IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

EGFR, up, 69/125(55%) EGFR, up, 92/167(55%) EGFR, up, 47/60(78%) EGFR, up, 86/172(50%) EGFR, up, 73/130(56%) EGFR, up, 31/96(32%) EGFR, up, 94/169(56%) EGFR, up, 66/111(59%) EGFR, up, 101/130(78%) EGFR, up, 20/30(67%) EGFR, up, 58/82(71%) EGFR, up, 121/200(61%) EGFR, up, 48/72(67%) EGFR, 34.22%, 4845/14158

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=-0.12,p=0.607573493 EGFR,FC=0.62,p=0.028878125 GBAS,FC=0.04,p=0.771800959 PSPH,FC=0.95,p=0.011404608 PSPH,FC=0.80,p=0.005669543 CCT6A,FC=0.25,p=0.033700638 PHKG1,FC=0.30,p=0.023512933 ZNF273,FC=0.73,p=0.001920133 ZNF117,FC=0.14,p=0.241799252 ZNF92,FC=0.36,p=0.06415824 GUSB,FC=0.23,p=0.010149625 ASL,FC=0.03,p=0.906086651 TPST1,FC=-0.14,p=0.53233676 KCTD7,FC=0.08,p=0.53665671 KCTD7,FC=0.24,p=0.003534323 KCTD7,FC=0.56,p=0.000377685 AUTS2,FC=0.02,p=0.915096918 FKBP6,FC=0.21,p=0.372863753 FZD9,FC=0.42,p=0.025611695 BAZ1B,FC=-0.13,p=0.161554581 BCL7B,FC=-0.26,p=5.77e-05 TBL2,FC=0.40,p=6.74e-06 WBSCR22,FC=0.36,p=0.03749465 WBSCR22,FC=0.30,p=0.011184167 STX1A,FC=1.45,p=2.67e-17 CLDN3,FC=1.47,p=5.43e-09 CLDN4,FC=1.05,p=6.22e-09 ELN,FC=-0.08,p=0.590081199 ELN,FC=-0.64,p=0.010175866 LIMK1,FC=0.59,p=0.000189571 RFC2,FC=-0.09,p=0.602847873 CLIP2,FC=0.11,p=0.243890456 PMS2L3,FC=0.52,p=2.35e-07 PMS2L3,FC=0.74,p=0.000181537 PMS2L3,FC=0.43,p=2.66e-06 HIP1,FC=-0.57,p=0.000296899

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=0.37,p=0.147832839 EGFR,FC=1.07,p=0.004167734 GBAS,FC=-0.17,p=0.26316763 PSPH,FC=1.54,p=0.00146832 PSPH,FC=1.30,p=0.000483266 CCT6A,FC=0.43,p=0.000890324 PHKG1,FC=-0.30,p=0.122169585 ZNF273,FC=1.17,p=0.000195749 ZNF117,FC=-0.16,p=0.339284425 ZNF92,FC=0.09,p=0.753711615 GUSB,FC=-0.29,p=0.000511644 ASL,FC=-1.04,p=0.001033731 TPST1,FC=0.21,p=0.447626269 KCTD7,FC=0.12,p=0.520925688 KCTD7,FC=0.30,p=0.011398168 KCTD7,FC=0.71,p=0.00339319 AUTS2,FC=0.04,p=0.832884892 FKBP6,FC=-0.31,p=0.365082071 FZD9,FC=0.16,p=0.502475451 BAZ1B,FC=0.03,p=0.707149318 BCL7B,FC=-0.18,p=0.022928363 TBL2,FC=0.13,p=0.200590011 WBSCR22,FC=-0.01,p=0.979202351 WBSCR22,FC=0.12,p=0.45272946 STX1A,FC=1.30,p=5.81e-07 CLDN3,FC=-1.31,p=6.56e-05 CLDN4,FC=0.00,p=0.991173975 ELN,FC=-0.06,p=0.756800863 ELN,FC=-1.36,p=7.62e-05 LIMK1,FC=0.49,p=0.034139451 RFC2,FC=0.49,p=0.003926209 CLIP2,FC=0.23,p=0.053194525 PMS2L3,FC=0.99,p=1.84e-09 PMS2L3,FC=1.35,p=8.81e-07 PMS2L3,FC=0.78,p=3.46e-08 HIP1,FC=-0.84,p=6.79e-07


