IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , JAK2, 2.19%, 5/228 PTPRD, 4.76%, 9/189 PINX1, 0.53%, 1/189

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      KANK1,FC=-0.56,p=1.05e-05 SMARCA2,FC=-0.88,p=1.88e-12 SMARCA2,FC=-0.79,p=1.48e-08 VLDLR,FC=-1.66,p=1.48e-08 KCNV2,FC=0.06,p=0.763477535 KIAA0020,FC=-0.16,p=0.392560137 NCLN,FC=0.34,p=0.003493691 RFX3,FC=0.65,p=4.45e-05 SLC1A1,FC=-1.85,p=3.19e-12 SLC1A1,FC=-1.72,p=2.92e-12 JAK2,FC=-0.39,p=0.0143225 INSL4,FC=0.65,p=0.009351954 RLN2,FC=0.38,p=0.17760571 RLN1,FC=0.20,p=0.343866326 MLANA,FC=0.29,p=0.210633877 MLANA,FC=0.46,p=0.000136895 MLANA,FC=0.26,p=0.219242991 RANBP6,FC=-0.07,p=0.619884182 IL33,FC=-1.61,p=9.9e-10 UHRF2,FC=0.12,p=0.517657655 GLDC,FC=0.31,p=0.106768823 PTPRD,FC=-1.25,p=1.83e-10 PTPRD,FC=-0.14,p=0.399620167 PTPRD,FC=-1.78,p=6.21e-09 TYRP1,FC=-0.54,p=0.015567628 MPDZ,FC=-0.83,p=0.001064717 NFIB,FC=-0.70,p=4.76e-08 NFIB,FC=0.30,p=0.140472868 NFIB,FC=-0.79,p=6.03e-09 NFIB,FC=0.06,p=0.600404797 NFIB,FC=-0.55,p=0.000711894 SNAPC3,FC=0.13,p=0.301939833 PSIP1,FC=-0.81,p=1.01e-10 PSIP1,FC=-0.90,p=0.00048907 SH3GL2,FC=-0.41,p=0.080163789 RRAGA,FC=-0.57,p=2.12e-10 RPS6,FC=0.10,p=0.161596013 MLLT3,FC=-0.28,p=0.253049333

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      KANK1,FC=-0.23,p=0.163939441 SMARCA2,FC=-0.48,p=0.011345692 SMARCA2,FC=-0.25,p=0.206539072 VLDLR,FC=-0.51,p=0.107280093 KCNV2,FC=0.27,p=0.325240034 KIAA0020,FC=0.34,p=0.055226486 NCLN,FC=0.54,p=0.000117887 RFX3,FC=0.83,p=0.00091762 SLC1A1,FC=-2.42,p=9.26e-13 SLC1A1,FC=-2.44,p=1.16e-13 JAK2,FC=-0.12,p=0.511001368 INSL4,FC=0.16,p=0.29287692 RLN2,FC=0.39,p=0.358908582 RLN1,FC=0.02,p=0.943551593 MLANA,FC=0.14,p=0.639338343 MLANA,FC=0.68,p=0.000839805 MLANA,FC=0.52,p=0.085906912 RANBP6,FC=-0.43,p=0.111905683 IL33,FC=-1.99,p=5.43e-09 UHRF2,FC=-0.07,p=0.808874087 GLDC,FC=0.15,p=0.489158814 PTPRD,FC=-0.88,p=0.001282086 PTPRD,FC=-0.15,p=0.608918965 PTPRD,FC=-1.04,p=0.000706596 TYRP1,FC=-0.51,p=0.107356493 MPDZ,FC=-1.04,p=0.00122274 NFIB,FC=-0.79,p=7.16e-06 NFIB,FC=0.26,p=0.252379049 NFIB,FC=-0.82,p=6.05e-06 NFIB,FC=0.04,p=0.790208504 NFIB,FC=-0.92,p=2.46e-05 SNAPC3,FC=0.30,p=0.136992338 PSIP1,FC=-0.37,p=0.044476259 PSIP1,FC=-0.08,p=0.739761433 SH3GL2,FC=-0.30,p=0.350677652 RRAGA,FC=-0.47,p=0.002265727 RPS6,FC=0.21,p=0.037625855 MLLT3,FC=-0.79,p=0.015857695


