IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , RASEF, 0.53%, 1/188 NTRK2, 2.97%, 6/202 SHC3, 0.53%, 1/189 SYK, 0.50%, 1/202 ROR2, 2.48%, 5/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      HNRNPK,FC=0.21,p=0.004636314 NTRK2,FC=0.14,p=0.317982349 NTRK2,FC=-2.05,p=7.48e-12 NTRK2,FC=-1.80,p=5.61e-10 NTRK2,FC=-0.14,p=0.273657305 NTRK2,FC=-1.46,p=1.31e-07 AGTPBP1,FC=-1.01,p=2.95e-06 ISCA1,FC=-0.39,p=0.000203717 GAS1,FC=-0.75,p=5.93e-06 GAS1,FC=-0.93,p=3.32e-07 DAPK1,FC=-0.90,p=4.6e-13 CTSL1,FC=-0.24,p=0.071163763 CCRK,FC=0.46,p=0.011572193 SHC3,FC=-0.52,p=0.00081287 CKS2,FC=0.65,p=0.003654831 SEMA4D,FC=0.44,p=0.000697935 GADD45G,FC=0.02,p=0.924409858 SYK,FC=0.09,p=0.382783243 SYK,FC=0.04,p=0.702129319 SYK,FC=0.01,p=0.939506172 AUH,FC=-0.15,p=0.074130661 NFIL3,FC=-0.82,p=3.9e-09 ROR2,FC=0.59,p=0.000709351 SPTLC1,FC=-0.33,p=0.000519786 IARS,FC=0.46,p=2.86e-07 OMD,FC=-0.21,p=0.286786811 ECM2,FC=-0.83,p=7.4e-09 ECM2,FC=-1.37,p=6.31e-18 BICD2,FC=-0.68,p=5.61e-17 NINJ1,FC=-0.51,p=0.032995152 FAM120A,FC=0.21,p=0.005480301 PHF2,FC=-0.74,p=9.77e-13 ZNF169,FC=0.15,p=0.293847316 FBP2,FC=0.01,p=0.945454005 FBP1,FC=-1.65,p=7.86e-18 C9orf3,FC=-0.20,p=0.1275531

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      HNRNPK,FC=0.38,p=0.000120628 NTRK2,FC=0.36,p=0.015357922 NTRK2,FC=1.53,p=0.002162694 NTRK2,FC=0.54,p=0.22478618 NTRK2,FC=0.15,p=0.464233843 NTRK2,FC=0.53,p=0.296334413 AGTPBP1,FC=-0.92,p=0.000863785 ISCA1,FC=-0.24,p=0.074678743 GAS1,FC=-0.41,p=0.041445077 GAS1,FC=-0.59,p=0.005163219 DAPK1,FC=-1.58,p=4.86e-20 CTSL1,FC=-1.06,p=3.34e-08 CCRK,FC=0.25,p=0.28698833 SHC3,FC=-1.15,p=7.51e-07 CKS2,FC=1.57,p=3.12e-09 SEMA4D,FC=0.38,p=0.021473644 GADD45G,FC=-1.21,p=4.76e-06 SYK,FC=0.23,p=0.124924114 SYK,FC=0.63,p=4.3e-05 SYK,FC=0.32,p=0.057291173 AUH,FC=-0.11,p=0.12808348 NFIL3,FC=-0.54,p=0.008094737 ROR2,FC=0.78,p=0.00192539 SPTLC1,FC=-0.21,p=0.094841666 IARS,FC=0.73,p=4.94e-09 OMD,FC=-0.16,p=0.555787907 ECM2,FC=-0.88,p=2.38e-05 ECM2,FC=-1.70,p=1.59e-13 BICD2,FC=0.62,p=6.24e-05 NINJ1,FC=-1.10,p=0.000611814 FAM120A,FC=0.22,p=0.044691455 PHF2,FC=-0.52,p=0.000177501 ZNF169,FC=-0.36,p=0.036216766 FBP2,FC=0.17,p=0.507969879 FBP1,FC=-2.85,p=6.22e-19 C9orf3,FC=0.53,p=0.002294552


