IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.01,p=0.940778605 DBC1,FC=0.14,p=0.599232501

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.59,p=0.03791113 DBC1,FC=-0.50,p=0.09931325


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.05,p=0.695669017 ASTN2,FC=0.09,p=0.443266051 ASTN2,FC=0.19,p=0.159416122 TLR4,FC=-0.60,p=1.69e-12 DBC1,FC=-0.53,p=9.71e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=4.28,p=1.08e-96 ASTN2,FC=1.66,p=6.45e-36 ASTN2,FC=-1.17,p=3.35e-08 TLR4,FC=-1.59,p=7.78e-44 DBC1,FC=-1.99,p=9.93e-25


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.06,p=0.664057385 ASTN2,FC=0.33,p=0.141757492 ASTN2,FC=-0.07,p=0.64952128 ASTN2,FC=0.47,p=0.021242917 TLR4,FC=-1.60,p=6.51e-19 TLR4,FC=-0.67,p=7.05e-07 TLR4,FC=-1.15,p=4.25e-07 TLR4,FC=-1.52,p=1.27e-16 DBC1,FC=0.16,p=0.489222534 DBC1,FC=0.10,p=0.590732989

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.02,p=0.943948409 ASTN2,FC=0.62,p=0.014947017 ASTN2,FC=0.01,p=0.940767721 ASTN2,FC=1.24,p=6.97e-08 TLR4,FC=-2.31,p=1.59e-21 TLR4,FC=-0.91,p=6.35e-10 TLR4,FC=-2.02,p=9.14e-14 TLR4,FC=-2.03,p=1.32e-17 DBC1,FC=0.14,p=0.566734603 DBC1,FC=0.03,p=0.894140513


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ,FC=0.00,p=

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ,FC=0.00,p=


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.04,p=0.205030644 TLR4,FC=-0.23,p=2.54e-06 DBC1,FC=0.05,p=0.09539765 DBC1,FC=-0.07,p=0.445947676

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ASTN2,FC=-0.05,p=0.244291626 TLR4,FC=-0.22,p=7.03e-06 DBC1,FC=0.05,p=0.024307184 DBC1,FC=-0.10,p=0.164558443


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

ASTN2,FC=0.25,p=0.057648319 ASTN2,FC=0.09,p=0.470496064 ASTN2,FC=0.15,p=0.332986361 TLR4,FC=-0.49,p=1.81e-07 DBC1,FC=-0.78,p=1.55e-09

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-388N2, 6/50, 0.12 RP11-388N2, 18/50, 0.36 RP11-451E16, 4/50, 0.08 RP11-451E16, 16/50, 0.32 RP11-574M5, 2/50, 0.04 RP11-574M5, 14/50, 0.28 RP11-28O4, 6/50, 0.12 RP11-28O4, 5/50, 0.1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D9S934, 4/20, 20% PMID=15900585 D9S934, 4/18, 22%

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