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      KANK1,FC=-0.74,p=6.88e-21 DMRT1,FC=0.26,p=0.059091372 SMARCA2,FC=-0.19,p=0.002369484 SMARCA2,FC=-0.79,p=5e-20 SMARCA2,FC=-0.52,p=1.7e-05 SMARCA2,FC=-1.04,p=4.2e-39 VLDLR,FC=-0.71,p=3.79e-17 KCNV2,FC=-0.17,p=0.257673872 KIAA0020,FC=0.27,p=9.19e-05 NCLN,FC=-0.11,p=0.184531596 RFX3,FC=-0.30,p=0.000364454 SLC1A1,FC=-2.01,p=3.04e-47 SLC1A1,FC=-0.91,p=3.88e-10 CDC37L1,FC=-0.18,p=0.009619069 RCL1,FC=-0.28,p=5.04e-08 JAK2,FC=-0.92,p=3.32e-08 JAK2,FC=-0.44,p=5.69e-07 INSL6,FC=-0.29,p=0.017316716 INSL4,FC=0.14,p=0.378167151 RLN2,FC=-0.02,p=0.783820963 RLN1,FC=0.01,p=0.903519168 C9orf46,FC=0.33,p=0.000858096 PDCD1LG2,FC=-0.07,p=0.582734684 ERMP1,FC=-0.19,p=0.024866747 MLANA,FC=0.10,p=0.278319644 MLANA,FC=-0.22,p=0.106997225 RANBP6,FC=-0.06,p=0.462018053 IL33,FC=-2.37,p=1.1e-46 GLDC,FC=0.58,p=0.000112765 KDM4C,FC=-0.37,p=0.002962706 KDM4C,FC=0.07,p=0.135018996 PTPRD,FC=-0.61,p=1.8e-08 PTPRD,FC=-1.42,p=8.36e-44 PTPRD,FC=-1.73,p=3.28e-35 PTPRD,FC=-0.30,p=0.038530728 TYRP1,FC=-1.13,p=1.32e-18 MPDZ,FC=-1.33,p=8.01e-25 MPDZ,FC=-0.90,p=5.87e-30 NFIB,FC=-0.50,p=1.8e-05 NFIB,FC=-0.57,p=2.23e-07 NFIB,FC=-1.03,p=2.02e-29 NFIB,FC=-0.87,p=4.26e-16 NFIB,FC=-0.70,p=0.000204633 NFIB,FC=-0.89,p=9.27e-28 NFIB,FC=0.29,p=0.158722401 CER1,FC=-0.22,p=0.000145378 ANKH,FC=0.11,p=0.487976722 SNAPC3,FC=0.48,p=1.88e-10 SNAPC3,FC=-0.05,p=0.349934087 PSIP1,FC=-0.68,p=3.12e-10 PSIP1,FC=0.04,p=0.690290876 PSIP1,FC=-1.17,p=2.07e-41 BNC2,FC=-0.78,p=1.06e-24 CNTLN,FC=-0.74,p=7.58e-09 SH3GL2,FC=-1.75,p=1.67e-24 RRAGA,FC=-0.43,p=1.09e-14 HAUS6,FC=0.51,p=0.001578061 PLIN2,FC=-0.66,p=1.15e-08 DENND4C,FC=-0.34,p=7.26e-05 RPS6,FC=0.02,p=0.484584368 RPS6,FC=0.22,p=1.75e-06 RPS6,FC=-0.04,p=0.272948424 SLC24A2,FC=-0.19,p=0.014688127 MLLT3,FC=-0.19,p=0.021276356 MLLT3,FC=0.00,p=0.98225876

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      KANK1,FC=-0.10,p=0.198712945 DMRT1,FC=2.85,p=1.35e-57 SMARCA2,FC=-0.42,p=4.85e-09 SMARCA2,FC=-1.90,p=6.57e-51 SMARCA2,FC=-0.90,p=1.08e-15 SMARCA2,FC=0.31,p=0.001217947 VLDLR,FC=0.44,p=2.07e-07 KCNV2,FC=4.45,p=1.23e-86 KIAA0020,FC=-0.74,p=2.11e-17 NCLN,FC=1.08,p=7.87e-24 RFX3,FC=-0.87,p=5.87e-08 SLC1A1,FC=-3.50,p=5.25e-87 SLC1A1,FC=-0.24,p=0.008177041 CDC37L1,FC=0.91,p=9.28e-40 RCL1,FC=0.59,p=1.62e-21 JAK2,FC=-1.01,p=2.63e-15 JAK2,FC=-3.26,p=4.29e-57 INSL6,FC=0.77,p=2.48e-10 INSL4,FC=-1.89,p=8.3e-18 RLN2,FC=2.01,p=9.13e-52 RLN1,FC=0.94,p=9.8e-25 C9orf46,FC=0.55,p=1.15e-07 PDCD1LG2,FC=3.61,p=6.25e-96 ERMP1,FC=2.30,p=2.44e-85 MLANA,FC=0.94,p=3.24e-20 MLANA,FC=1.15,p=1.36e-12 RANBP6,FC=-1.69,p=1.1e-67 IL33,FC=-0.07,p=0.432065796 GLDC,FC=-0.04,p=0.73960877 KDM4C,FC=4.94,p=1.13e-129 KDM4C,FC=-0.14,p=0.104886385 PTPRD,FC=1.61,p=1.92e-33 PTPRD,FC=1.49,p=6.3e-47 PTPRD,FC=-0.52,p=1.55e-10 PTPRD,FC=-1.66,p=3.5e-16 TYRP1,FC=-3.06,p=2.32e-70 MPDZ,FC=-0.80,p=4.16e-17 MPDZ,FC=-5.24,p=5.59e-93 NFIB,FC=-2.39,p=1.81e-38 NFIB,FC=-3.08,p=3.06e-71 NFIB,FC=-5.02,p=3.22e-94 NFIB,FC=0.45,p=4.65e-12 NFIB,FC=1.91,p=1.25e-32 NFIB,FC=-1.61,p=4.4e-80 NFIB,FC=-1.25,p=2.42e-06 CER1,FC=-6.77,p=2.97e-104 ANKH,FC=-0.27,p=0.133605856 SNAPC3,FC=0.66,p=2.94e-07 SNAPC3,FC=-1.10,p=1e-32 PSIP1,FC=-5.92,p=2.05e-56 PSIP1,FC=0.80,p=1.22e-18 PSIP1,FC=-0.45,p=3.72e-07 BNC2,FC=-1.09,p=2e-20 CNTLN,FC=0.65,p=0.001644033 SH3GL2,FC=1.34,p=1.13e-38 RRAGA,FC=-1.36,p=9.57e-60 HAUS6,FC=5.35,p=1.37e-95 PLIN2,FC=-2.91,p=2.14e-99 DENND4C,FC=-0.76,p=1.43e-27 RPS6,FC=-11.26,p=2.45e-239 RPS6,FC=-0.86,p=4.16e-60 RPS6,FC=-2.54,p=8.65e-130 SLC24A2,FC=-0.91,p=1.42e-14 MLLT3,FC=-1.25,p=1.68e-23 MLLT3,FC=-2.33,p=2.22e-53