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=0.01,p=0.971040267 EGFR,FC=0.05,p=0.36279473 EGFR,FC=0.22,p=0.058342933 EGFR,FC=0.07,p=0.62967159 EGFR,FC=-0.29,p=7.03e-05 EGFR,FC=0.14,p=0.33479461 LANCL2,FC=0.45,p=9.01e-10 MRPS17,FC=0.76,p=2.9e-29 GBAS,FC=0.29,p=0.000975569 PSPH,FC=0.96,p=4.71e-18 PSPH,FC=0.98,p=0.000499988 CCT6A,FC=1.02,p=1.55e-42 CCT6A,FC=0.44,p=5.08e-07 PHKG1,FC=-0.45,p=3.13e-07 CHCHD2,FC=0.36,p=3.16e-10 ZNF107,FC=0.80,p=4.46e-10 ZNF273,FC=0.24,p=0.00051876 ZNF117,FC=0.52,p=0.000113056 ZNF117,FC=0.72,p=8.88e-12 GUSB,FC=0.30,p=0.000105042 ASL,FC=0.08,p=0.287739802 ASL,FC=0.64,p=1.62e-24 ASL,FC=0.04,p=0.522526714 TPST1,FC=0.31,p=6.81e-07 KCTD7,FC=-0.27,p=1.09e-05 C7orf42,FC=0.64,p=6.08e-29 TYW1,FC=0.07,p=0.094889216 STAG3L4,FC=-0.19,p=0.015182835 AUTS2,FC=-0.16,p=0.235127733 NSUN5C,FC=0.82,p=6.33e-21 NSUN5C,FC=0.58,p=9.72e-14 PMS2L2,FC=0.55,p=1.08e-17 NSUN5,FC=0.75,p=3.8e-27 NSUN5,FC=1.04,p=1.56e-43 FKBP6,FC=-0.43,p=0.000273576 FZD9,FC=-0.12,p=0.32138733 BAZ1B,FC=0.44,p=7.98e-05 BAZ1B,FC=0.03,p=0.666984267 BCL7B,FC=-0.23,p=0.000155638 TBL2,FC=0.78,p=2.08e-38 TBL2,FC=-0.01,p=0.82480923 MLXIPL,FC=-0.11,p=0.465279928 WBSCR22,FC=0.75,p=1.86e-34 STX1A,FC=0.80,p=2.27e-18 ABHD11,FC=1.00,p=7.06e-30 CLDN3,FC=1.65,p=1.81e-26 CLDN3,FC=2.64,p=2.87e-30 CLDN4,FC=1.15,p=8.18e-26 ELN,FC=0.18,p=0.065752514 ELN,FC=-1.45,p=2.35e-12 LIMK1,FC=1.31,p=7.75e-16 LIMK1,FC=0.43,p=4.38e-06 LAT2,FC=-0.58,p=1.03e-08 LAT2,FC=-0.01,p=0.878683144 RFC2,FC=0.91,p=7.85e-25 RFC2,FC=0.94,p=1.9e-26 CLIP2,FC=-0.78,p=9.85e-13 GTF2IRD1,FC=0.85,p=6.92e-43 GTF2I,FC=1.10,p=6.98e-27 WBSCR16,FC=0.40,p=4.7e-14 NSUN5B,FC=1.05,p=3.54e-29 PMS2L3,FC=0.85,p=6.01e-37 PMS2L3,FC=0.77,p=1.07e-32 PMS2L3,FC=0.98,p=4.01e-32 HIP1,FC=0.05,p=0.621005866 HIP1,FC=-0.24,p=0.003942568

