IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-0.99,p=7.18e-18 FKBP15,FC=-0.22,p=1.34e-05 SLC31A1,FC=0.02,p=0.871517643 PRPF4,FC=0.24,p=0.000569658 PRPF4,FC=0.07,p=0.352581215 ALAD,FC=0.58,p=0.00011061 POLE3,FC=0.04,p=0.579808469 RGS3,FC=-0.37,p=9.28e-05 AMBP,FC=0.74,p=0.001123695 ATP6V1G1,FC=-0.15,p=0.045752486 C9orf91,FC=-0.50,p=0.051104964 TNFSF8,FC=-0.36,p=0.01555352 TNC,FC=0.19,p=0.473112457 TNC,FC=0.29,p=0.256219888

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-1.06,p=2.92e-14 FKBP15,FC=-0.43,p=1.52e-06 SLC31A1,FC=-0.21,p=0.136053481 PRPF4,FC=0.73,p=1.59e-09 PRPF4,FC=0.66,p=1.17e-08 ALAD,FC=0.63,p=0.00135372 POLE3,FC=0.56,p=3.15e-08 RGS3,FC=-1.13,p=9.46e-15 AMBP,FC=0.33,p=0.010831197 ATP6V1G1,FC=0.04,p=0.687308684 C9orf91,FC=-0.92,p=0.007821266 TNFSF8,FC=-0.90,p=0.000145346 TNC,FC=0.94,p=0.001863637 TNC,FC=0.41,p=0.28441258


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-1.15,p=1.63e-31 FKBP15,FC=1.20,p=5.88e-17 FKBP15,FC=-0.48,p=8.29e-27 FKBP15,FC=-0.57,p=1.17e-30 SLC31A1,FC=0.29,p=6.43e-05 PRPF4,FC=1.10,p=1.52e-32 PRPF4,FC=0.54,p=3.49e-16 BSPRY,FC=0.64,p=1.13e-13 HDHD3,FC=1.17,p=6.47e-31 ALAD,FC=-0.14,p=0.091684127 ALAD,FC=1.72,p=2.74e-42 POLE3,FC=0.32,p=2.55e-09 RGS3,FC=-0.48,p=6.75e-09 RGS3,FC=-0.30,p=0.008618665 AMBP,FC=0.56,p=0.008220954 ORM1,FC=0.29,p=0.155027339 ORM1,FC=0.71,p=0.005038545 DFNB31,FC=0.55,p=0.000223173 DFNB31,FC=-0.13,p=0.290917894 ATP6V1G1,FC=0.15,p=0.009141661 C9orf91,FC=0.14,p=0.00668247 TNFSF15,FC=0.61,p=2.4e-08 TNFSF8,FC=-0.37,p=3.47e-07 TNC,FC=0.09,p=0.525236792 TNC,FC=0.79,p=7.79e-06 DEC1,FC=-0.62,p=1.06e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-0.69,p=2.04e-17 FKBP15,FC=2.65,p=8.59e-46 FKBP15,FC=-2.80,p=1.34e-86 FKBP15,FC=-4.02,p=1.56e-100 SLC31A1,FC=1.41,p=5.13e-42 PRPF4,FC=3.50,p=1.9e-92 PRPF4,FC=1.66,p=1.46e-44 BSPRY,FC=1.98,p=4.46e-68 HDHD3,FC=0.28,p=0.009679659 ALAD,FC=3.06,p=1.81e-105 ALAD,FC=5.24,p=8.35e-115 POLE3,FC=-3.94,p=1.34e-106 RGS3,FC=-3.37,p=6.5e-85 RGS3,FC=0.78,p=7.71e-13 AMBP,FC=5.86,p=3.78e-156 ORM1,FC=2.31,p=7.26e-49 ORM1,FC=1.90,p=3.88e-31 DFNB31,FC=-1.39,p=6.34e-18 DFNB31,FC=0.35,p=0.00018157 ATP6V1G1,FC=-6.17,p=1.67e-145 C9orf91,FC=-5.10,p=1.4e-137 TNFSF15,FC=0.20,p=0.041120273 TNFSF8,FC=-1.59,p=7.09e-31 TNC,FC=2.01,p=2.59e-38 TNC,FC=2.45,p=1.54e-83 DEC1,FC=-0.02,p=0.823357176