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      KANK1,FC=0.61,p=1.82e-09 KANK1,FC=-0.69,p=1.06e-12 DMRT1,FC=0.21,p=0.291130238 DMRT3,FC=0.16,p=0.528064814 DMRT2,FC=-0.49,p=0.018821598 DMRT2,FC=-1.15,p=4.03e-08 SMARCA2,FC=-0.85,p=3.83e-19 SMARCA2,FC=-0.81,p=7.56e-07 SMARCA2,FC=-0.52,p=3.18e-06 SMARCA2,FC=-0.33,p=0.015129266 FLJ35024,FC=0.14,p=0.410414062 VLDLR,FC=-0.79,p=1.08e-10 KCNV2,FC=0.02,p=0.917321681 KIAA0020,FC=0.08,p=0.283227045 KIAA0020,FC=0.10,p=0.512820603 NCLN,FC=-0.01,p=0.968829613 RFX3,FC=-0.21,p=0.325093582 RFX3,FC=-0.22,p=0.081934992 GLIS3,FC=-0.32,p=0.07709118 GLIS3,FC=-0.13,p=0.386013954 GLIS3,FC=-0.03,p=0.814390084 C9orf70,FC=0.41,p=0.032632116 SLC1A1,FC=1.30,p=4.5e-11 SLC1A1,FC=-1.51,p=6.48e-12 SLC1A1,FC=-2.14,p=5.58e-29 C9orf68,FC=-0.98,p=6.27e-06 C9orf68,FC=0.29,p=0.143779804 C9orf68,FC=-0.13,p=0.501432868 PPAPDC2,FC=0.09,p=0.23759052 CDC37L1,FC=-0.29,p=0.007749629 CDC37L1,FC=-0.24,p=0.004370332 AK3,FC=-0.44,p=7.02e-08 AK3,FC=0.49,p=4.27e-06 RCL1,FC=-0.25,p=0.012887402 RCL1,FC=-0.21,p=0.002251733 RCL1,FC=-0.47,p=0.00376881 JAK2,FC=-1.33,p=1.01e-10 JAK2,FC=-1.14,p=4.61e-09 JAK2,FC=-0.89,p=2.68e-11 INSL6,FC=0.45,p=0.038839096 INSL4,FC=1.11,p=2.39e-05 RLN2,FC=0.29,p=0.019114295 RLN1,FC=0.02,p=0.903187818 C9orf46,FC=0.31,p=0.00979083 CD274,FC=-0.17,p=0.140317814 PDCD1LG2,FC=-0.42,p=0.077079706 PDCD1LG2,FC=-0.30,p=0.218108525 KIAA1432,FC=0.44,p=0.037147133 KIAA1432,FC=0.66,p=1.09e-05 ERMP1,FC=-0.11,p=0.338584301 ERMP1,FC=0.37,p=0.000313142 MLANA,FC=0.21,p=0.287493065 MLANA,FC=0.39,p=0.063889107 KIAA2026,FC=0.00,p=0.974517472 KIAA2026,FC=-0.31,p=0.097168124 KIAA2026,FC=-0.09,p=0.504272832 KIAA2026,FC=-0.32,p=2.58e-06 RANBP6,FC=-0.21,p=0.007970298 IL33,FC=-2.05,p=2.34e-21 TPD52L3,FC=-0.05,p=0.777292396 TPD52L3,FC=0.12,p=0.470566798 UHRF2,FC=0.23,p=0.002634483 GLDC,FC=0.94,p=7.03e-06 KDM4C,FC=-1.04,p=1.2e-07 KDM4C,FC=0.08,p=0.272389731 KDM4C,FC=-0.20,p=0.146603772 KDM4C,FC=0.22,p=0.2505079 KDM4C,FC=-1.09,p=7.72e-10 C9orf123,FC=-0.52,p=1.03e-06 C9orf123,FC=0.14,p=0.09101564 PTPRD,FC=0.78,p=0.000571608 PTPRD,FC=-0.37,p=0.117275569 PTPRD,FC=0.51,p=0.036267391 PTPRD,FC=0.09,p=0.617390899 PTPRD,FC=-1.82,p=2.3e-20 PTPRD,FC=-0.39,p=0.03193213 PTPRD,FC=-1.86,p=5.18e-23 TYRP1,FC=-1.82,p=4.05e-20 C9orf150,FC=-0.18,p=0.068220618 C9orf150,FC=-1.10,p=7.08e-14 MPDZ,FC=-1.15,p=2.81e-13 MPDZ,FC=-0.70,p=2.32e-10 NFIB,FC=-0.09,p=0.703139327 NFIB,FC=-0.93,p=2.27e-17 NFIB,FC=-1.13,p=9.57e-06 NFIB,FC=-0.69,p=0.002390386 NFIB,FC=-0.56,p=0.000570879 NFIB,FC=-0.37,p=0.003026857 NFIB,FC=-0.68,p=7.34e-10 NFIB,FC=-0.81,p=2.83e-05 NFIB,FC=-0.48,p=1.28e-05 ZDHHC21,FC=0.35,p=0.114269238 ZDHHC21,FC=0.46,p=0.004356994 ZDHHC21,FC=0.50,p=0.037077334 CER1,FC=0.30,p=0.094151102 FREM1,FC=-1.52,p=2.32e-15 ANKH,FC=-0.46,p=0.003498972 TTC39B,FC=0.11,p=0.531945474 TTC39B,FC=-0.22,p=0.090024889 SNAPC3,FC=0.26,p=0.037132635 SNAPC3,FC=0.03,p=0.753966489 METTL6,FC=0.09,p=0.56911496 PSIP1,FC=-1.00,p=2.35e-21 PSIP1,FC=0.01,p=0.937660035 PSIP1,FC=0.17,p=0.128863883 PSIP1,FC=-0.70,p=2.75e-10 C9orf93,FC=-0.27,p=0.236807897 C9orf93,FC=-0.14,p=0.303209298 C9orf93,FC=0.18,p=0.260287824 C9orf93,FC=0.12,p=0.55680383 C9orf93,FC=-0.20,p=0.176098885 C9orf93,FC=-0.51,p=0.009702982 BNC2,FC=0.12,p=0.539708055 BNC2,FC=-0.57,p=2.13e-08 BNC2,FC=-0.82,p=1.12e-06 BNC2,FC=-0.51,p=3.91e-06 BNC2,FC=-0.12,p=0.280237467 BNC2,FC=-0.25,p=0.080863074 QDPR,FC=-0.85,p=4.06e-11 CNTLN,FC=-0.65,p=0.000610058 CNTLN,FC=-0.76,p=0.000108542 CNTLN,FC=-1.27,p=1.7e-13 SH3GL2,FC=-2.10,p=7.9e-18 SH3GL2,FC=-0.43,p=0.025608855 ADAMTSL1,FC=0.57,p=0.002033339 ADAMTSL1,FC=-0.52,p=0.008106825 ADAMTSL1,FC=-0.55,p=0.001185413 ADAMTSL1,FC=0.36,p=0.123690097 ADAMTSL1,FC=-0.06,p=0.696392787 ADAMTSL1,FC=-0.78,p=8.86e-06 FAM154A,FC=0.46,p=0.005174971 RRAGA,FC=-0.33,p=3.31e-08 HAUS6,FC=-0.17,p=0.19657966 HAUS6,FC=0.25,p=0.060440673 HAUS6,FC=0.40,p=0.003404339 PLIN2,FC=-0.61,p=1.78e-05 DENND4C,FC=-0.71,p=2.44e-14 DENND4C,FC=-0.65,p=9.85e-08 DENND4C,FC=-0.44,p=4.7e-09 RPS6,FC=-0.64,p=1.71e-07 RPS6,FC=0.03,p=0.469752892 RPS6,FC=-0.04,p=0.455560399 RPS6,FC=-0.05,p=0.111267543 ZMYM2,FC=-0.06,p=0.513408539 SLC24A2,FC=0.64,p=0.000956471 PACRGL,FC=-0.34,p=0.005117053 MLLT3,FC=0.05,p=0.641443981 MLLT3,FC=0.18,p=0.098028799 MLLT3,FC=-0.10,p=0.527368681

