IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTGS1,FC=-0.60,p=9.8e-05 PDCL,FC=-0.72,p=0.002590868 ZBTB6,FC=0.02,p=0.921597372 RABGAP1,FC=-0.50,p=1.5e-06 LHX2,FC=-0.10,p=0.554200078 LHX2,FC=0.51,p=0.014949531 PSMB7,FC=0.13,p=0.081342105 PSMB7,FC=-0.06,p=0.46997897 NR5A1,FC=0.51,p=0.002107343 NR6A1,FC=-0.01,p=0.958806883 OLFML2A,FC=-0.76,p=1.22e-10 GOLGA1,FC=-0.57,p=0.01567072 GOLGA1,FC=0.11,p=0.101922278

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTGS1,FC=-0.79,p=6.86e-06 PDCL,FC=-1.56,p=1.16e-05 ZBTB6,FC=0.04,p=0.910180357 RABGAP1,FC=-0.04,p=0.776998599 LHX2,FC=0.14,p=0.543956987 LHX2,FC=0.98,p=7.08e-05 PSMB7,FC=0.51,p=1.96e-06 PSMB7,FC=0.49,p=8.89e-07 NR5A1,FC=0.37,p=0.067388017 NR6A1,FC=0.42,p=0.115950429 OLFML2A,FC=-0.38,p=0.018369782 GOLGA1,FC=0.18,p=0.578890953 GOLGA1,FC=0.13,p=0.176700304


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NDUFA8,FC=-0.18,p=0.000920321 LHX6,FC=-1.01,p=4.04e-23 PTGS1,FC=-0.24,p=0.000224295 PTGS1,FC=-0.23,p=0.000961561 PTGS1,FC=-0.08,p=0.460544986 PDCL,FC=-0.19,p=0.021310946 PDCL,FC=-0.19,p=0.000470653 RC3H2,FC=-0.08,p=0.233407654 RC3H2,FC=0.07,p=0.236335957 ZBTB6,FC=0.16,p=0.18131859 RABGAP1,FC=-0.56,p=2.49e-24 RABGAP1,FC=-0.40,p=3.33e-12 RABGAP1,FC=0.12,p=0.30267631 LHX2,FC=-0.30,p=0.062147577 LHX2,FC=0.32,p=0.051705094 PSMB7,FC=0.16,p=0.002376865 GPR144,FC=0.96,p=5.19e-13 NR5A1,FC=0.67,p=3.5e-08 NR6A1,FC=0.18,p=0.091316081 NR6A1,FC=0.25,p=0.064832466 NR6A1,FC=-0.05,p=0.600644114 OLFML2A,FC=-1.23,p=3.67e-44 ARPC5L,FC=0.47,p=1.78e-17 GOLGA1,FC=-0.19,p=1.53e-05 GOLGA1,FC=0.25,p=3.95e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NDUFA8,FC=-3.23,p=1.28e-97 LHX6,FC=-0.97,p=1.22e-19 PTGS1,FC=-2.79,p=4.82e-100 PTGS1,FC=0.92,p=5.03e-26 PTGS1,FC=2.54,p=9.35e-70 PDCL,FC=2.12,p=5.11e-97 PDCL,FC=-1.32,p=4.52e-27 RC3H2,FC=-0.42,p=0.000129782 RC3H2,FC=-0.87,p=2e-17 ZBTB6,FC=-0.94,p=5.85e-13 RABGAP1,FC=-2.09,p=3.44e-79 RABGAP1,FC=-3.13,p=6.44e-125 RABGAP1,FC=2.41,p=7.05e-57 LHX2,FC=1.59,p=7.7e-27 LHX2,FC=4.36,p=4.33e-100 PSMB7,FC=-1.65,p=1.08e-42 GPR144,FC=3.43,p=7.17e-71 NR5A1,FC=5.62,p=5.46e-105 NR6A1,FC=3.65,p=1.19e-97 NR6A1,FC=-2.13,p=5.54e-37 NR6A1,FC=3.88,p=7.85e-130 OLFML2A,FC=-0.70,p=2.26e-12 ARPC5L,FC=-5.15,p=1.49e-101 GOLGA1,FC=2.55,p=1.29e-100 GOLGA1,FC=0.50,p=1.78e-14