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=3.51,p=1.13e-36 EGFR,FC=-1.24,p=1.07e-46 EGFR,FC=2.59,p=9.31e-112 EGFR,FC=-3.65,p=1.38e-101 EGFR,FC=7.56,p=1.8e-194 EGFR,FC=4.62,p=1.43e-110 LANCL2,FC=1.22,p=1.82e-41 MRPS17,FC=-0.73,p=1.88e-27 GBAS,FC=-0.06,p=0.488482977 PSPH,FC=2.32,p=1.98e-45 PSPH,FC=1.69,p=2.85e-07 CCT6A,FC=1.80,p=2.32e-76 CCT6A,FC=0.01,p=0.899826995 PHKG1,FC=0.88,p=1.56e-15 CHCHD2,FC=-6.99,p=3.46e-144 ZNF107,FC=2.77,p=4.31e-41 ZNF273,FC=2.12,p=1.24e-63 ZNF117,FC=-3.12,p=5.78e-51 ZNF117,FC=-1.76,p=9.35e-28 GUSB,FC=-2.11,p=1.37e-69 ASL,FC=-0.77,p=8.38e-14 ASL,FC=0.20,p=0.068047381 ASL,FC=0.83,p=5.89e-25 TPST1,FC=1.04,p=2.62e-46 KCTD7,FC=0.80,p=3.73e-29 C7orf42,FC=-4.74,p=2.42e-99 TYW1,FC=3.29,p=1.37e-123 STAG3L4,FC=1.08,p=1.35e-34 AUTS2,FC=0.75,p=6.64e-21 NSUN5C,FC=-0.04,p=0.61845335 NSUN5C,FC=-1.26,p=3.93e-39 PMS2L2,FC=-1.85,p=6.98e-47 NSUN5,FC=-2.13,p=1.23e-74 NSUN5,FC=1.26,p=4.32e-43 FKBP6,FC=-0.26,p=0.006403391 FZD9,FC=-0.07,p=0.519698409 BAZ1B,FC=4.11,p=1e-87 BAZ1B,FC=-2.02,p=3.54e-84 BCL7B,FC=-1.33,p=4.22e-57 TBL2,FC=0.16,p=0.007000846 TBL2,FC=2.56,p=6.7e-88 MLXIPL,FC=-1.20,p=3.63e-10 WBSCR22,FC=-6.52,p=1.82e-148 STX1A,FC=-0.00,p=0.997820971 ABHD11,FC=-3.01,p=2.26e-61 CLDN3,FC=2.50,p=1.17e-56 CLDN3,FC=2.93,p=1.31e-37 CLDN4,FC=3.50,p=7.71e-92 ELN,FC=0.19,p=0.083648342 ELN,FC=1.41,p=2.1e-27 LIMK1,FC=3.26,p=2.69e-66 LIMK1,FC=-1.55,p=3.76e-39 LAT2,FC=-0.49,p=5.11e-08 LAT2,FC=-3.98,p=1.52e-136 RFC2,FC=1.33,p=6.53e-26 RFC2,FC=1.89,p=3.04e-50 CLIP2,FC=-3.62,p=1.02e-65 GTF2IRD1,FC=1.27,p=2.77e-66 GTF2I,FC=-3.89,p=2.8e-94 WBSCR16,FC=-4.21,p=1.44e-126 NSUN5B,FC=0.32,p=0.000117118 PMS2L3,FC=-1.87,p=1.69e-63 PMS2L3,FC=-1.05,p=1.93e-39 PMS2L3,FC=-2.06,p=4.06e-27 HIP1,FC=-3.34,p=5.2e-20 HIP1,FC=-2.99,p=4.18e-40


