IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SHB,FC=-0.52,p=0.004707818 ALDH1B1,FC=0.58,p=0.004804781

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SHB,FC=-0.59,p=0.002587733 ALDH1B1,FC=0.54,p=0.054823042


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DCAF10,FC=-0.12,p=0.10442044 SHB,FC=-0.03,p=0.745493879 SHB,FC=-0.04,p=0.519130547 ALDH1B1,FC=0.36,p=3.92e-07 ALDH1B1,FC=0.43,p=4.47e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DCAF10,FC=1.96,p=9.99e-75 SHB,FC=1.71,p=7.29e-46 SHB,FC=0.53,p=4.04e-14 ALDH1B1,FC=2.23,p=8.44e-93 ALDH1B1,FC=4.69,p=7.7e-79


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DCAF10,FC=-0.61,p=1.18e-10 DCAF10,FC=-0.03,p=0.76645047 DCAF10,FC=-0.11,p=0.18445748 DCAF10,FC=0.43,p=1.38e-07 SHB,FC=-0.22,p=0.03031454 SHB,FC=0.07,p=0.546642898 SHB,FC=-0.22,p=0.029199895 SHB,FC=-0.30,p=0.074036868 ALDH1B1,FC=0.77,p=3.2e-07 ALDH1B1,FC=0.48,p=2.05e-05 LOC400931,FC=-0.19,p=0.244377256

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DCAF10,FC=-0.58,p=1.7e-07 DCAF10,FC=-0.07,p=0.502693623 DCAF10,FC=-0.34,p=0.001754385 DCAF10,FC=0.62,p=4.55e-11 SHB,FC=-0.38,p=0.001061014 SHB,FC=0.26,p=0.058025597 SHB,FC=-0.32,p=0.016832778 SHB,FC=-0.61,p=0.002977149 ALDH1B1,FC=1.15,p=1.06e-12 ALDH1B1,FC=0.53,p=0.000188183 LOC400931,FC=-0.03,p=0.84731334


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SHB,FC=0.15,p=0.584420043 SHB,FC=0.83,p=0.009981059 ALDH1B1,FC=1.13,p=0.000994268

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SHB,FC=0.11,p=0.801451772 SHB,FC=0.53,p=0.118710464 ALDH1B1,FC=1.12,p=0.005012371


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SHB,FC=-0.07,p=0.453545521 SHB,FC=0.07,p=0.270516207 ALDH1B1,FC=0.07,p=0.023586013

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SHB,FC=-0.18,p=0.035640384 SHB,FC=0.07,p=0.172025182 ALDH1B1,FC=0.08,p=0.012549935


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

DCAF10,FC=-0.18,p=0.05073646 SHB,FC=-0.10,p=0.394643833 SHB,FC=-0.27,p=5.85e-06 ALDH1B1,FC=0.22,p=0.003580907 ALDH1B1,FC=0.56,p=3.7e-05

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

, 0/50, 0 , 50/50, 1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12599234

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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