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      KANK1,FC=0.99,p=1.49e-14 KANK1,FC=-0.57,p=3.46e-08 DMRT1,FC=1.62,p=5.93e-11 DMRT3,FC=2.31,p=7.33e-12 DMRT2,FC=2.42,p=2.01e-16 DMRT2,FC=1.87,p=2.78e-13 SMARCA2,FC=-0.40,p=0.000140244 SMARCA2,FC=-0.10,p=0.48899057 SMARCA2,FC=0.13,p=0.26972029 SMARCA2,FC=0.18,p=0.148433762 FLJ35024,FC=0.85,p=1.92e-06 VLDLR,FC=-0.26,p=0.055986445 KCNV2,FC=0.42,p=0.072482072 KIAA0020,FC=0.24,p=0.008135015 KIAA0020,FC=-0.05,p=0.794626483 NCLN,FC=-0.14,p=0.440586947 RFX3,FC=-0.15,p=0.506181063 RFX3,FC=0.43,p=0.000996705 GLIS3,FC=-1.88,p=1.89e-11 GLIS3,FC=-0.67,p=0.000127437 GLIS3,FC=-0.80,p=3.76e-07 C9orf70,FC=0.79,p=0.000712 SLC1A1,FC=0.82,p=0.001022779 SLC1A1,FC=-2.40,p=7.98e-23 SLC1A1,FC=-3.07,p=8.86e-46 C9orf68,FC=-1.69,p=1.89e-12 C9orf68,FC=-0.10,p=0.665552445 C9orf68,FC=0.28,p=0.10856044 PPAPDC2,FC=0.13,p=0.113616103 CDC37L1,FC=-0.52,p=6.72e-06 CDC37L1,FC=-0.49,p=1.81e-06 AK3,FC=-0.78,p=2.01e-17 AK3,FC=0.69,p=2.7e-07 RCL1,FC=-0.03,p=0.790289804 RCL1,FC=0.25,p=0.000779248 RCL1,FC=-0.45,p=0.010479364 JAK2,FC=-2.04,p=6.87e-16 JAK2,FC=-1.88,p=2.04e-11 JAK2,FC=-1.53,p=3.13e-15 INSL6,FC=0.17,p=0.41577748 INSL4,FC=0.44,p=0.018574384 RLN2,FC=0.05,p=0.732058761 RLN1,FC=0.16,p=0.311834516 C9orf46,FC=0.14,p=0.238757929 CD274,FC=0.03,p=0.823173968 PDCD1LG2,FC=-0.78,p=0.004975975 PDCD1LG2,FC=-0.65,p=0.01945849 KIAA1432,FC=0.40,p=0.124759234 KIAA1432,FC=0.94,p=1.62e-07 ERMP1,FC=0.47,p=0.000854003 ERMP1,FC=1.09,p=1.73e-17 MLANA,FC=-0.15,p=0.538851724 MLANA,FC=0.84,p=0.000243208 KIAA2026,FC=0.01,p=0.908230398 KIAA2026,FC=-0.74,p=0.00037534 KIAA2026,FC=0.21,p=0.113794963 KIAA2026,FC=-0.16,p=0.039118924 RANBP6,FC=-0.60,p=9.23e-10 IL33,FC=-2.62,p=3.19e-19 TPD52L3,FC=-0.17,p=0.383708402 TPD52L3,FC=0.08,p=0.667516009 UHRF2,FC=0.29,p=0.000759797 GLDC,FC=1.15,p=1.42e-06 KDM4C,FC=-1.28,p=3.35e-10 KDM4C,FC=0.09,p=0.234740688 KDM4C,FC=-0.76,p=7.35e-06 KDM4C,FC=0.27,p=0.217190763 KDM4C,FC=-1.71,p=3.77e-16 C9orf123,FC=-0.70,p=8.88e-10 C9orf123,FC=0.24,p=0.011528993 PTPRD,FC=0.55,p=0.026463767 PTPRD,FC=-0.02,p=0.924430488 PTPRD,FC=0.36,p=0.201085823 PTPRD,FC=0.81,p=0.000182925 PTPRD,FC=-1.38,p=5.62e-09 PTPRD,FC=-0.44,p=0.023955157 PTPRD,FC=-1.35,p=2.75e-08 TYRP1,FC=-1.90,p=1.37e-21 C9orf150,FC=-0.61,p=7.97e-07 C9orf150,FC=-1.79,p=3.84e-21 MPDZ,FC=-1.52,p=2.28e-13 MPDZ,FC=-0.68,p=4.19e-12 NFIB,FC=-1.52,p=3.33e-10 NFIB,FC=-1.23,p=2.87e-21 NFIB,FC=-2.00,p=1.75e-12 NFIB,FC=-1.35,p=5.19e-07 NFIB,FC=-1.41,p=2.68e-15 NFIB,FC=-0.81,p=9.68e-09 NFIB,FC=-0.97,p=7.6e-16 NFIB,FC=-0.85,p=2.04e-06 NFIB,FC=-0.67,p=1.03e-08 ZDHHC21,FC=-0.17,p=0.530051626 ZDHHC21,FC=-0.46,p=0.006442004 ZDHHC21,FC=0.47,p=0.050923054 CER1,FC=1.13,p=5.54e-10 FREM1,FC=-1.79,p=1.96e-18 ANKH,FC=-0.51,p=0.002120269 TTC39B,FC=-0.41,p=0.035659829 TTC39B,FC=-0.00,p=0.989733303 SNAPC3,FC=0.04,p=0.765849903 SNAPC3,FC=0.16,p=0.166400981 METTL6,FC=0.34,p=0.052279079 PSIP1,FC=-1.21,p=7.73e-15 PSIP1,FC=-0.27,p=0.143646885 PSIP1,FC=0.08,p=0.559123607 PSIP1,FC=-0.82,p=3.81e-07 C9orf93,FC=-0.34,p=0.18282545 C9orf93,FC=0.04,p=0.816098791 C9orf93,FC=0.24,p=0.225006251 C9orf93,FC=0.19,p=0.422494113 C9orf93,FC=-0.44,p=0.011312055 C9orf93,FC=-0.35,p=0.099217827 BNC2,FC=0.94,p=5.35e-07 BNC2,FC=-0.66,p=6.2e-08 BNC2,FC=-0.75,p=7.8e-05 BNC2,FC=-0.46,p=8.93e-06 BNC2,FC=0.18,p=0.075156844 BNC2,FC=-0.19,p=0.24088346 QDPR,FC=-0.83,p=2.1e-12 CNTLN,FC=-0.07,p=0.720080594 CNTLN,FC=-0.44,p=0.022139388 CNTLN,FC=-1.10,p=6.51e-12 SH3GL2,FC=-2.32,p=6.54e-17 SH3GL2,FC=-0.11,p=0.559476562 ADAMTSL1,FC=0.71,p=0.000735659 ADAMTSL1,FC=-0.70,p=0.003191926 ADAMTSL1,FC=-0.05,p=0.777516468 ADAMTSL1,FC=0.85,p=0.001782105 ADAMTSL1,FC=0.23,p=0.181447464 ADAMTSL1,FC=-0.73,p=0.000321813 FAM154A,FC=0.36,p=0.041207507 RRAGA,FC=-0.36,p=9.63e-08 HAUS6,FC=0.06,p=0.699811783 HAUS6,FC=0.69,p=2.25e-08 HAUS6,FC=0.58,p=0.00064962 PLIN2,FC=-1.38,p=8.17e-13 DENND4C,FC=-0.97,p=5.41e-19 DENND4C,FC=-0.57,p=3.64e-05 DENND4C,FC=-0.93,p=1.1e-21 RPS6,FC=-0.89,p=8.11e-10 RPS6,FC=0.09,p=0.040139465 RPS6,FC=-0.19,p=0.001846206 RPS6,FC=-0.07,p=0.083160983 ZMYM2,FC=-0.18,p=0.034912568 SLC24A2,FC=1.38,p=3.58e-09 PACRGL,FC=-0.86,p=3.17e-08 MLLT3,FC=-0.07,p=0.493532097 MLLT3,FC=-0.31,p=0.004840638 MLLT3,FC=-0.82,p=1.41e-08