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TCEA1,FC=-0.21,p=0.261490497 EGFR,FC=0.42,p=0.001682164 EGFR,FC=0.90,p=2.23e-05 EGFR,FC=0.01,p=0.958697235 EGFR,FC=-0.46,p=0.055331971 EGFR,FC=-0.36,p=0.027892368 EGFR,FC=0.46,p=0.00026381 EGFR,FC=0.29,p=0.175864536 EGFR,FC=-0.66,p=0.000325503 EGFR,FC=0.50,p=0.027854343 EGFR,FC=0.34,p=0.000120822 EGFR,FC=1.17,p=2.7e-05 LANCL2,FC=0.28,p=0.001387461 LANCL2,FC=-0.29,p=0.00010867 LANCL2,FC=-0.02,p=0.925272289 ZNF713,FC=-0.37,p=0.090980599 MRPS17,FC=0.96,p=3.85e-24 GBAS,FC=0.61,p=0.000291498 GBAS,FC=-0.03,p=0.744369434 PSPH,FC=0.93,p=0.003357336 PSPH,FC=1.10,p=5.85e-20 PSPH,FC=1.11,p=1.86e-07 CCT6A,FC=0.41,p=4.52e-08 CCT6A,FC=0.50,p=4.5e-09 SUMF2,FC=0.98,p=1.14e-19 PHKG1,FC=0.40,p=0.036820034 CHCHD2,FC=0.57,p=2.33e-18 GTPBP5,FC=-0.01,p=0.970165301 ZNF583,FC=0.21,p=0.322368348 DPY19L2,FC=-0.06,p=0.787103321 ZNF680,FC=0.38,p=0.001841857 ZNF107,FC=0.56,p=1.48e-06 ZNF107,FC=-0.40,p=0.098801127 ZNF107,FC=0.96,p=8.59e-08 ZNF138,FC=0.87,p=1.9e-22 ZNF273,FC=0.48,p=0.00776581 ZNF273,FC=0.24,p=0.006726004 ZNF117,FC=0.56,p=1.97e-05 ZNF117,FC=0.26,p=0.127064422 ZNF117,FC=1.06,p=1.8e-05 ZNF117,FC=-0.02,p=0.927902223 ZNF92,FC=0.48,p=0.035428593 ZNF92,FC=0.45,p=0.01260508 ZNF92,FC=0.49,p=4.5e-05 VKORC1L1,FC=0.50,p=0.000371583 GUSB,FC=0.15,p=0.054755518 ASL,FC=0.60,p=2.54e-14 ASL,FC=0.61,p=5.42e-09 ASL,FC=-0.07,p=0.422641163 TPST1,FC=-0.02,p=0.800843953 NCRNA00174,FC=0.57,p=1.78e-05 KCTD7,FC=-0.50,p=6.93e-11 KCTD7,FC=0.21,p=0.317331443 KCTD7,FC=0.40,p=0.037288656 C7orf42,FC=-0.46,p=7.06e-10 C7orf42,FC=0.32,p=3.11e-06 SBDS,FC=-1.17,p=2.19e-33 TYW1,FC=0.18,p=0.001052728 STAG3L4,FC=0.01,p=0.884325434 STAG3L4,FC=-0.00,p=0.964797603 AUTS2,FC=-0.74,p=1.38e-06 AUTS2,FC=-1.43,p=5.25e-12 AUTS2,FC=-1.31,p=1.44e-18 AUTS2,FC=-0.86,p=6.27e-05 AUTS2,FC=-1.36,p=3.83e-10 AUTS2,FC=-0.11,p=0.630086662 WBSCR17,FC=-1.24,p=1.24e-08 WBSCR17,FC=-0.18,p=0.344496479 CALN1,FC=0.82,p=0.000212694 CALN1,FC=0.26,p=0.134300764 CALN1,FC=-0.27,p=0.22816824 NSUN5C,FC=0.66,p=9.73e-14 NSUN5C,FC=0.76,p=3.27e-15 PMS2L2,FC=0.54,p=9.72e-14 NSUN5,FC=0.76,p=1.37e-23 NSUN5,FC=0.54,p=7.53e-15 TRIM50,FC=0.06,p=0.659217783 TRIM50,FC=0.03,p=0.868617612 FKBP6,FC=-0.03,p=0.841579579 FZD9,FC=0.48,p=0.010162719 BAZ1B,FC=0.28,p=4.12e-05 BAZ1B,FC=0.14,p=0.424569519 BAZ1B,FC=0.84,p=1.73e-06 BCL7B,FC=-0.10,p=0.135745083 TBL2,FC=0.63,p=3.46e-05 TBL2,FC=0.47,p=1.49e-11 MLXIPL,FC=-0.54,p=0.006979718 VPS37D,FC=0.21,p=0.163997384 DNAJC30,FC=0.45,p=8.95e-08 DNAJC30,FC=-0.21,p=0.218604787 DNAJC30,FC=-0.24,p=0.057474105 WBSCR22,FC=0.60,p=2.08e-16 STX1A,FC=1.57,p=7.94e-21 ABHD11,FC=0.89,p=6.23e-17 ABHD11,FC=0.68,p=6.27e-05 ABHD11,FC=1.12,p=1.86e-05 CLDN3,FC=1.70,p=4.6e-10 CLDN3,FC=1.30,p=2.2e-09 CLDN4,FC=1.24,p=2.73e-14 WBSCR27,FC=0.94,p=7e-08 WBSCR28,FC=0.36,p=0.056788031 ELN,FC=-1.23,p=3.55e-06 ELN,FC=-0.00,p=0.984376322 LIMK1,FC=0.81,p=1.03e-05 LIMK1,FC=0.44,p=0.002318885 LAT2,FC=-0.09,p=0.557158765 LAT2,FC=-0.75,p=5.32e-10 RFC2,FC=0.33,p=0.007695657 RFC2,FC=0.26,p=0.020862657 CLIP2,FC=-0.72,p=7.02e-07 GTF2IRD1,FC=0.82,p=3.87e-24 GTF2I,FC=1.06,p=7.1e-13 WBSCR16,FC=0.37,p=1.07e-07 LOC541473,FC=0.35,p=0.058686218 NSUN5B,FC=0.90,p=6.46e-19 PMS2L3,FC=0.62,p=1.91e-16 PMS2L3,FC=0.53,p=4.18e-10 PMS2L3,FC=0.79,p=1.65e-19 HIP1,FC=-0.23,p=0.252466717 HIP1,FC=-0.72,p=1.3e-05 HIP1,FC=-0.33,p=0.024583431 HIP1,FC=-0.47,p=0.00027442 CCL26,FC=0.50,p=0.015508594

