IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.03,p=0.734974933 KLF4,FC=-1.55,p=1.84e-15 IKBKAP,FC=-0.01,p=0.910656687 CTNNAL1,FC=-1.27,p=2.26e-15 PTPN3,FC=0.53,p=2.17e-05 PTPN3,FC=0.33,p=0.074409569

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=-0.08,p=0.336045753 KLF4,FC=-1.49,p=3.91e-10 IKBKAP,FC=0.38,p=0.001783762 CTNNAL1,FC=-1.17,p=1.74e-09 PTPN3,FC=0.73,p=2.16e-08 PTPN3,FC=0.58,p=0.010701745


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=1.36,p=1.26e-39 RAD23B,FC=0.25,p=0.000136949 RAD23B,FC=0.07,p=0.631795984 KLF4,FC=-2.00,p=8.06e-43 KLF4,FC=-2.60,p=1.78e-64 ACTL7B,FC=0.02,p=0.880948278 ACTL7A,FC=-0.29,p=1.14e-05 IKBKAP,FC=-0.12,p=0.026511817 IKBKAP,FC=-0.42,p=0.000276786 C9orf6,FC=-0.15,p=0.05225301 CTNNAL1,FC=-1.48,p=8.12e-66 EPB41L4B,FC=0.02,p=0.78584216 EPB41L4B,FC=0.07,p=0.385689244 PTPN3,FC=0.74,p=1.29e-20

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=2.39,p=1.11e-52 RAD23B,FC=1.95,p=3.74e-76 RAD23B,FC=7.91,p=1.01e-148 KLF4,FC=-4.52,p=8.77e-77 KLF4,FC=-8.08,p=1.4e-163 ACTL7B,FC=3.71,p=2.02e-96 ACTL7A,FC=1.61,p=1.05e-10 IKBKAP,FC=1.79,p=4.68e-89 IKBKAP,FC=4.99,p=6.39e-122 C9orf6,FC=-1.03,p=3.15e-28 CTNNAL1,FC=-2.57,p=7.35e-86 EPB41L4B,FC=-4.91,p=5.95e-99 EPB41L4B,FC=-0.35,p=0.046097509 PTPN3,FC=-1.02,p=6.04e-31


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=-0.51,p=4.71e-14 RAD23B,FC=-0.04,p=0.830381282 RAD23B,FC=-0.15,p=0.065787599 RAD23B,FC=0.23,p=0.017285345 KLF4,FC=-2.54,p=1.52e-37 KLF4,FC=-2.38,p=1.48e-34 ACTL7B,FC=0.28,p=0.045511244 ACTL7A,FC=-0.08,p=0.542777668 IKBKAP,FC=-0.97,p=2.91e-12 IKBKAP,FC=-0.13,p=0.021714172 C9orf6,FC=0.04,p=0.531552554 CTNNAL1,FC=-1.44,p=3.09e-39 C9orf5,FC=-0.10,p=0.384961907 C9orf5,FC=-0.95,p=2.39e-27 C9orf5,FC=-0.77,p=3.73e-20 C9orf5,FC=0.14,p=0.542117236 C9orf5,FC=-0.28,p=0.041116925 C9orf5,FC=-0.63,p=1.32e-09 C9orf4,FC=1.01,p=5.33e-07 EPB41L4B,FC=-0.38,p=0.00317157 EPB41L4B,FC=0.41,p=0.000832933 EPB41L4B,FC=0.31,p=0.010901836 EPB41L4B,FC=-0.20,p=0.277527993 EPB41L4B,FC=-0.21,p=0.3250763 EPB41L4B,FC=0.59,p=0.001252982 PTPN3,FC=0.43,p=8.1e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=-0.53,p=5.16e-11 RAD23B,FC=-0.69,p=0.00175377 RAD23B,FC=-0.05,p=0.653335616 RAD23B,FC=0.19,p=0.079880401 KLF4,FC=-1.70,p=1.1e-22 KLF4,FC=-1.37,p=3.47e-12 ACTL7B,FC=0.10,p=0.498154899 ACTL7A,FC=-0.20,p=0.19155342 IKBKAP,FC=-0.71,p=4.48e-09 IKBKAP,FC=0.09,p=0.178687422 C9orf6,FC=0.17,p=0.018732356 CTNNAL1,FC=-1.31,p=4.42e-18 C9orf5,FC=0.15,p=0.178258764 C9orf5,FC=-1.23,p=7.12e-29 C9orf5,FC=-1.23,p=6.1e-29 C9orf5,FC=0.14,p=0.62249962 C9orf5,FC=-0.06,p=0.585635752 C9orf5,FC=-0.89,p=3.18e-15 C9orf4,FC=2.12,p=6.74e-16 EPB41L4B,FC=-0.19,p=0.098664389 EPB41L4B,FC=0.63,p=1e-06 EPB41L4B,FC=0.21,p=0.086370053 EPB41L4B,FC=0.46,p=0.027119438 EPB41L4B,FC=-0.25,p=0.325266693 EPB41L4B,FC=0.84,p=0.000116987 PTPN3,FC=0.76,p=2.49e-12


