IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-0.99,p=8.34e-09 APBA1,FC=-0.23,p=0.253294527

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-0.77,p=3.21e-05 APBA1,FC=0.01,p=0.979204604


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-0.88,p=3.73e-23 FAM189A2,FC=-1.61,p=9.79e-84 APBA1,FC=-0.30,p=0.015616533

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=1.65,p=2.1e-77 FAM189A2,FC=-1.20,p=5.69e-28 APBA1,FC=2.55,p=1.94e-73


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-1.07,p=2.39e-20 TJP2,FC=-1.39,p=8.22e-13 TJP2,FC=-0.24,p=0.210667371 FAM189A2,FC=-2.19,p=1.99e-40 APBA1,FC=0.32,p=0.029289613

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-1.32,p=1.08e-18 TJP2,FC=-1.68,p=9.9e-13 TJP2,FC=-0.36,p=0.098748737 FAM189A2,FC=-2.48,p=4.85e-41 APBA1,FC=0.38,p=0.033229472


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=0.12,p=0.720254021 APBA1,FC=0.62,p=0.193850307

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=0.02,p=0.956311059 APBA1,FC=0.72,p=0.055702218


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-0.09,p=0.07764363 APBA1,FC=-0.01,p=0.545378794 APBA1,FC=0.06,p=0.111390225

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TJP2,FC=-0.07,p=0.294976317 APBA1,FC=-0.02,p=0.269562381 APBA1,FC=0.07,p=0.057018828


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

TJP2,FC=-0.74,p=3.26e-17 FAM189A2,FC=-1.78,p=1.63e-52 APBA1,FC=-0.01,p=0.961981079

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-109D9, 2/50, 0.04 RP11-109D9, 3/50, 0.06

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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