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TCEA1,FC=-0.59,p=0.002706796 EGFR,FC=1.27,p=1.19e-13 EGFR,FC=1.13,p=1.19e-06 EGFR,FC=0.18,p=0.230181892 EGFR,FC=-0.56,p=0.010394364 EGFR,FC=0.28,p=0.102846725 EGFR,FC=0.86,p=2.32e-08 EGFR,FC=0.41,p=0.089047723 EGFR,FC=-0.53,p=0.015904522 EGFR,FC=0.65,p=0.012462796 EGFR,FC=0.34,p=0.001910324 EGFR,FC=1.21,p=3.45e-06 LANCL2,FC=0.57,p=2.48e-06 LANCL2,FC=-0.11,p=0.196439835 LANCL2,FC=0.14,p=0.484975722 ZNF713,FC=-1.14,p=1.42e-05 MRPS17,FC=1.18,p=3.75e-21 GBAS,FC=0.62,p=0.001168185 GBAS,FC=-0.30,p=0.005631731 PSPH,FC=1.61,p=8.38e-06 PSPH,FC=1.79,p=5.61e-20 PSPH,FC=1.28,p=7.23e-07 CCT6A,FC=0.74,p=1.77e-11 CCT6A,FC=0.71,p=9.23e-11 SUMF2,FC=0.74,p=1.88e-09 PHKG1,FC=1.26,p=3.5e-09 CHCHD2,FC=0.74,p=7.23e-21 GTPBP5,FC=0.18,p=0.305191814 ZNF583,FC=0.84,p=0.000359868 DPY19L2,FC=0.07,p=0.761489118 ZNF680,FC=0.06,p=0.689241214 ZNF107,FC=0.52,p=1.59e-05 ZNF107,FC=0.25,p=0.382525056 ZNF107,FC=1.36,p=1.66e-09 ZNF138,FC=0.92,p=4.84e-17 ZNF273,FC=0.89,p=0.000134682 ZNF273,FC=0.53,p=5.13e-06 ZNF117,FC=0.51,p=0.000133942 ZNF117,FC=-0.41,p=0.00537526 ZNF117,FC=1.18,p=1.22e-06 ZNF117,FC=-1.04,p=0.000232735 ZNF92,FC=0.18,p=0.504545385 ZNF92,FC=0.21,p=0.348777049 ZNF92,FC=0.14,p=0.299783947 VKORC1L1,FC=-0.08,p=0.60950843 GUSB,FC=-0.20,p=0.019289719 ASL,FC=0.90,p=1.98e-19 ASL,FC=0.65,p=5.27e-11 ASL,FC=-0.89,p=6.77e-14 TPST1,FC=0.30,p=0.003869289 NCRNA00174,FC=0.41,p=0.003740017 KCTD7,FC=-0.66,p=1.96e-15 KCTD7,FC=-0.09,p=0.688066065 KCTD7,FC=-0.27,p=0.136143234 C7orf42,FC=-0.55,p=2.47e-12 C7orf42,FC=0.50,p=4.7e-10 SBDS,FC=-1.33,p=3.63e-24 TYW1,FC=0.28,p=5.49e-05 STAG3L4,FC=-0.15,p=0.138302023 STAG3L4,FC=0.28,p=0.012263705 AUTS2,FC=-0.05,p=0.640623628 AUTS2,FC=-1.23,p=1.21e-07 AUTS2,FC=-1.43,p=3.94e-23 AUTS2,FC=-0.48,p=0.053928358 AUTS2,FC=-1.33,p=2.68e-07 AUTS2,FC=0.09,p=0.668422701 WBSCR17,FC=-1.56,p=2.41e-12 WBSCR17,FC=-0.57,p=0.008917455 CALN1,FC=1.43,p=1e-07 CALN1,FC=1.11,p=1.04e-09 CALN1,FC=0.26,p=0.364859066 NSUN5C,FC=0.61,p=1.24e-10 NSUN5C,FC=0.33,p=0.00339343 PMS2L2,FC=0.82,p=9.63e-20 NSUN5,FC=0.66,p=5.42e-15 NSUN5,FC=0.45,p=1.74e-08 TRIM50,FC=-0.40,p=0.000631016 TRIM50,FC=0.12,p=0.578768303 FKBP6,FC=0.50,p=0.005065462 FZD9,FC=0.69,p=0.000253808 BAZ1B,FC=0.57,p=2.11e-09 BAZ1B,FC=0.45,p=0.026114546 BAZ1B,FC=1.52,p=2.45e-12 BCL7B,FC=0.01,p=0.930140085 TBL2,FC=0.97,p=1.79e-06 TBL2,FC=0.21,p=0.013715667 MLXIPL,FC=0.28,p=0.184836609 VPS37D,FC=-0.01,p=0.976494218 DNAJC30,FC=0.71,p=4.75e-12 DNAJC30,FC=-0.67,p=0.000791347 DNAJC30,FC=-0.53,p=0.000209574 WBSCR22,FC=0.73,p=6.91e-18 STX1A,FC=1.19,p=7.96e-12 ABHD11,FC=0.60,p=1.37e-09 ABHD11,FC=0.73,p=9.91e-05 ABHD11,FC=0.34,p=0.251895256 CLDN3,FC=-1.91,p=3.7e-08 CLDN3,FC=-2.19,p=1.59e-15 CLDN4,FC=0.66,p=0.000468143 WBSCR27,FC=0.77,p=0.000212212 WBSCR28,FC=0.16,p=0.43128676 ELN,FC=-1.49,p=1.46e-06 ELN,FC=0.31,p=0.10447145 LIMK1,FC=1.24,p=6.44e-09 LIMK1,FC=-0.26,p=0.160667122 LAT2,FC=0.13,p=0.416487577 LAT2,FC=-1.74,p=4.68e-18 RFC2,FC=0.51,p=0.000357903 RFC2,FC=0.53,p=1.82e-06 CLIP2,FC=-0.21,p=0.177767239 GTF2IRD1,FC=1.21,p=1.34e-28 GTF2I,FC=1.15,p=1.9e-12 WBSCR16,FC=0.57,p=1.93e-11 LOC541473,FC=1.33,p=8.9e-11 NSUN5B,FC=0.70,p=2.27e-12 PMS2L3,FC=0.96,p=3.08e-24 PMS2L3,FC=0.94,p=1.68e-20 PMS2L3,FC=1.18,p=1.68e-31 HIP1,FC=0.01,p=0.973384627 HIP1,FC=-0.98,p=2.06e-11 HIP1,FC=-0.27,p=0.033712748 HIP1,FC=-0.47,p=1.23e-07 CCL26,FC=1.78,p=1.93e-09


