IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CYLC2,FC=-0.18,p=0.458041501 SMC2,FC=0.01,p=0.969064742 ABCA1,FC=-0.00,p=0.992136787 ABCA1,FC=0.30,p=0.049888691 ABCA1,FC=0.46,p=2.32e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CYLC2,FC=-0.13,p=0.718541303 SMC2,FC=0.55,p=0.127119188 ABCA1,FC=0.07,p=0.839376564 ABCA1,FC=0.74,p=0.000752228 ABCA1,FC=0.63,p=2.35e-07


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CYLC2,FC=-0.29,p=1.3e-05 SMC2,FC=0.95,p=1.65e-17 SMC2,FC=0.37,p=0.000142474 NIPSNAP3B,FC=-0.23,p=0.000122119 ABCA1,FC=-0.39,p=3.85e-07 ABCA1,FC=-0.85,p=1.12e-23 ABCA1,FC=0.18,p=0.146416984

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CYLC2,FC=-0.68,p=1.98e-08 SMC2,FC=1.48,p=1.08e-20 SMC2,FC=1.62,p=3.29e-47 NIPSNAP3B,FC=-1.84,p=1.95e-35 ABCA1,FC=-1.48,p=1.12e-45 ABCA1,FC=-1.03,p=5.4e-32 ABCA1,FC=1.91,p=3.28e-42


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ADSSL1,FC=0.56,p=5.07e-06 CYLC2,FC=0.52,p=0.002810029 SMC2,FC=0.49,p=0.000285924 SMC2,FC=0.12,p=0.305042845 FLJ36031,FC=-0.25,p=0.142812599 NIPSNAP3A,FC=0.36,p=0.042785448 NIPSNAP3A,FC=-0.46,p=1.47e-06 NIPSNAP3B,FC=-0.03,p=0.843429712 NIPSNAP3B,FC=-0.23,p=0.052657291 ABCA1,FC=0.01,p=0.956473396 ABCA1,FC=-0.23,p=0.014786305 ABCA1,FC=-0.29,p=0.017490267 ABCA1,FC=-0.42,p=0.033159867

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ADSSL1,FC=0.77,p=1.3e-07 CYLC2,FC=0.89,p=5.89e-06 SMC2,FC=1.14,p=2.98e-12 SMC2,FC=0.66,p=1.75e-06 FLJ36031,FC=0.16,p=0.413097544 NIPSNAP3A,FC=0.49,p=0.022743089 NIPSNAP3A,FC=-0.52,p=6.75e-06 NIPSNAP3B,FC=0.21,p=0.072702347 NIPSNAP3B,FC=-0.37,p=0.011534971 ABCA1,FC=0.12,p=0.55058374 ABCA1,FC=-0.00,p=0.976193776 ABCA1,FC=0.02,p=0.85550082 ABCA1,FC=0.01,p=0.957462918


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ,FC=0.00,p=

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ,FC=0.00,p=


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CYLC2,FC=0.07,p=0.537918817 NIPSNAP3A,FC=0.02,p=0.73164537 NIPSNAP3B,FC=0.03,p=0.197937101 ABCA1,FC=-0.03,p=0.220054435

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CYLC2,FC=0.06,p=0.459525295 NIPSNAP3A,FC=0.06,p=0.20831331 NIPSNAP3B,FC=0.04,p=0.065387859 ABCA1,FC=-0.03,p=0.419891614


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

CYLC2,FC=-0.54,p=3.48e-10 SMC2,FC=0.98,p=2.33e-14 SMC2,FC=0.44,p=4.2e-06 NIPSNAP3B,FC=-0.50,p=2.7e-09 ABCA1,FC=-0.56,p=2.18e-11 ABCA1,FC=-0.91,p=1.38e-25 ABCA1,FC=-0.01,p=0.93835341

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-318L4, 2/50, 0.04 RP11-318L4, 10/50, 0.2 RP11-185E13, 3/50, 0.06 RP11-185E13, 10/50, 0.2 RP11-31J20, 6/50, 0.12 RP11-31J20, 2/50, 0.04

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S1112, 22/35, 63%

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