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NDUFA8,FC=0.17,p=0.026611526 MORN5,FC=-1.10,p=1.06e-07 LHX6,FC=-0.17,p=0.228883763 LHX6,FC=-0.56,p=1.07e-06 RBM18,FC=-0.07,p=0.30548631 MRRF,FC=0.31,p=0.000121913 PTGS1,FC=-0.98,p=3.88e-16 PTGS1,FC=-0.16,p=0.108899695 PTGS1,FC=-1.00,p=1.26e-07 PTGS1,FC=-0.17,p=0.129783815 OR1J2,FC=0.75,p=0.000455774 OR1J4,FC=0.04,p=0.863287432 OR1Q1,FC=0.37,p=0.055455882 PDCL,FC=-0.87,p=5.69e-13 PDCL,FC=0.18,p=0.00883235 RC3H2,FC=-0.08,p=0.463717045 RC3H2,FC=-0.53,p=1.12e-06 RC3H2,FC=-0.57,p=0.001904296 RC3H2,FC=-0.47,p=3.88e-08 RC3H2,FC=-0.08,p=0.394639949 ZBTB6,FC=0.17,p=0.249308343 ZBTB26,FC=0.27,p=0.082191753 RABGAP1,FC=-0.05,p=0.454234257 RABGAP1,FC=-0.38,p=0.012548329 RABGAP1,FC=-0.62,p=2.44e-16 C9orf45,FC=0.25,p=0.008807965 STRBP,FC=0.25,p=0.143733914 STRBP,FC=0.95,p=3.08e-27 STRBP,FC=0.67,p=3.28e-20 STRBP,FC=0.03,p=0.916995967 CRB2,FC=0.13,p=0.507102309 DENND1A,FC=-0.08,p=0.381402741 LHX2,FC=0.96,p=0.000167453 LHX2,FC=0.58,p=0.004346417 NEK6,FC=0.49,p=1.35e-07 NEK6,FC=0.47,p=9.89e-10 NEK6,FC=0.19,p=0.186718095 NEK6,FC=-0.28,p=0.132059521 PSMB7,FC=-0.91,p=1.37e-05 PSMB7,FC=0.07,p=0.280944641 LOC100129034,FC=0.64,p=0.00064362 LOC100129034,FC=0.00,p=0.962056631 GPR144,FC=-0.04,p=0.79680442 NR5A1,FC=-0.06,p=0.736750284 NR6A1,FC=0.18,p=0.306148773 NR6A1,FC=-0.03,p=0.855697605 NR6A1,FC=0.33,p=0.04526594 OLFML2A,FC=-1.22,p=1.43e-13 WDR38,FC=0.42,p=0.07093387 ARPC5L,FC=0.23,p=0.000622301 ARPC5L,FC=0.36,p=9.83e-08 ARPC5L,FC=0.25,p=0.000938025 ARPC5L,FC=-0.09,p=0.246372481 GOLGA1,FC=0.56,p=2.3e-14 GOLGA1,FC=0.01,p=0.910210404 GOLGA1,FC=0.36,p=0.057107175