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.45,p=0.140911112 RAD23B,FC=-0.08,p=0.834305577 RAD23B,FC=-1.50,p=0.162956328 RAD23B,FC=0.11,p=0.75981978 KLF4,FC=-1.98,p=1.32e-05 IKBKAP,FC=0.88,p=0.00356099 IKBKAP,FC=0.17,p=0.542999373 CTNNAL1,FC=-1.03,p=0.003148246 C9orf5,FC=-0.16,p=0.468898593 C9orf5,FC=-0.26,p=0.305073979 C9orf5,FC=-0.59,p=0.25404638 C9orf5,FC=-0.34,p=0.256927713 PTPN3,FC=0.84,p=0.019140982

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.60,p=0.046383342 RAD23B,FC=-0.17,p=0.666470976 RAD23B,FC=-3.83,p=0.002102832 RAD23B,FC=-0.13,p=0.632649615 KLF4,FC=-1.71,p=0.000820551 IKBKAP,FC=0.82,p=0.007496235 IKBKAP,FC=0.22,p=0.512145569 CTNNAL1,FC=-0.89,p=0.036367421 C9orf5,FC=-0.64,p=0.036112017 C9orf5,FC=-0.89,p=0.010972653 C9orf5,FC=-0.01,p=0.971736626 C9orf5,FC=-1.04,p=0.000431803 PTPN3,FC=0.57,p=0.028298881


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.07,p=0.289861211 KLF4,FC=-0.36,p=6.44e-13 ACTL7B,FC=0.08,p=0.24198759 ACTL7A,FC=0.02,p=0.714620069 IKBKAP,FC=-0.01,p=0.787194561 CTNNAL1,FC=-0.35,p=0.000127097 C9orf5,FC=-0.01,p=0.845549947 C9orf5,FC=-0.27,p=2.31e-05 C9orf4,FC=0.04,p=0.629657605 EPB41L4B,FC=0.06,p=0.041593907 EPB41L4B,FC=0.08,p=0.034990329

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.14,p=0.015868791 KLF4,FC=-0.24,p=0.000339525 ACTL7B,FC=0.07,p=0.394828286 ACTL7A,FC=0.01,p=0.850290213 IKBKAP,FC=0.11,p=0.133432648 CTNNAL1,FC=-0.37,p=0.005682677 C9orf5,FC=-0.14,p=0.001909982 C9orf5,FC=-0.36,p=5.39e-09 C9orf4,FC=0.11,p=0.225928625 EPB41L4B,FC=0.07,p=0.07167318 EPB41L4B,FC=0.07,p=0.065799724


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-32,Mean=-0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-32,Mean=0.06

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RAD23B,FC=1.43,p=3.74e-34 RAD23B,FC=0.20,p=0.003870942 RAD23B,FC=0.43,p=0.006625338 KLF4,FC=-1.71,p=5.58e-24 KLF4,FC=-2.40,p=1.71e-41 ACTL7B,FC=-0.22,p=0.082205357 ACTL7A,FC=-0.33,p=4.44e-05 IKBKAP,FC=-0.16,p=0.000631116 IKBKAP,FC=-0.28,p=0.028443983 C9orf6,FC=-0.15,p=0.04943807 CTNNAL1,FC=-1.47,p=5.39e-54 EPB41L4B,FC=-0.09,p=0.251575679 EPB41L4B,FC=-0.62,p=2.08e-05 PTPN3,FC=0.62,p=2.03e-12

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-438P9, 5/50, 0.1 RP11-438P9, 4/50, 0.08 RP11-400A24, 4/50, 0.08 RP11-400A24, 3/50, 0.06 RP11-388N6, 5/50, 0.1 RP11-388N6, 3/50, 0.06

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

PMID=10987304 D9S1677, 8/13, 62%

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