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DMRT3,FC=0.42,p=0.235981152 DMRT3,FC=-0.39,p=0.338236895 DMRT2,FC=0.46,p=0.356590563 SMARCA2,FC=-0.80,p=0.004140727 VLDLR,FC=0.11,p=0.741517236 VLDLR,FC=-0.46,p=0.337775781 VLDLR,FC=-0.23,p=0.585712176 KIAA0020,FC=-0.24,p=0.437052119 KIAA0020,FC=0.40,p=0.236635437 INSL4,FC=-0.03,p=0.972386509 RLN1,FC=-0.42,p=0.372736758 RLN1,FC=-0.48,p=0.45613084 MLANA,FC=0.07,p=0.840770759 MLANA,FC=-1.35,p=0.023357782 RANBP6,FC=0.19,p=0.392693457 GLDC,FC=1.26,p=0.000592569 PTPRD,FC=-0.54,p=0.101122569 TYRP1,FC=-2.27,p=2.88e-05 MPDZ,FC=-0.28,p=0.521087443 NFIB,FC=-0.36,p=0.471654462 ANKH,FC=0.19,p=0.462851651 ANKH,FC=-0.17,p=0.718586977 ANKH,FC=0.06,p=0.848119638 ANKH,FC=0.11,p=0.741146483 ANKH,FC=0.33,p=0.272351859 ANKH,FC=-0.08,p=0.833757351 ANKH,FC=-0.03,p=0.944753145 SNAPC3,FC=0.86,p=0.009130863 PSIP1,FC=-0.15,p=0.541711478 SH3GL2,FC=-1.07,p=0.00811522 RPS6,FC=-0.39,p=0.396946173 RPS6,FC=0.27,p=0.396860946 RPS6,FC=0.52,p=0.299918863 RPS6,FC=0.76,p=0.048443845 MLLT3,FC=-0.63,p=0.17103415