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf109,FC=0.10,p=0.607721157 SLC31A2,FC=-1.36,p=3.07e-29 FKBP15,FC=0.06,p=0.766981436 FKBP15,FC=-0.55,p=2.85e-19 FKBP15,FC=-0.15,p=0.586220072 FKBP15,FC=-0.53,p=2.29e-13 FKBP15,FC=-0.10,p=0.639345289 SLC31A1,FC=-0.37,p=0.005032575 SLC31A1,FC=-1.13,p=1.84e-16 PRPF4,FC=0.26,p=0.000599181 PRPF4,FC=0.22,p=0.108075819 RNF183,FC=1.10,p=4.44e-06 WDR31,FC=0.25,p=0.054215384 BSPRY,FC=0.52,p=3.96e-05 BSPRY,FC=0.94,p=2.98e-15 HDHD3,FC=0.98,p=8.04e-23 ALAD,FC=-0.48,p=1.97e-08 ALAD,FC=0.94,p=1.81e-17 POLE3,FC=0.54,p=5.15e-11 C9orf43,FC=0.01,p=0.959988273 RGS3,FC=0.14,p=0.11320815 RGS3,FC=-0.67,p=3.17e-13 RGS3,FC=-0.51,p=0.004681724 ZNF618,FC=0.23,p=0.026730357 ZNF618,FC=0.16,p=0.177118736 ZNF618,FC=0.13,p=0.266618461 AMBP,FC=0.36,p=0.230165792 KIF12,FC=0.60,p=0.001716118 COL27A1,FC=-0.07,p=0.731390279 COL27A1,FC=0.41,p=0.033135443 COL27A1,FC=0.31,p=0.02229073 COL27A1,FC=0.22,p=0.094535179 COL27A1,FC=0.05,p=0.698922529 ORM1,FC=-0.49,p=0.0475516 ORM1,FC=-0.93,p=0.000193877 AKNA,FC=-0.55,p=1.02e-05 DFNB31,FC=-0.21,p=0.214344754 DFNB31,FC=0.14,p=0.419273907 ATP6V1G1,FC=-0.04,p=0.622746441 ATP6V1G1,FC=0.05,p=0.529927326 C9orf91,FC=0.14,p=0.074905809 TNFSF15,FC=0.12,p=0.483059927 TNFSF8,FC=-0.33,p=0.039985161 TNC,FC=0.58,p=0.010245751 TNC,FC=0.34,p=0.07265986 TNC,FC=-1.18,p=3.56e-07 TNC,FC=-0.68,p=0.00023342 DEC1,FC=0.63,p=0.000424165

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf109,FC=-0.77,p=0.001390546 SLC31A2,FC=-1.66,p=4.26e-22 FKBP15,FC=0.37,p=0.023117698 FKBP15,FC=-0.52,p=5.26e-11 FKBP15,FC=-0.58,p=0.016422663 FKBP15,FC=-0.47,p=5.37e-09 FKBP15,FC=-0.13,p=0.565643713 SLC31A1,FC=-0.96,p=1.96e-08 SLC31A1,FC=-1.23,p=2.86e-11 PRPF4,FC=0.90,p=5.79e-16 PRPF4,FC=0.95,p=3.13e-12 RNF183,FC=0.76,p=0.000851615 WDR31,FC=0.51,p=0.001410426 BSPRY,FC=-0.70,p=7.73e-07 BSPRY,FC=0.09,p=0.470751626 HDHD3,FC=0.82,p=8.15e-09 ALAD,FC=-1.00,p=4.38e-15 ALAD,FC=1.14,p=1.6e-18 POLE3,FC=1.23,p=8.39e-30 C9orf43,FC=0.28,p=0.099204418 RGS3,FC=0.05,p=0.646645369 RGS3,FC=-1.07,p=4.62e-17 RGS3,FC=-0.74,p=9.19e-05 ZNF618,FC=0.26,p=0.049793098 ZNF618,FC=0.12,p=0.345775548 ZNF618,FC=0.21,p=0.069331053 AMBP,FC=-1.32,p=2.37e-11 KIF12,FC=-0.08,p=0.675602626 COL27A1,FC=0.58,p=0.011291878 COL27A1,FC=1.05,p=1.85e-05 COL27A1,FC=1.15,p=6.74e-16 COL27A1,FC=0.74,p=4.78e-07 COL27A1,FC=0.07,p=0.674041136 ORM1,FC=-2.11,p=8.27e-17 ORM1,FC=-2.14,p=1.03e-17 AKNA,FC=-1.17,p=3.33e-10 DFNB31,FC=-0.28,p=0.130810088 DFNB31,FC=-0.13,p=0.517427834 ATP6V1G1,FC=0.15,p=0.057616561 ATP6V1G1,FC=0.03,p=0.65817757 C9orf91,FC=0.35,p=2.18e-05 TNFSF15,FC=-0.60,p=0.000346289 TNFSF8,FC=-0.66,p=0.000307346 TNC,FC=0.42,p=0.073939541 TNC,FC=0.97,p=3.11e-06 TNC,FC=-1.09,p=3.25e-05 TNC,FC=-0.29,p=0.116746632 DEC1,FC=0.84,p=6.68e-05