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      HNRNPK,FC=0.02,p=0.575628999 RMI1,FC=0.56,p=1.26e-15 SLC28A3,FC=0.03,p=0.577446366 NTRK2,FC=-1.31,p=1.63e-23 NTRK2,FC=-0.53,p=1.09e-16 NTRK2,FC=-2.23,p=2.44e-33 NTRK2,FC=-2.36,p=4.52e-38 AGTPBP1,FC=-0.97,p=9.59e-37 MAK10,FC=0.23,p=6.07e-06 MAK10,FC=0.55,p=1.22e-11 GOLM1,FC=3.23,p=2.57e-100 ISCA1,FC=-0.10,p=0.04782189 ISCA1,FC=-0.32,p=2.71e-06 ZCCHC6,FC=-0.28,p=1.49e-05 GAS1,FC=-0.40,p=0.00351133 GAS1,FC=-1.30,p=6.94e-11 DAPK1,FC=-0.77,p=3.59e-19 DAPK1,FC=0.23,p=0.058427885 CTSL1,FC=0.06,p=0.514547476 PTEN,FC=0.24,p=0.000239149 CCRK,FC=0.28,p=4.73e-08 SPIN1,FC=-0.09,p=0.273228395 SHC3,FC=-0.89,p=4.74e-11 CKS2,FC=1.29,p=5.39e-30 SECISBP2,FC=-0.25,p=8.43e-06 SEMA4D,FC=0.19,p=0.007775794 GADD45G,FC=-0.02,p=0.817424418 DIRAS2,FC=-0.11,p=0.51727347 SYK,FC=0.10,p=0.449514793 AUH,FC=-0.17,p=0.00827263 NFIL3,FC=-0.63,p=1.31e-14 ROR2,FC=-0.01,p=0.95160496 SPTLC1,FC=-0.08,p=0.148515199 SPTLC1,FC=0.82,p=1.41e-13 IARS,FC=0.51,p=4.26e-16 NOL8,FC=0.11,p=0.445782894 OGN,FC=-2.61,p=6.03e-29 OMD,FC=-0.91,p=1.2e-07 OMD,FC=-0.73,p=2.75e-09 ASPN,FC=-0.08,p=0.553900808 ECM2,FC=-1.18,p=1.21e-45 IPPK,FC=0.30,p=3.82e-06 BICD2,FC=-0.64,p=1.59e-28 BICD2,FC=-0.35,p=0.000221859 BICD2,FC=-0.52,p=5.27e-07 ZNF484,FC=-0.04,p=0.662522497 NINJ1,FC=-0.07,p=0.337412787 FAM120A,FC=0.59,p=2.13e-26 FAM120A,FC=0.63,p=4.38e-20 FAM120A,FC=-0.12,p=0.327800115 PHF2,FC=-0.72,p=1.13e-35 BARX1,FC=0.65,p=0.001395298 FBP2,FC=-0.07,p=0.211202044 FBP1,FC=-1.24,p=3.54e-24 C9orf3,FC=-0.25,p=0.00083048

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      HNRNPK,FC=-2.27,p=7.3e-119 RMI1,FC=1.09,p=4.24e-33 SLC28A3,FC=0.23,p=0.003511701 NTRK2,FC=1.28,p=6.75e-23 NTRK2,FC=-3.93,p=2.53e-83 NTRK2,FC=4.30,p=1.36e-98 NTRK2,FC=-2.14,p=2.34e-33 AGTPBP1,FC=-1.30,p=7.76e-30 MAK10,FC=-0.01,p=0.920199675 MAK10,FC=-4.86,p=4.48e-131 GOLM1,FC=-4.47,p=2.61e-68 ISCA1,FC=0.39,p=6.4e-10 ISCA1,FC=-3.17,p=9.02e-106 ZCCHC6,FC=-4.94,p=8.32e-58 GAS1,FC=4.69,p=9.09e-104 GAS1,FC=1.50,p=1.33e-20 DAPK1,FC=-0.66,p=3.23e-21 DAPK1,FC=3.23,p=8.29e-87 CTSL1,FC=-0.35,p=9.62e-08 