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DMRT3,FC=1.44,p=0.004213435 DMRT3,FC=0.72,p=0.208009697 DMRT2,FC=2.71,p=0.000843811 SMARCA2,FC=-0.55,p=0.137628619 VLDLR,FC=0.41,p=0.32600419 VLDLR,FC=-0.05,p=0.914782665 VLDLR,FC=0.50,p=0.307740567 KIAA0020,FC=0.15,p=0.679601038 KIAA0020,FC=0.59,p=0.045759233 INSL4,FC=-0.87,p=0.03880203 RLN1,FC=0.48,p=0.27692424 RLN1,FC=0.37,p=0.551208574 MLANA,FC=0.28,p=0.502032734 MLANA,FC=-0.92,p=0.211031452 RANBP6,FC=0.15,p=0.622175844 GLDC,FC=1.17,p=0.005702499 PTPRD,FC=0.02,p=0.94340179 TYRP1,FC=-1.96,p=0.008087804 MPDZ,FC=-0.19,p=0.613966473 NFIB,FC=-0.66,p=0.072629984 ANKH,FC=0.25,p=0.447703084 ANKH,FC=0.53,p=0.367600454 ANKH,FC=0.38,p=0.241338839 ANKH,FC=0.21,p=0.564539606 ANKH,FC=0.75,p=0.040461623 ANKH,FC=0.27,p=0.590929458 ANKH,FC=1.02,p=0.036833406 SNAPC3,FC=0.55,p=0.037552968 PSIP1,FC=0.08,p=0.773304164 SH3GL2,FC=-1.11,p=0.069836553 RPS6,FC=-0.95,p=0.046404196 RPS6,FC=-0.01,p=0.962589775 RPS6,FC=0.44,p=0.379624562 RPS6,FC=0.02,p=0.957598406 MLLT3,FC=-1.17,p=0.011571601


