IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.12,p=0.210771348 ZBTB5,FC=0.02,p=0.901330693 FRMPD1,FC=-0.37,p=0.0220011 SHB,FC=-0.52,p=0.004707818 ALDH1B1,FC=0.58,p=0.004804781

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.04,p=0.750833214 ZBTB5,FC=0.50,p=0.006147173 FRMPD1,FC=-0.48,p=0.024671806 SHB,FC=-0.59,p=0.002587733 ALDH1B1,FC=0.54,p=0.054823042


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.14,p=0.022327951 GRHPR,FC=-0.03,p=0.597600675 GRHPR,FC=-0.05,p=0.430325207 ZBTB5,FC=-0.13,p=0.001577358 POLR1E,FC=0.16,p=0.005817135 FRMPD1,FC=-0.52,p=1.87e-05 DCAF10,FC=-0.12,p=0.10442044 SHB,FC=-0.04,p=0.519130547 SHB,FC=-0.03,p=0.745493879 ALDH1B1,FC=0.43,p=4.47e-05 ALDH1B1,FC=0.36,p=3.92e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=2.37,p=4.77e-76 GRHPR,FC=-3.31,p=4.58e-89 GRHPR,FC=-2.30,p=1.11e-77 ZBTB5,FC=0.31,p=2.87e-07 POLR1E,FC=0.83,p=2.36e-19 FRMPD1,FC=0.03,p=0.812457272 DCAF10,FC=1.96,p=9.99e-75 SHB,FC=0.53,p=4.04e-14 SHB,FC=1.71,p=7.29e-46 ALDH1B1,FC=4.69,p=7.7e-79 ALDH1B1,FC=2.23,p=8.44e-93


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.02,p=0.741364085 GRHPR,FC=0.06,p=0.311322077 GRHPR,FC=0.03,p=0.653230888 ZBTB5,FC=0.12,p=0.034489424 POLR1E,FC=-0.06,p=0.485146283 FBXO10,FC=-0.10,p=0.39389511 FBXO10,FC=0.25,p=0.213989033 FBXO10,FC=0.08,p=0.595453133 TOMM5,FC=0.42,p=2.19e-06 TOMM5,FC=0.20,p=0.060841866 FRMPD1,FC=0.22,p=0.231495567 RG9MTD3,FC=-0.52,p=0.000192586 RG9MTD3,FC=0.33,p=0.014169775 EXOSC3,FC=-0.19,p=0.114233834 EXOSC3,FC=0.36,p=0.000274901 EXOSC3,FC=0.07,p=0.738448456 EXOSC3,FC=-0.41,p=0.043264197 DCAF10,FC=-0.03,p=0.76645047 DCAF10,FC=-0.11,p=0.18445748 DCAF10,FC=0.43,p=1.38e-07 DCAF10,FC=-0.61,p=1.18e-10 SHB,FC=-0.22,p=0.03031454 SHB,FC=0.07,p=0.546642898 SHB,FC=-0.22,p=0.029199895 SHB,FC=-0.30,p=0.074036868 ALDH1B1,FC=0.77,p=3.2e-07 ALDH1B1,FC=0.48,p=2.05e-05 LOC400931,FC=-0.19,p=0.244377256

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.11,p=0.175826726 GRHPR,FC=-0.01,p=0.846635225 GRHPR,FC=-0.03,p=0.670396576 ZBTB5,FC=0.50,p=4.89e-08 POLR1E,FC=0.18,p=0.049453756 FBXO10,FC=-0.07,p=0.651678987 FBXO10,FC=0.47,p=0.031361554 FBXO10,FC=0.22,p=0.221246173 TOMM5,FC=0.58,p=8.18e-08 TOMM5,FC=0.43,p=0.000196499 FRMPD1,FC=0.39,p=0.057678971 RG9MTD3,FC=-0.61,p=8.05e-05 RG9MTD3,FC=0.29,p=0.033602575 EXOSC3,FC=-0.30,p=0.037471116 EXOSC3,FC=0.57,p=4.5e-06 EXOSC3,FC=0.02,p=0.92927458 EXOSC3,FC=-0.24,p=0.266578009 DCAF10,FC=-0.07,p=0.502693623 DCAF10,FC=-0.34,p=0.001754385 DCAF10,FC=0.62,p=4.55e-11 DCAF10,FC=-0.58,p=1.7e-07 SHB,FC=-0.38,p=0.001061014 SHB,FC=0.26,p=0.058025597 SHB,FC=-0.32,p=0.016832778 SHB,FC=-0.61,p=0.002977149 ALDH1B1,FC=1.15,p=1.06e-12 ALDH1B1,FC=0.53,p=0.000188183 LOC400931,FC=-0.03,p=0.84731334


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=0.52,p=0.11187075 SHB,FC=0.15,p=0.584420043 SHB,FC=0.83,p=0.009981059 ALDH1B1,FC=1.13,p=0.000994268

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=0.32,p=0.242944953 SHB,FC=0.11,p=0.801451772 SHB,FC=0.53,p=0.118710464 ALDH1B1,FC=1.12,p=0.005012371


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.05,p=0.201044711 ZBTB5,FC=-0.03,p=0.528890503 FBXO10,FC=0.03,p=0.552257898 FBXO10,FC=0.39,p=4.16e-05 FRMPD1,FC=0.06,p=0.105240371 RG9MTD3,FC=0.10,p=0.004481899 EXOSC3,FC=0.23,p=0.001679541 SHB,FC=0.07,p=0.270516207 SHB,FC=-0.07,p=0.453545521 ALDH1B1,FC=0.07,p=0.023586013

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GRHPR,FC=-0.06,p=0.062188693 ZBTB5,FC=0.02,p=0.793538744 FBXO10,FC=0.09,p=0.211559528 FBXO10,FC=0.56,p=1.71e-08 FRMPD1,FC=0.07,p=0.075774268 RG9MTD3,FC=0.08,p=0.002592606 EXOSC3,FC=0.41,p=1.69e-07 SHB,FC=0.07,p=0.172025182 SHB,FC=-0.18,p=0.035640384 ALDH1B1,FC=0.08,p=0.012549935


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

GRHPR,FC=-0.32,p=1.25e-07 GRHPR,FC=-0.19,p=0.001115678 GRHPR,FC=-0.25,p=1.65e-05 ZBTB5,FC=-0.33,p=4.24e-11 POLR1E,FC=-0.02,p=0.767986923 FRMPD1,FC=-0.98,p=4.81e-10 DCAF10,FC=-0.18,p=0.05073646 SHB,FC=-0.27,p=5.85e-06 SHB,FC=-0.10,p=0.394643833 ALDH1B1,FC=0.56,p=3.7e-05 ALDH1B1,FC=0.22,p=0.003580907

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

, 0/50, 0 , 50/50, 1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12599234

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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