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NDUFA8,FC=0.15,p=0.142427347 MORN5,FC=-1.19,p=1.33e-06 LHX6,FC=-0.18,p=0.290598983 LHX6,FC=-0.42,p=0.014980442 RBM18,FC=0.19,p=0.011342985 MRRF,FC=0.69,p=1.27e-16 PTGS1,FC=-1.18,p=3.58e-16 PTGS1,FC=-0.30,p=0.015177358 PTGS1,FC=-1.07,p=1.25e-07 PTGS1,FC=-0.34,p=0.010740377 OR1J2,FC=1.15,p=2.9e-05 OR1J4,FC=0.44,p=0.070126589 OR1Q1,FC=1.06,p=3.96e-07 PDCL,FC=-1.15,p=2.4e-11 PDCL,FC=0.15,p=0.078066713 RC3H2,FC=-0.33,p=0.021785496 RC3H2,FC=-0.37,p=0.000409024 RC3H2,FC=-0.78,p=0.00033956 RC3H2,FC=-0.47,p=8.1e-07 RC3H2,FC=0.34,p=0.002993073 ZBTB6,FC=0.25,p=0.108303435 ZBTB26,FC=0.43,p=0.022139938 RABGAP1,FC=0.18,p=0.01299736 RABGAP1,FC=-0.42,p=0.006296232 RABGAP1,FC=-0.61,p=2.39e-11 C9orf45,FC=0.76,p=7.99e-11 STRBP,FC=0.13,p=0.561258663 STRBP,FC=1.49,p=1.33e-29 STRBP,FC=0.90,p=2.69e-17 STRBP,FC=-0.48,p=0.068179044 CRB2,FC=0.49,p=0.030095656 DENND1A,FC=0.49,p=3.83e-07 LHX2,FC=2.20,p=1.71e-10 LHX2,FC=1.45,p=4.6e-08 NEK6,FC=-0.02,p=0.848972754 NEK6,FC=-0.21,p=0.037752724 NEK6,FC=0.70,p=3.64e-06 NEK6,FC=-0.33,p=0.111063182 PSMB7,FC=-1.87,p=3.26e-13 PSMB7,FC=0.19,p=0.023505908 LOC100129034,FC=0.49,p=0.019634928 LOC100129034,FC=-0.50,p=4.96e-07 GPR144,FC=0.13,p=0.439688691 NR5A1,FC=-0.12,p=0.541195842 NR6A1,FC=0.31,p=0.095171692 NR6A1,FC=0.05,p=0.764132338 NR6A1,FC=0.47,p=0.012583171 OLFML2A,FC=-0.41,p=0.018436746 WDR38,FC=0.19,p=0.469584346 ARPC5L,FC=0.42,p=4.13e-07 ARPC5L,FC=0.62,p=3e-16 ARPC5L,FC=0.58,p=2.85e-10 ARPC5L,FC=-0.13,p=0.149404624 GOLGA1,FC=0.81,p=6.46e-20 GOLGA1,FC=-0.08,p=0.325161451 GOLGA1,FC=-0.26,p=0.187926657


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      MRRF,FC=1.00,p=0.000121879 PTGS1,FC=0.65,p=0.009338887 PTGS1,FC=-0.02,p=0.94439381 PDCL,FC=-0.35,p=0.262060104 STRBP,FC=0.63,p=0.047562955 LHX2,FC=1.31,p=0.00594527 NEK6,FC=0.38,p=0.121598789 PSMB7,FC=0.53,p=0.045245466 NR6A1,FC=0.57,p=0.02117096 GOLGA1,FC=0.19,p=0.376534653

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      MRRF,FC=1.15,p=0.000945083 PTGS1,FC=0.50,p=0.034758307 PTGS1,FC=-0.36,p=0.250180217 PDCL,FC=0.03,p=0.944443646 STRBP,FC=0.94,p=0.009837747 LHX2,FC=2.44,p=3.57e-06 NEK6,FC=-0.28,p=0.308782316 PSMB7,FC=0.91,p=0.002488609 NR6A1,FC=0.57,p=0.051086917 GOLGA1,FC=-0.20,p=0.418730914