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DMRT1,FC=0.04,p=0.517793105 DMRT3,FC=0.01,p=0.713941842 DMRT2,FC=0.12,p=0.05974438 SMARCA2,FC=-0.20,p=0.023406691 VLDLR,FC=0.13,p=0.162723547 KCNV2,FC=0.06,p=0.071081234 KIAA0020,FC=0.12,p=0.064732013 RFX3,FC=-0.04,p=0.455376728 RFX3,FC=-0.05,p=0.438448399 GLIS3,FC=0.03,p=0.471751725 GLIS3,FC=0.11,p=0.084893787 GLIS3,FC=0.01,p=0.706976622 SLC1A1,FC=-0.43,p=2.17e-05 CDC37L1,FC=-0.05,p=0.538211288 CDC37L1,FC=-0.05,p=0.200300256 AK3,FC=0.05,p=0.144275996 RCL1,FC=-0.08,p=0.015434192 JAK2,FC=0.21,p=0.038168024 INSL6,FC=0.02,p=0.717452581 INSL4,FC=0.16,p=0.192761129 RLN2,FC=0.19,p=0.000102754 RLN1,FC=0.04,p=0.303760096 C9orf46,FC=0.07,p=0.024740307 PDCD1LG2,FC=0.01,p=0.692393507 KIAA1432,FC=-0.01,p=0.643777747 MLANA,FC=0.05,p=0.081591749 KIAA2026,FC=0.04,p=0.076823545 KIAA2026,FC=-0.06,p=0.463147178 RANBP6,FC=0.00,p=0.937723142 UHRF2,FC=-0.02,p=0.754901918 UHRF2,FC=-0.04,p=0.144375673 GLDC,FC=0.02,p=0.387611006 C9orf123,FC=-0.21,p=7e-05 PTPRD,FC=-0.05,p=0.123954321 TYRP1,FC=-0.02,p=0.216991645 TYRP1,FC=-0.31,p=7.43e-05 C9orf150,FC=-0.05,p=0.488901004 MPDZ,FC=-0.05,p=0.424783195 NFIB,FC=-0.09,p=0.327704354 CER1,FC=0.04,p=0.462957191 SNAPC3,FC=-0.07,p=0.089637841 PSIP1,FC=-0.03,p=0.772109488 PSIP1,FC=0.01,p=0.70863206 BNC2,FC=0.02,p=0.587862226 SH3GL2,FC=-0.00,p=0.915429454 ADAMTSL1,FC=0.05,p=0.106538891 RRAGA,FC=-0.23,p=0.000111296 RPS6,FC=0.32,p=0.000130242 SLC24A2,FC=0.04,p=0.013416684 MLLT3,FC=0.08,p=0.132782591

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DMRT1,FC=0.03,p=0.549734418 DMRT3,FC=0.04,p=0.305782533 DMRT2,FC=0.25,p=0.003568383 SMARCA2,FC=-0.21,p=0.086101139 VLDLR,FC=0.19,p=0.028933701 KCNV2,FC=0.07,p=0.125585083 KIAA0020,FC=0.21,p=0.007088476 RFX3,FC=-0.04,p=0.533576469 RFX3,FC=-0.03,p=0.592178468 GLIS3,FC=0.03,p=0.523056412 GLIS3,FC=0.01,p=0.854840659 GLIS3,FC=-0.02,p=0.35738262 SLC1A1,FC=-0.54,p=8.25e-10 CDC37L1,FC=-0.07,p=0.409729328 CDC37L1,FC=-0.09,p=0.09120727 AK3,FC=0.12,p=0.00309449 RCL1,FC=-0.01,p=0.784063282 JAK2,FC=0.22,p=0.022136263 INSL6,FC=0.02,p=0.839699032 INSL4,FC=0.10,p=0.088507901 RLN2,FC=0.19,p=0.000474158 RLN1,FC=0.01,p=0.739025415 C9orf46,FC=0.08,p=0.014185697 PDCD1LG2,FC=-0.00,p=0.969754428 KIAA1432,FC=-0.01,p=0.834842619 MLANA,FC=0.06,p=0.147897888 KIAA2026,FC=0.06,p=0.00926854 KIAA2026,FC=-0.01,p=0.88250722 RANBP6,FC=0.01,p=0.618429447 UHRF2,FC=-0.02,p=0.690565336 UHRF2,FC=-0.06,p=0.010776712 GLDC,FC=0.02,p=0.416034798 C9orf123,FC=-0.23,p=0.000349528 PTPRD,FC=-0.01,p=0.863603151 TYRP1,FC=-0.03,p=0.15219289 TYRP1,FC=-0.40,p=1.83e-09 C9orf150,FC=-0.15,p=0.036290743 MPDZ,FC=-0.12,p=0.010444741 NFIB,FC=-0.29,p=0.000186133 CER1,FC=0.03,p=0.477375356 SNAPC3,FC=-0.04,p=0.264360928 PSIP1,FC=0.01,p=0.901431497 PSIP1,FC=-0.00,p=0.996630467 BNC2,FC=0.02,p=0.505952519 SH3GL2,FC=-0.03,p=0.138699129 ADAMTSL1,FC=0.04,p=0.13785768 RRAGA,FC=-0.25,p=0.000155296 RPS6,FC=0.29,p=7.73e-05 SLC24A2,FC=0.04,p=0.216961529 MLLT3,FC=0.02,p=0.688547882