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=-0.22,p=0.477131183 EGFR,FC=0.32,p=0.613736886 EGFR,FC=0.19,p=0.764737625 PSPH,FC=0.70,p=0.022572284 CCT6A,FC=1.09,p=0.000356403 CCT6A,FC=-1.31,p=1.15e-05 CCT6A,FC=1.00,p=0.005649431 ZNF273,FC=1.21,p=0.039352199 ZNF117,FC=1.03,p=0.01625243 GUSB,FC=0.09,p=0.797964891 ASL,FC=-0.19,p=0.354842819 PMS2L2,FC=0.80,p=0.003600261 FKBP6,FC=-0.48,p=0.236112115 BAZ1B,FC=0.09,p=0.701376579 BCL7B,FC=0.47,p=0.035588579 TBL2,FC=0.58,p=0.024666518 STX1A,FC=1.90,p=0.000171976 CLDN3,FC=0.82,p=0.034732527 CLDN3,FC=-0.31,p=0.531252795 CLDN4,FC=1.75,p=0.000108547 CLDN4,FC=0.90,p=0.057871048 CLDN4,FC=0.62,p=0.111887375 CLDN4,FC=1.75,p=0.000108547 ELN,FC=-0.47,p=0.210278864 LIMK1,FC=1.30,p=0.000461931 GTF2IRD1,FC=-0.08,p=0.706318627 GTF2I,FC=0.86,p=0.011125981 GTF2I,FC=0.57,p=0.043295606

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=-0.35,p=0.509777198 EGFR,FC=0.63,p=0.108025189 EGFR,FC=0.30,p=0.461800626 PSPH,FC=0.98,p=0.002832394 CCT6A,FC=0.99,p=0.008050117 CCT6A,FC=-1.08,p=8.67e-05 CCT6A,FC=0.98,p=0.004642733 ZNF273,FC=0.85,p=0.045165333 ZNF117,FC=0.91,p=0.174191327 GUSB,FC=-0.50,p=0.067959499 ASL,FC=-0.55,p=0.022342396 PMS2L2,FC=1.06,p=0.000579914 FKBP6,FC=-0.13,p=0.766245645 BAZ1B,FC=0.33,p=0.208313501 BCL7B,FC=0.23,p=0.261889029 TBL2,FC=0.20,p=0.585595391 STX1A,FC=0.98,p=0.0059567 CLDN3,FC=0.24,p=0.478907053 CLDN3,FC=-0.02,p=0.958696099 CLDN4,FC=0.38,p=0.477714059 CLDN4,FC=0.33,p=0.564467748 CLDN4,FC=-0.12,p=0.800702117 CLDN4,FC=0.38,p=0.477714059 ELN,FC=-1.19,p=0.008992921 LIMK1,FC=1.54,p=0.000128009 GTF2IRD1,FC=-0.36,p=0.224352316 GTF2I,FC=0.55,p=0.047350169 GTF2I,FC=0.09,p=0.789504528