PTEN,FC=-4.41,p=5.85e-82 CCRK,FC=0.40,p=9.5e-05 SPIN1,FC=-3.72,p=2.59e-93 SHC3,FC=0.75,p=2.12e-08 CKS2,FC=1.20,p=1.69e-37 SECISBP2,FC=2.26,p=7.05e-95 SEMA4D,FC=-2.36,p=8.86e-29 GADD45G,FC=0.27,p=0.000712613 DIRAS2,FC=3.96,p=4.65e-88 SYK,FC=-2.75,p=1.11e-51 AUH,FC=-1.24,p=1.68e-41 NFIL3,FC=-3.75,p=4.81e-82 ROR2,FC=0.78,p=2.24e-06 SPTLC1,FC=0.48,p=6.02e-12 SPTLC1,FC=2.17,p=4.45e-46 IARS,FC=-1.93,p=1.25e-47 NOL8,FC=-1.99,p=5.87e-64 OGN,FC=2.50,p=3.33e-40 OMD,FC=-1.56,p=1.05e-17 OMD,FC=1.73,p=4.31e-63 ASPN,FC=-1.01,p=4.82e-17 ECM2,FC=-2.65,p=3.85e-61 IPPK,FC=0.41,p=3.58e-08 BICD2,FC=-0.66,p=1.64e-18 BICD2,FC=3.32,p=4.68e-83 BICD2,FC=-0.25,p=0.002721821 ZNF484,FC=-0.43,p=9.67e-05 NINJ1,FC=1.61,p=7.36e-55 FAM120A,FC=-1.51,p=9.41e-66 FAM120A,FC=-0.53,p=1.17e-10 FAM120A,FC=0.75,p=3.57e-05 PHF2,FC=3.58,p=5.5e-96 BARX1,FC=2.23,p=4.55e-41 FBP2,FC=2.03,p=5.95e-49 FBP1,FC=-1.91,p=3.21e-57 C9orf3,FC=-3.74,p=2.76e-132


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RASEF,FC=0.82,p=2.44e-05 RASEF,FC=0.98,p=5.75e-07 RASEF,FC=-0.10,p=0.437093733 FRMD3,FC=-1.73,p=5.3e-41 FRMD3,FC=-1.27,p=4.35e-12 C9orf103,FC=-0.64,p=7.4e-07 UBQLN1,FC=0.52,p=2.97e-08 UBQLN1,FC=0.20,p=0.004162686 UBQLN1,FC=-0.29,p=1.43e-07 GKAP1,FC=-0.19,p=0.079517569 GKAP1,FC=-0.43,p=9.07e-05 KIF27,FC=-0.12,p=0.561488222 C9orf64,FC=0.16,p=0.098101331 C9orf64,FC=-0.30,p=0.018053206 HNRNPK,FC=-0.21,p=4.62e-05 RMI1,FC=0.60,p=4.22e-11 SLC28A3,FC=0.47,p=0.001212413 NTRK2,FC=-2.56,p=4.09e-20 NTRK2,FC=-2.57,p=1.34e-26 NTRK2,FC=0.16,p=0.214469586 NTRK2,FC=-0.43,p=0.015843898 NTRK2,FC=-0.99,p=2.23e-07 AGTPBP1,FC=-1.23,p=9e-42 AGTPBP1,FC=-0.38,p=0.023581422 MAK10,FC=0.12,p=0.140941726 MAK10,FC=0.10,p=0.348460854 GOLM1,FC=2.06,p=3.27e-36 ISCA1,FC=0.08,p=0.325771183 ISCA1,FC=-0.28,p=9.58e-05 ZCCHC6,FC=-0.28,p=2.33e-05 ZCCHC6,FC=-0.30,p=0.002133043 ZCCHC6,FC=-0.34,p=0.082586768 ZCCHC6,FC=0.00,p=0.953167267 ZCCHC6,FC=-0.45,p=3.48e-08 GAS1,FC=-0.84,p=1.12e-05 GAS1,FC=-0.04,p=0.810636408 DAPK1,FC=-0.34,p=0.095957599 DAPK1,FC=-1.20,p=9.23e-22 CTSL1,FC=-0.46,p=3.88e-05 PTEN,FC=-0.07,p=0.369309823 C9orf79,FC=0.02,p=0.870961077 C9orf79,FC=-0.08,p=0.505539966 CCRK,FC=0.08,p=0.375370261 