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-101-2,Mean=-0.33

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-101-2,Mean=-0.38

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

KANK1,FC=-0.68,p=7.71e-19 DMRT1,FC=-0.22,p=0.19508782 SMARCA2,FC=0.34,p=2.24e-06 SMARCA2,FC=-0.73,p=1.06e-14 SMARCA2,FC=-0.46,p=0.000259283 SMARCA2,FC=-0.78,p=1.46e-23 VLDLR,FC=-0.68,p=2.52e-15 KCNV2,FC=-0.16,p=0.370865542 KIAA0020,FC=0.19,p=0.004052687 NCLN,FC=-0.13,p=0.104050984 RFX3,FC=-0.44,p=1.35e-06 SLC1A1,FC=-1.86,p=1.15e-32 SLC1A1,FC=-0.72,p=4.97e-06 CDC37L1,FC=-0.19,p=0.00061482 RCL1,FC=-0.33,p=2.72e-11 JAK2,FC=-0.56,p=0.000241719 JAK2,FC=-0.36,p=3.57e-06 INSL6,FC=-0.54,p=5.03e-05 INSL4,FC=-0.21,p=0.314430116 RLN2,FC=-0.27,p=0.00089611 RLN1,FC=-0.21,p=0.015001197 C9orf46,FC=0.17,p=0.115029874 PDCD1LG2,FC=-0.08,p=0.572793537 ERMP1,FC=-0.44,p=1.18e-08 MLANA,FC=-0.53,p=0.000243368 MLANA,FC=-0.34,p=0.028674628 RANBP6,FC=-0.04,p=0.597778712 IL33,FC=-1.81,p=2.57e-21 GLDC,FC=0.44,p=0.006050124 KDM4C,FC=-0.54,p=3.04e-05 KDM4C,FC=-0.13,p=0.015581658 PTPRD,FC=-0.86,p=3.88e-11 PTPRD,FC=-1.45,p=3.69e-32 PTPRD,FC=-1.61,p=7.86e-33 PTPRD,FC=-0.29,p=0.082850093 TYRP1,FC=-0.81,p=5.33e-08 MPDZ,FC=-1.19,p=5.51e-20 MPDZ,FC=-0.79,p=3.61e-19 NFIB,FC=-0.54,p=2.63e-06 NFIB,FC=-0.15,p=0.060620849 NFIB,FC=-0.99,p=5.03e-30 NFIB,FC=-0.58,p=2.59e-11 NFIB,FC=0.07,p=0.74300681 NFIB,FC=-0.89,p=1.71e-28 NFIB,FC=1.08,p=2.17e-08 CER1,FC=-0.43,p=1.4e-10 ANKH,FC=0.29,p=0.114824286 SNAPC3,FC=0.68,p=1.27e-16 SNAPC3,FC=0.07,p=0.24772476 PSIP1,FC=-0.60,p=4.01e-13 PSIP1,FC=0.09,p=0.319517927 PSIP1,FC=-1.11,p=3.46e-45 BNC2,FC=-0.85,p=8.9e-28 CNTLN,FC=-1.00,p=2.57e-12 SH3GL2,FC=-1.83,p=1.46e-24 RRAGA,FC=-0.46,p=6.66e-16 HAUS6,FC=1.23,p=3.35e-11 PLIN2,FC=-1.14,p=1.25e-22 DENND4C,FC=-0.27,p=0.000299128 RPS6,FC=0.14,p=1.44e-08 RPS6,FC=0.30,p=1.23e-13 RPS6,FC=0.10,p=0.001073918 SLC24A2,FC=-0.56,p=4.27e-07 MLLT3,FC=0.13,p=0.10225032 MLLT3,FC=0.03,p=0.710745248

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-48M17, 0/50, 0 RP11-48M17, 14/50, 0.28 RP11-320E16, 1/50, 0.02 RP11-320E16, 26/50, 0.52 RP11-509J21, 0/50, 0 RP11-509J21, 12/50, 0.24 RP11-125K10, 0/50, 0 RP11-125K10, 5/50, 0.1 RP11-509D8, 0/50, 0 RP11-509D8, 12/50, 0.24 RP11-218I7, 1/50, 0.02 RP11-218I7, 10/50, 0.2 RP11-106A1, 7/50, 0.14 RP11-106A1, 6/50, 0.12 RP11-29B9, 2/50, 0.04 RP11-29B9, 0/50, 0 RP11-175E13, 1/50, 0.02 RP11-175E13, 17/50, 0.34 RP11-527D15, 1/50, 0.02 RP11-527D15, 15/50, 0.3 RP11-19G1, 0/50, 0 RP11-19G1, 11/50, 0.22 RP11-23D5, 0/50, 0 RP11-23D5, 13/50, 0.26 RP11-352F21, 0/50, 0 RP11-352F21, 13/50, 0.26 RP11-446F13, 0/50, 0 RP11-446F13, 19/50, 0.38 RP11-187K14, 2/50, 0.04 RP11-187K14, 9/50, 0.18 RP11-413D24, 2/50, 0.04 RP11-413D24, 24/50, 0.48 RP11-408A13, 1/50, 0.02 RP11-408A13, 17/50, 0.34 RP11-490C5, 1/50, 0.02 RP11-490C5, 7/50, 0.14 RP11-109M15, 2/50, 0.04 RP11-109M15, 21/50, 0.42 RP11-132E11, 1/50, 0.02 RP11-132E11, 3/50, 0.06 RP11-123J20, 1/50, 0.02 RP11-123J20, 18/50, 0.36 RP11-503K16, 2/50, 0.04 RP11-503K16, 13/50, 0.26 RP11-513M16, 1/50, 0.02 RP11-513M16, 6/50, 0.12 RP11-15P13, 1/50, 0.02 RP11-15P13, 6/50, 0.12

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12599234 PMID=14581340 PMID=14970871 PMID=15093586 PMID=15548372 PMID=15983384

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S288, 8/26, 31% Our unpublished data D9S1810, 16/35, 46% Our unpublished data D9S2169, 13/35, 37% Our unpublished data D9S2156, 10/32, 31% Our unpublished data D9S286, 4/7, 57% Our unpublished data D9S921, 12/22, 55% Our unpublished data D9S269, 14/31, 45% D9S288, 16/21, 76% D9S286, 14/19, 74% D9S285, 13/17, 76% PMID=10987304 D9S157, 13/17, 76% PMID=11980668 D9S254, 22/31, 71% D9S286, 7/20, 35% D9S286, 12/23, 52% D9S925, 5/24, 21% PMID=15900585 D9S925, 13/27, 48%

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