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=0.03,p=0.46125061 LANCL2,FC=0.03,p=0.706346524 MRPS17,FC=0.34,p=0.006268589 GBAS,FC=0.22,p=0.010665865 PSPH,FC=0.33,p=0.009735997 CCT6A,FC=0.32,p=0.002911463 SUMF2,FC=-0.06,p=0.024029613 CHCHD2,FC=0.34,p=0.001881054 ZNF138,FC=0.06,p=0.065966467 ZNF138,FC=-0.31,p=0.003149143 ZNF273,FC=-0.00,p=0.973547305 ZNF117,FC=-0.05,p=0.328525785 ZNF92,FC=0.29,p=0.000649923 VKORC1L1,FC=0.03,p=0.627067703 GUSB,FC=-0.14,p=0.019207279 ASL,FC=-0.20,p=0.002188454 TPST1,FC=0.03,p=0.747396859 KCTD7,FC=0.09,p=0.031662773 RABGEF1,FC=-0.01,p=0.852157881 AUTS2,FC=0.19,p=0.010858373 AUTS2,FC=0.17,p=0.153115619 AUTS2,FC=0.19,p=0.064898361 WBSCR17,FC=-0.00,p=0.87262311 CALN1,FC=0.09,p=0.259284179 FKBP6,FC=0.05,p=0.001360565 FZD9,FC=0.07,p=0.326672352 BAZ1B,FC=0.15,p=0.01459345 BAZ1B,FC=0.03,p=0.49964984 BCL7B,FC=-0.00,p=0.997498798 TBL2,FC=-0.01,p=0.806767786 WBSCR22,FC=0.06,p=0.024667529 STX1A,FC=0.31,p=7.27e-06 CLDN3,FC=0.28,p=0.04415922 ELN,FC=-0.02,p=0.575918628 RFC2,FC=0.18,p=0.110912337 RFC2,FC=-0.07,p=0.28858017 GTF2IRD1,FC=-0.00,p=0.889562757 PMS2L3,FC=0.07,p=0.060284999 HIP1,FC=0.15,p=0.067775813 HIP1,FC=0.17,p=0.023019218 CCL26,FC=0.22,p=0.003312545

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EGFR,FC=0.03,p=0.484948803 LANCL2,FC=0.12,p=0.119881119 MRPS17,FC=0.44,p=1.46e-05 GBAS,FC=0.14,p=0.007448561 PSPH,FC=0.35,p=0.019123661 CCT6A,FC=0.44,p=3.01e-07 SUMF2,FC=-0.09,p=0.002049787 CHCHD2,FC=0.35,p=4.7e-06 ZNF138,FC=0.05,p=0.116329316 ZNF138,FC=-0.33,p=0.004674381 ZNF273,FC=0.04,p=0.307508575 ZNF117,FC=-0.13,p=0.029469251 ZNF92,FC=0.30,p=8e-05 VKORC1L1,FC=-0.04,p=0.424288933 GUSB,FC=-0.23,p=0.000156108 ASL,FC=-0.33,p=0.000841739 TPST1,FC=0.22,p=0.037593917 KCTD7,FC=0.10,p=0.012377727 RABGEF1,FC=0.06,p=0.193022889 AUTS2,FC=0.21,p=0.011025358 AUTS2,FC=0.17,p=0.039083081 AUTS2,FC=0.15,p=0.054127615 WBSCR17,FC=-0.00,p=0.969887653 CALN1,FC=0.10,p=0.147591543 FKBP6,FC=0.04,p=0.042291996 FZD9,FC=0.09,p=0.167758182 BAZ1B,FC=0.15,p=0.012759033 BAZ1B,FC=0.04,p=0.371993005 BCL7B,FC=0.00,p=0.921137754 TBL2,FC=-0.03,p=0.46012034 WBSCR22,FC=0.07,p=0.023540749 STX1A,FC=0.18,p=0.000401301 CLDN3,FC=-0.24,p=0.080267674 ELN,FC=-0.06,p=0.019393133 RFC2,FC=0.05,p=0.589008435 RFC2,FC=0.08,p=0.218407986 GTF2IRD1,FC=0.02,p=0.499144158 PMS2L3,FC=0.03,p=0.511018111 HIP1,FC=0.13,p=0.130524757 HIP1,FC=0.02,p=0.586536265 CCL26,FC=0.33,p=0.000501596


