IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , TEK, 0.99%, 2/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PLAA,FC=-0.30,p=0.251669156 TEK,FC=-1.67,p=5.97e-17 TEK,FC=-3.28,p=1.59e-36

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PLAA,FC=0.04,p=0.913272686 TEK,FC=-2.49,p=9.7e-17 TEK,FC=-3.93,p=7.69e-23


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf82,FC=0.39,p=1.45e-08 PLAA,FC=-0.11,p=0.260132573 PLAA,FC=0.06,p=0.394902837 IFT74,FC=-0.39,p=0.047847696 IFT74,FC=-0.75,p=6.76e-07 LRRC19,FC=-0.48,p=0.000651646 TEK,FC=-2.70,p=1.33e-106 TEK,FC=-0.86,p=2.76e-14 MOBKL2B,FC=-0.30,p=9.57e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf82,FC=-0.97,p=2.72e-14 PLAA,FC=5.26,p=1.15e-117 PLAA,FC=2.46,p=4.34e-90 IFT74,FC=4.18,p=2.27e-92 IFT74,FC=3.06,p=1.11e-68 LRRC19,FC=2.93,p=5.6e-63 TEK,FC=-5.96,p=1.84e-101 TEK,FC=-1.44,p=1.43e-21 MOBKL2B,FC=-0.21,p=0.011287561


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TUSC1,FC=-0.50,p=4.27e-06 C9orf82,FC=0.17,p=0.064222594 C9orf82,FC=-0.17,p=0.177410214 PLAA,FC=-0.58,p=1.13e-08 PLAA,FC=-0.60,p=3e-05 PLAA,FC=0.01,p=0.889230601 IFT74,FC=-0.27,p=0.015003319 IFT74,FC=-0.71,p=8.24e-07 LRRC19,FC=-0.62,p=0.00598988 TEK,FC=0.64,p=0.00587704 TEK,FC=-2.47,p=1.77e-53 C9orf11,FC=0.05,p=0.771804339 C9orf11,FC=-0.44,p=0.076619653 C9orf11,FC=-0.15,p=0.398773674 MOBKL2B,FC=-0.93,p=1.63e-15 MOBKL2B,FC=-0.75,p=2.4e-10 MOBKL2B,FC=-0.41,p=0.000114945 MOBKL2B,FC=-0.36,p=0.001809571 IFNK,FC=0.02,p=0.912211582 C9orf72,FC=-0.63,p=9.67e-16 C9orf72,FC=-1.16,p=1.14e-08 C9orf72,FC=-1.58,p=1.62e-20 LINGO2,FC=0.91,p=2.58e-08

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TUSC1,FC=-0.28,p=0.009913318 C9orf82,FC=-0.28,p=0.013239217 C9orf82,FC=-0.78,p=2.7e-07 PLAA,FC=-0.78,p=3.03e-14 PLAA,FC=-0.80,p=1.75e-07 PLAA,FC=-0.19,p=0.060092486 IFT74,FC=-0.86,p=4.19e-07 IFT74,FC=-1.32,p=9.68e-10 LRRC19,FC=-0.64,p=0.003639723 TEK,FC=1.39,p=1.54e-06 TEK,FC=-3.32,p=4.55e-31 C9orf11,FC=0.32,p=0.086982387 C9orf11,FC=-0.94,p=0.001322172 C9orf11,FC=-0.26,p=0.157533082 MOBKL2B,FC=-1.22,p=7.23e-22 MOBKL2B,FC=-0.86,p=1.38e-11 MOBKL2B,FC=-0.12,p=0.267540105 MOBKL2B,FC=-0.00,p=0.991245887 IFNK,FC=-0.31,p=0.252926668 C9orf72,FC=-0.53,p=3.14e-06 C9orf72,FC=-1.21,p=3.45e-07 C9orf72,FC=-1.60,p=2.31e-13 LINGO2,FC=1.41,p=3.45e-16


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TEK,FC=-2.08,p=4.84e-09

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TEK,FC=-2.45,p=5.37e-08


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf82,FC=-0.01,p=0.902287448 PLAA,FC=0.01,p=0.805120328 LRRC19,FC=-0.04,p=0.669046831 TEK,FC=0.07,p=0.44107866 MOBKL2B,FC=-0.02,p=0.328465259 MOBKL2B,FC=0.00,p=0.938296132 IFNK,FC=-0.00,p=0.965134111 C9orf72,FC=-0.09,p=0.064639913 C9orf72,FC=-0.02,p=0.461655341

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf82,FC=-0.01,p=0.672124722 PLAA,FC=0.01,p=0.647087375 LRRC19,FC=0.01,p=0.949182857 TEK,FC=0.03,p=0.469880768 MOBKL2B,FC=-0.03,p=0.082460898 MOBKL2B,FC=-0.03,p=0.488032405 IFNK,FC=-0.00,p=0.998905457 C9orf72,FC=-0.07,p=0.351651993 C9orf72,FC=-0.02,p=0.357603553


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

C9orf82,FC=0.44,p=1.67e-08 PLAA,FC=0.20,p=0.064111588 PLAA,FC=0.12,p=0.14999433 IFT74,FC=0.54,p=0.006285864 IFT74,FC=-0.09,p=0.608106545 LRRC19,FC=-1.06,p=1.8e-09 TEK,FC=-2.57,p=4.36e-66 TEK,FC=-0.85,p=1.56e-10 MOBKL2B,FC=-0.34,p=1.35e-06

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-33K8, 0/50, 0 RP11-33K8, 12/50, 0.24 RP11-468C2, 1/50, 0.02 RP11-468C2, 11/50, 0.22 RP11-33G16, 1/50, 0.02 RP11-33G16, 16/50, 0.32 RP11-5P15, 2/50, 0.04 RP11-5P15, 11/50, 0.22 RP11-27J8, 3/50, 0.06 RP11-27J8, 15/50, 0.3 RP11-20P5, 3/50, 0.06 RP11-20P5, 13/50, 0.26 RP11-264J11, 5/50, 0.1 RP11-264J11, 17/50, 0.34 RP11-383F6, 3/50, 0.06 RP11-383F6, 21/50, 0.42 RP11-48L13, 3/50, 0.06 RP11-48L13, 10/50, 0.2

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S171, 5/40, 13% Our unpublished data D9S169, 23/27, 85% Our unpublished data D9S1853, 11/36, 31% D9S171, 11/14, 79% PMID=10987304 D9S161, 12/16, 75%

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