SPIN1,FC=0.35,p=0.147773113 SPIN1,FC=-0.41,p=6.03e-12 SPIN1,FC=0.12,p=0.253841593 NXNL2,FC=-0.03,p=0.831761835 LOC286238,FC=0.24,p=0.130595801 S1PR3,FC=-0.44,p=4.38e-05 S1PR3,FC=0.83,p=1.42e-05 SHC3,FC=-1.68,p=4.68e-14 CKS2,FC=1.06,p=9.22e-15 SECISBP2,FC=-0.27,p=0.001066018 SECISBP2,FC=-0.33,p=2.99e-08 SEMA4D,FC=0.16,p=0.12420538 SEMA4D,FC=-0.03,p=0.870331475 SEMA4D,FC=0.07,p=0.521537432 GADD45G,FC=-0.09,p=0.472532482 DIRAS2,FC=0.11,p=0.634140874 DIRAS2,FC=0.22,p=0.398992213 SYK,FC=-0.26,p=0.010167486 SYK,FC=-0.82,p=1.42e-09 AUH,FC=0.09,p=0.651163987 AUH,FC=-0.27,p=0.000347781 NFIL3,FC=-1.12,p=7.64e-24 ROR2,FC=-0.33,p=0.07022737 C5orf36,FC=-0.28,p=0.108136624 SPTLC1,FC=-0.31,p=0.024894509 SPTLC1,FC=-0.04,p=0.452125355 SPTLC1,FC=-0.24,p=0.296630496 IARS,FC=0.31,p=8.63e-07 IARS,FC=0.30,p=0.17165815 IARS,FC=-0.14,p=0.115016283 NOL8,FC=-0.31,p=0.000465554 CENPP,FC=0.19,p=0.069148627 OGN,FC=-3.20,p=7.03e-25 OGN,FC=-3.27,p=3.76e-31 OMD,FC=-0.99,p=2.96e-07 OMD,FC=-1.09,p=1.86e-07 ASPN,FC=0.22,p=0.431925137 ASPN,FC=0.11,p=0.564631477 ECM2,FC=-0.72,p=1.47e-05 ECM2,FC=-1.39,p=2.3e-24 IPPK,FC=-0.14,p=0.366673555 IPPK,FC=-0.17,p=0.040072475 BICD2,FC=-0.49,p=3.96e-09 BICD2,FC=-0.93,p=1.15e-06 BICD2,FC=-0.71,p=0.000404203 BICD2,FC=-0.55,p=7.91e-15 ANKRD19,FC=-0.21,p=0.305776515 ZNF484,FC=0.60,p=4.6e-05 FGD3,FC=-0.16,p=0.262938938 FGD3,FC=-1.11,p=4.01e-25 TMEM67,FC=-0.33,p=0.133587118 SUSD3,FC=-0.09,p=0.544736002 C9orf89,FC=-0.08,p=0.535556701 C9orf89,FC=-0.03,p=0.718193615 NINJ1,FC=-0.12,p=0.120880814 WNK2,FC=0.47,p=0.020039991 WNK2,FC=0.31,p=0.049172622 WNK2,FC=0.65,p=1.35e-05 WNK2,FC=0.48,p=0.002104707 WNK2,FC=0.08,p=0.665375584 WNK2,FC=0.51,p=0.000221725 FAM120AOS,FC=0.19,p=0.282625961 FAM120AOS,FC=0.12,p=0.036488085 FAM120A,FC=0.27,p=8.81e-05 FAM120A,FC=0.61,p=5.04e-05 FAM120A,FC=0.82,p=2.54e-07 FAM120A,FC=0.61,p=6.44e-07 FAM120A,FC=0.43,p=2.72e-05 FAM120A,FC=0.55,p=3.23e-07 FAM120A,FC=0.25,p=0.185071357 FAM120A,FC=-0.27,p=0.161933316 PHF2,FC=-0.32,p=4.01e-05 BARX1,FC=1.72,p=4.36e-11 PTPDC1,FC=-0.34,p=0.000312197 PTPDC1,FC=-0.82,p=1.27e-06 ZNF169,FC=0.65,p=0.000124796 ZNF169,FC=0.44,p=2.14e-06 ZNF169,FC=0.55,p=0.002117441 HIATL1,FC=-0.08,p=0.701295921 HIATL1,FC=0.02,p=0.741134843 FBP2,FC=-0.44,p=0.001405822 FBP1,FC=-1.51,p=4.11e-22 C9orf3,FC=0.44,p=0.004988547 C9orf3,FC=-0.06,p=0.554378474 C9orf3,FC=0.39,p=0.022638468 C9orf3,FC=-0.30,p=0.001682685 C9orf3,FC=0.12,p=0.454185039