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-590,Mean=0.01

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-590,Mean=0.14

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

EGFR,FC=0.21,p=0.261609898 EGFR,FC=-0.32,p=0.000944635 EGFR,FC=0.28,p=0.02241963 EGFR,FC=0.48,p=0.001370492 EGFR,FC=-0.57,p=1.64e-10 EGFR,FC=0.49,p=0.002863402 LANCL2,FC=0.40,p=1.62e-06 MRPS17,FC=0.62,p=6.58e-19 GBAS,FC=0.51,p=1.84e-09 PSPH,FC=1.20,p=1.02e-17 PSPH,FC=1.34,p=5.08e-05 CCT6A,FC=0.93,p=6.23e-32 CCT6A,FC=0.45,p=9.35e-08 PHKG1,FC=-0.63,p=1.18e-08 CHCHD2,FC=0.26,p=7.52e-06 ZNF107,FC=0.99,p=1.99e-21 ZNF273,FC=0.38,p=1.06e-06 ZNF117,FC=0.90,p=2.52e-09 ZNF117,FC=0.98,p=3.93e-18 GUSB,FC=0.39,p=8.49e-08 ASL,FC=0.06,p=0.428685025 ASL,FC=0.85,p=2.25e-27 ASL,FC=0.11,p=0.107318077 TPST1,FC=0.26,p=4.65e-05 KCTD7,FC=-0.41,p=5.6e-12 C7orf42,FC=0.55,p=7.56e-22 TYW1,FC=-0.01,p=0.914930464 STAG3L4,FC=0.02,p=0.758994596 AUTS2,FC=0.04,p=0.780002641 NSUN5C,FC=0.60,p=1.56e-06 NSUN5C,FC=0.49,p=1.98e-06 PMS2L2,FC=0.60,p=2.62e-13 NSUN5,FC=0.62,p=1.84e-12 NSUN5,FC=0.93,p=5.76e-22 FKBP6,FC=-0.45,p=1.33e-05 FZD9,FC=-0.41,p=0.001926957 BAZ1B,FC=0.85,p=1.06e-08 BAZ1B,FC=-0.09,p=0.145561508 BCL7B,FC=-0.24,p=0.000193527 TBL2,FC=0.81,p=9.96e-34 TBL2,FC=-0.45,p=1.24e-07 MLXIPL,FC=0.28,p=0.04120984 WBSCR22,FC=0.75,p=1.69e-29 STX1A,FC=0.38,p=0.003152924 ABHD11,FC=0.86,p=8.58e-20 CLDN3,FC=1.67,p=9.88e-21 CLDN3,FC=2.78,p=1.98e-24 CLDN4,FC=1.31,p=2.01e-24 ELN,FC=0.26,p=0.016186093 ELN,FC=-1.11,p=7.72e-07 LIMK1,FC=1.05,p=1e-08 LIMK1,FC=0.35,p=0.000804981 LAT2,FC=-0.65,p=1.81e-10 LAT2,FC=-0.73,p=5.02e-07 RFC2,FC=0.73,p=1.92e-11 RFC2,FC=0.83,p=9.52e-12 CLIP2,FC=-0.94,p=7.6e-15 GTF2IRD1,FC=0.70,p=1.39e-21 GTF2I,FC=1.80,p=1.53e-46 WBSCR16,FC=0.19,p=0.000763937 NSUN5B,FC=0.87,p=7.79e-11 PMS2L3,FC=0.86,p=4.9e-22 PMS2L3,FC=0.83,p=6.46e-25 PMS2L3,FC=1.18,p=1.07e-35 HIP1,FC=0.41,p=0.000301536 HIP1,FC=-0.27,p=0.007042106

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-339F13, 11/50, 0.22 RP11-339F13, 2/50, 0.04 RP4-725G10, 7/50, 0.14 RP4-725G10, 0/50, 0 RP11-10F11, 8/50, 0.16 RP11-10F11, 4/50, 0.08 RP5-905H7, 13/50, 0.26 RP5-905H7, 3/50, 0.06 RP11-340I6, 8/50, 0.16 RP11-340I6, 0/50, 0 RP11-479O9, 13/50, 0.26 RP11-479O9, 4/50, 0.08 RP4-756H11, 11/50, 0.22 RP4-756H11, 1/50, 0.02 RP11-458F8, 20/50, 0.4 RP11-458F8, 2/50, 0.04 RP4-736H5, 8/50, 0.16 RP4-736H5, 0/50, 0 RP11-358M3, 21/50, 0.42 RP11-358M3, 0/50, 0 RP11-156A14, 7/50, 0.14 RP11-156A14, 0/50, 0 RP11-3P22, 6/50, 0.12 RP11-3P22, 0/50, 0 RP4-715F13, 9/50, 0.18 RP4-715F13, 1/50, 0.02 RP11-409J21, 4/50, 0.08 RP11-409J21, 1/50, 0.02 RP4-635O5, 11/50, 0.22 RP4-635O5, 0/50, 0 RP11-313P13, 27/50, 0.54 RP11-313P13, 4/50, 0.08 RP11-450O3, 28/50, 0.56 RP11-450O3, 2/50, 0.04 RP11-107L23, 25/50, 0.5 RP11-107L23, 1/50, 0.02

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11391799 PMID=11748636 PMID=12367789 PMID=14581340 PMID=15093586 PMID=15093586 PMID=16322280 PMID=16322280 PMID=9591638

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D7S2550, 19/35, 54% Our unpublished data D7S659, 18/45, 40% Our unpublished data D7S2429, 18/37, 49% Our unpublished data D7S3046, 9/29, 31% PMID=10987304 D7S502, 3/20, 15%

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