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-1.35,p=4.45e-05 SLC31A1,FC=-0.36,p=0.14245963 POLE3,FC=0.59,p=0.022278191

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-1.44,p=0.00074171 SLC31A1,FC=-0.27,p=0.3157001 POLE3,FC=1.17,p=0.001235022


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-0.46,p=4.13e-09 SLC31A1,FC=-0.18,p=1.97e-06 SLC31A1,FC=0.01,p=0.74467061 PRPF4,FC=0.02,p=0.596431995 BSPRY,FC=0.08,p=0.504200344 HDHD3,FC=0.08,p=0.065176567 ALAD,FC=-0.04,p=0.389639502 POLE3,FC=-0.03,p=0.705488061 C9orf43,FC=0.04,p=0.000190575 RGS3,FC=-0.20,p=1.12e-07 ZNF618,FC=0.02,p=0.793071293 AMBP,FC=0.03,p=0.876705215 KIF12,FC=-0.00,p=0.949882883 COL27A1,FC=0.16,p=0.025381091 COL27A1,FC=-0.04,p=0.316556001 ORM1,FC=-0.08,p=0.371672416 DFNB31,FC=0.01,p=0.618117605 ATP6V1G1,FC=0.31,p=3.5e-05 C9orf91,FC=0.01,p=0.628482284 TNFSF15,FC=0.02,p=0.562644092 TNFSF8,FC=-0.11,p=0.000497739 TNFSF8,FC=0.08,p=0.046009861 TNC,FC=0.41,p=0.00531625

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SLC31A2,FC=-0.50,p=1.58e-10 SLC31A1,FC=-0.21,p=2.84e-05 SLC31A1,FC=0.01,p=0.514470579 PRPF4,FC=0.07,p=0.123314925 BSPRY,FC=-0.34,p=0.006626433 HDHD3,FC=0.07,p=0.06435298 ALAD,FC=-0.06,p=0.102480217 POLE3,FC=0.14,p=0.056965938 C9orf43,FC=0.04,p=0.013197889 RGS3,FC=-0.26,p=8.04e-12 ZNF618,FC=-0.03,p=0.663463823 AMBP,FC=-0.17,p=0.063037523 KIF12,FC=0.02,p=0.71884318 COL27A1,FC=0.20,p=0.033178968 COL27A1,FC=-0.03,p=0.563844696 ORM1,FC=-0.19,p=0.001929962 DFNB31,FC=0.02,p=0.489481866 ATP6V1G1,FC=0.36,p=8.93e-06 C9orf91,FC=0.01,p=0.707354155 TNFSF15,FC=-0.02,p=0.528776616 TNFSF8,FC=-0.11,p=0.002052707 TNFSF8,FC=0.07,p=0.079959825 TNC,FC=0.55,p=0.000613881


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-455,Mean=-0.03

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-455,Mean=0.02

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

SLC31A2,FC=-1.21,p=1.46e-26 FKBP15,FC=2.07,p=8.74e-36 FKBP15,FC=-0.59,p=8.14e-28 FKBP15,FC=-0.54,p=1.45e-23 SLC31A1,FC=0.58,p=3.94e-08 PRPF4,FC=1.37,p=4.66e-31 PRPF4,FC=0.56,p=3.54e-13 BSPRY,FC=0.57,p=1.08e-09 HDHD3,FC=1.30,p=6.19e-30 ALAD,FC=-0.03,p=0.776344433 ALAD,FC=2.22,p=8.68e-58 POLE3,FC=0.36,p=1.43e-07 RGS3,FC=-0.45,p=1.56e-08 RGS3,FC=-0.57,p=2.13e-05 AMBP,FC=0.29,p=0.091096422 ORM1,FC=0.28,p=0.19623332 ORM1,FC=0.89,p=0.000399627 DFNB31,FC=0.54,p=0.001110874 DFNB31,FC=-0.58,p=0.000113003 ATP6V1G1,FC=0.43,p=3.17e-10 C9orf91,FC=0.20,p=0.000548578 TNFSF15,FC=1.25,p=3.64e-21 TNFSF8,FC=-0.54,p=5.71e-10 TNC,FC=-0.07,p=0.630235862 TNC,FC=0.83,p=7.86e-07 DEC1,FC=-0.79,p=7.81e-09

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-534I8, 12/50, 0.24 RP11-534I8, 4/50, 0.08 RP11-78H18, 6/50, 0.12 RP11-78H18, 4/50, 0.08 RP11-445L6, 4/50, 0.08 RP11-445L6, 6/50, 0.12 RP11-382H18, 3/50, 0.06 RP11-382H18, 10/50, 0.2

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11391799

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

PMID=10987304 D9S1776, 10/16, 63%

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