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RASEF,FC=1.94,p=4.28e-24 RASEF,FC=2.32,p=6.73e-27 RASEF,FC=-1.14,p=2.27e-10 FRMD3,FC=-2.44,p=2.7e-34 FRMD3,FC=-1.76,p=1.74e-18 C9orf103,FC=-1.78,p=1.29e-15 UBQLN1,FC=1.01,p=1.31e-21 UBQLN1,FC=0.49,p=2.44e-08 UBQLN1,FC=-0.23,p=0.003054404 GKAP1,FC=-0.79,p=7.89e-12 GKAP1,FC=-1.20,p=4.21e-16 KIF27,FC=-0.00,p=0.992903665 C9orf64,FC=-0.47,p=0.000182298 C9orf64,FC=-0.69,p=3.23e-07 HNRNPK,FC=-0.31,p=1.86e-06 RMI1,FC=0.86,p=2.9e-12 SLC28A3,FC=0.96,p=4.19e-13 NTRK2,FC=2.38,p=8.25e-10 NTRK2,FC=1.82,p=4.44e-07 NTRK2,FC=1.09,p=1.73e-13 NTRK2,FC=1.36,p=1.16e-06 NTRK2,FC=2.70,p=1.38e-11 AGTPBP1,FC=-1.35,p=1.73e-26 AGTPBP1,FC=-0.34,p=0.07120959 MAK10,FC=0.25,p=0.004125535 MAK10,FC=0.03,p=0.803067941 GOLM1,FC=0.17,p=0.418386064 ISCA1,FC=0.38,p=0.000247577 ISCA1,FC=-0.31,p=0.002057025 ZCCHC6,FC=-0.34,p=0.000314385 ZCCHC6,FC=0.11,p=0.253979389 ZCCHC6,FC=-0.53,p=0.009556829 ZCCHC6,FC=0.06,p=0.43346518 ZCCHC6,FC=-0.17,p=0.067432315 GAS1,FC=-0.54,p=0.013581699 GAS1,FC=-0.04,p=0.831264723 DAPK1,FC=-0.77,p=0.000264103 DAPK1,FC=-1.87,p=6.64e-31 CTSL1,FC=-1.18,p=6.99e-14 PTEN,FC=-0.58,p=2.62e-06 C9orf79,FC=0.28,p=0.098426513 C9orf79,FC=-0.08,p=0.488610059 CCRK,FC=-0.25,p=0.041021185 SPIN1,FC=-0.47,p=0.072353473 SPIN1,FC=-0.22,p=0.003861099 SPIN1,FC=0.12,p=0.281776517 NXNL2,FC=-0.16,p=0.383086596 LOC286238,FC=0.57,p=0.002538186 S1PR3,FC=-0.27,p=0.015616737 S1PR3,FC=0.11,p=0.614840956 SHC3,FC=-2.41,p=1.28e-22 CKS2,FC=1.49,p=4.58e-21 SECISBP2,FC=-0.50,p=8.51e-09 SECISBP2,FC=-0.56,p=3.96e-14 SEMA4D,FC=0.55,p=2.57e-06 SEMA4D,FC=-0.17,p=0.43782298 SEMA4D,FC=0.04,p=0.733842997 GADD45G,FC=-0.94,p=5.15e-07 DIRAS2,FC=1.68,p=7.35e-10 DIRAS2,FC=1.68,p=1.82e-06 SYK,FC=-0.06,p=0.597833411 SYK,FC=-0.93,p=2.42e-09 AUH,FC=-0.10,p=0.684647313 AUH,FC=-0.70,p=6.01e-13 NFIL3,FC=-0.80,p=1.44e-09 ROR2,FC=0.36,p=0.081845778 C5orf36,FC=-0.13,p=0.483614147 