2/50, 0.04 RP11-95J15, 4/50, 0.08 RP11-95J15, 4/50, 0.08 RP11-21H20, 10/50, 0.2 RP11-21H20, 0/50, 0

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12367789 PMID=12599234

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D7S510, 5/23, 22% Our unpublished data D7S691, 9/29, 31% Our unpublished data D7S2427, 13/26, 50% D7S510, 3/19, 16% PMID=10987304 D7S519, 0/16, 0%

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