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NDUFA8,FC=0.13,p=0.030133066 LHX6,FC=-0.11,p=0.0004355 RBM18,FC=-0.02,p=0.619106069 RBM18,FC=0.12,p=1.73e-07 MRRF,FC=-0.02,p=0.727164663 PTGS1,FC=-0.28,p=8.06e-08 PDCL,FC=0.00,p=0.949906438 ZBTB26,FC=0.01,p=0.850479417 RABGAP1,FC=0.00,p=0.698977533 STRBP,FC=0.11,p=0.000108791 STRBP,FC=0.18,p=0.035083618 LHX2,FC=0.16,p=0.000382846 NEK6,FC=0.02,p=0.29307841 PSMB7,FC=0.14,p=0.025408167 PSMB7,FC=-0.02,p=0.348959969 NR5A1,FC=0.03,p=0.438930888 NR6A1,FC=-0.03,p=0.048001262 OLFML2A,FC=0.03,p=0.745992702 ARPC5L,FC=0.14,p=0.030675283 GOLGA1,FC=0.00,p=0.83503209

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NDUFA8,FC=0.31,p=0.000250061 LHX6,FC=-0.09,p=0.05675092 RBM18,FC=0.02,p=0.599133592 RBM18,FC=0.16,p=8.57e-07 MRRF,FC=0.06,p=0.276669667 PTGS1,FC=-0.32,p=1.18e-08 PDCL,FC=-0.00,p=0.847203545 ZBTB26,FC=0.01,p=0.864292739 RABGAP1,FC=0.00,p=0.963265728 STRBP,FC=0.17,p=0.000379513 STRBP,FC=0.18,p=0.063443488 LHX2,FC=0.25,p=0.019634665 NEK6,FC=-0.02,p=0.427268956 PSMB7,FC=0.33,p=3.16e-05 PSMB7,FC=-0.02,p=0.272718514 NR5A1,FC=0.04,p=0.246501403 NR6A1,FC=-0.03,p=0.062966556 OLFML2A,FC=-0.04,p=0.572335659 ARPC5L,FC=0.24,p=3.02e-05 GOLGA1,FC=-0.00,p=0.836954876


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-601,Mean=0.72

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-601,Mean=0.80

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-600,Mean=0.02 hsa-mir-601,Mean=0.12 hsa-mir-181a-2,Mean=-0.01 hsa-mir-181b-2,Mean=0.02

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-600,Mean=0.06 hsa-mir-601,Mean=0.11 hsa-mir-181a-2,Mean=-0.12 hsa-mir-181b-2,Mean=-0.10

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

NDUFA8,FC=-0.39,p=7e-13 LHX6,FC=-1.17,p=2.4e-23 PTGS1,FC=-0.36,p=6.03e-09 PTGS1,FC=-0.33,p=6.95e-07 PTGS1,FC=-0.46,p=0.00079899 PDCL,FC=-0.22,p=0.002471719 PDCL,FC=-0.22,p=0.000133958 RC3H2,FC=-0.26,p=0.0004217 RC3H2,FC=0.03,p=0.595282258 ZBTB6,FC=0.79,p=5.21e-07 RABGAP1,FC=-0.61,p=4.83e-20 RABGAP1,FC=-0.51,p=4.05e-18 RABGAP1,FC=0.27,p=0.037948212 LHX2,FC=-0.64,p=0.000266809 LHX2,FC=0.35,p=0.061597217 PSMB7,FC=0.01,p=0.911587484 GPR144,FC=1.01,p=4.57e-14 NR5A1,FC=0.68,p=3.62e-05 NR6A1,FC=-0.03,p=0.835222155 NR6A1,FC=0.24,p=0.132634995 NR6A1,FC=-0.46,p=3.6e-05 OLFML2A,FC=-1.25,p=1.04e-32 ARPC5L,FC=0.27,p=3.38e-06 GOLGA1,FC=-0.23,p=2.8e-07 GOLGA1,FC=-0.02,p=0.745194467

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-137O6, 2/50, 0.04 RP11-137O6, 1/50, 0.02 RP11-417B4, 0/50, 0 RP11-417B4, 4/50, 0.08 RP11-101K10, 14/50, 0.28 RP11-101K10, 2/50, 0.04

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

PMID=10987304 D9S1682, 6/12, 50%

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