SPTLC1,FC=-0.45,p=0.005592992 SPTLC1,FC=-0.02,p=0.765483693 SPTLC1,FC=-0.59,p=0.024524652 IARS,FC=0.32,p=0.000327118 IARS,FC=0.46,p=0.063367581 IARS,FC=0.23,p=0.017281299 NOL8,FC=-0.22,p=0.06251611 CENPP,FC=0.88,p=2.58e-14 OGN,FC=-4.27,p=2.22e-30 OGN,FC=-4.13,p=2.49e-32 OMD,FC=-1.02,p=1.26e-06 OMD,FC=-0.97,p=1.03e-05 ASPN,FC=-0.21,p=0.508821372 ASPN,FC=-0.13,p=0.582653417 ECM2,FC=-1.32,p=2.13e-12 ECM2,FC=-1.74,p=6.68e-22 IPPK,FC=0.42,p=0.013854205 IPPK,FC=0.78,p=3.89e-12 BICD2,FC=1.08,p=1.58e-13 BICD2,FC=0.73,p=0.000210812 BICD2,FC=0.35,p=0.163796733 BICD2,FC=0.94,p=1.99e-12 ANKRD19,FC=-0.35,p=0.110682583 ZNF484,FC=0.54,p=0.002626614 FGD3,FC=0.30,p=0.010115657 FGD3,FC=-1.56,p=3.16e-24 TMEM67,FC=-0.37,p=0.137711624 SUSD3,FC=-0.98,p=3.51e-06 C9orf89,FC=-0.14,p=0.345386372 C9orf89,FC=0.01,p=0.894236426 NINJ1,FC=-0.33,p=0.00740055 WNK2,FC=1.51,p=1.13e-11 WNK2,FC=1.02,p=2.55e-08 WNK2,FC=1.54,p=1.25e-19 WNK2,FC=0.95,p=6.97e-08 WNK2,FC=1.02,p=3.8e-07 WNK2,FC=1.16,p=1.91e-13 FAM120AOS,FC=0.36,p=0.086489024 FAM120AOS,FC=0.21,p=0.006821743 FAM120A,FC=0.17,p=0.014641878 FAM120A,FC=1.04,p=3.75e-09 FAM120A,FC=1.18,p=3.9e-09 FAM120A,FC=0.61,p=4.29e-09 FAM120A,FC=0.46,p=9.07e-05 FAM120A,FC=0.87,p=6.63e-13 FAM120A,FC=0.97,p=3.82e-06 FAM120A,FC=-0.01,p=0.966464616 PHF2,FC=0.18,p=0.047371987 BARX1,FC=2.13,p=3.01e-16 PTPDC1,FC=-0.43,p=0.00026541 PTPDC1,FC=-1.67,p=6.14e-13 ZNF169,FC=0.68,p=0.000574203 ZNF169,FC=0.50,p=1.43e-05 ZNF169,FC=1.15,p=1.1e-07 HIATL1,FC=0.17,p=0.40806935 HIATL1,FC=0.48,p=1.08e-09 FBP2,FC=-0.59,p=4.24e-05 FBP1,FC=-2.88,p=7.01e-36 C9orf3,FC=0.32,p=0.001048813 C9orf3,FC=-0.02,p=0.804063294 C9orf3,FC=0.61,p=1.11e-05 C9orf3,FC=0.24,p=0.022787266 C9orf3,FC=0.31,p=0.013299268


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      UBQLN1,FC=0.79,p=0.005661614 UBQLN1,FC=-0.09,p=0.780327293 NTRK2,FC=-1.94,p=0.001709557 GAS1,FC=0.05,p=0.910715006 GAS1,FC=-0.43,p=0.422206511 DAPK1,FC=-0.70,p=0.177905167 CCRK,FC=0.29,p=0.253334821 SHC3,FC=-0.96,p=0.019565403 CKS2,FC=0.65,p=0.045983652 CKS2,FC=0.97,p=0.011290059 SEMA4D,FC=0.72,p=0.004435794 GADD45G,FC=-0.73,p=0.056414737 SYK,FC=-0.23,p=0.409232999 SYK,FC=-0.76,p=0.068230163 SYK,FC=-0.76,p=0.068230163 AUH,FC=-0.11,p=0.669869337 NFIL3,FC=-0.58,p=0.07909667 ROR2,FC=-0.82,p=0.067574236 SPTLC1,FC=-0.37,p=0.177419926 SPTLC1,FC=0.37,p=0.195940665 IARS,FC=0.85,p=0.014609515 OGN,FC=-1.31,p=0.001818811 OGN,FC=-1.14,p=0.01245469 OMD,FC=-1.58,p=0.000515337 ASPN,FC=0.13,p=0.768936505 ECM2,FC=-1.08,p=0.033392391 NINJ1,FC=0.02,p=0.939901345 FBP2,FC=-0.75,p=0.03760077 FBP1,FC=-2.04,p=2.83e-05 C9orf3,FC=0.74,p=0.040109363

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      UBQLN1,FC=1.14,p=0.000292078 UBQLN1,FC=0.09,p=0.719737304 NTRK2,FC=1.90,p=0.015915458 GAS1,FC=0.47,p=0.28411225 GAS1,FC=0.03,p=0.955390359 DAPK1,FC=-1.64,p=0.000697298 CCRK,FC=0.08,p=0.788956595 SHC3,FC=-1.04,p=0.022643169 CKS2,FC=1.47,p=0.000218947 CKS2,FC=1.73,p=0.000213051 SEMA4D,FC=0.45,p=0.158701948 GADD45G,FC=-0.38,p=0.555969316 SYK,FC=-0.49,p=0.15983871 SYK,FC=0.06,p=0.934784582 SYK,FC=0.06,p=0.934784582 AUH,FC=-0.11,p=0.747942869 NFIL3,FC=-0.59,p=0.091132951 ROR2,FC=-0.32,p=0.351413742 SPTLC1,FC=-0.18,p=0.664646942 SPTLC1,FC=0.28,p=0.19891082 IARS,FC=1.05,p=0.002782472 OGN,FC=-1.11,p=0.003660331 OGN,FC=-1.57,p=0.000587675 OMD,FC=-0.72,p=0.108539255 ASPN,FC=0.17,p=0.745028394 ECM2,FC=-1.10,p=0.026896538 NINJ1,FC=-0.25,p=0.510223641 FBP2,FC=-0.45,p=0.382607362 FBP1,FC=-3.72,p=3.3e-06 C9orf3,FC=1.07,p=0.003667448


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RASEF,FC=0.09,p=0.255209706 C9orf103,FC=-0.09,p=0.07401717 UBQLN1,FC=0.23,p=8.13e-07 KIF27,FC=-0.02,p=0.700861062 KIF27,FC=0.04,p=0.015577383 C9orf64,FC=0.07,p=0.142583349 SLC28A3,FC=0.04,p=0.184906479 NTRK2,FC=-0.08,p=0.091552861 MAK10,FC=0.01,p=0.789361425 ZCCHC6,FC=-0.01,p=0.767596831 GAS1,FC=-0.16,p=0.005656682 DAPK1,FC=-0.15,p=0.003420004 CCRK,FC=-0.13,p=0.20982548 SHC3,FC=-0.11,p=0.050853603 CKS2,FC=0.47,p=4.44e-06 SECISBP2,FC=-0.06,p=0.365507003 SEMA4D,FC=0.03,p=0.164712239 GADD45G,FC=-0.14,p=0.0266348 DIRAS2,FC=0.17,p=0.008341648 DIRAS2,FC=0.03,p=0.350865452 DIRAS2,FC=0.09,p=0.101063191 SYK,FC=-0.09,p=0.006844282 AUH,FC=-0.00,p=0.991644095 AUH,FC=0.07,p=0.36787386 NFIL3,FC=-0.47,p=3.31e-08 ROR2,FC=-0.01,p=0.8455559 SPTLC1,FC=-0.09,p=0.138677937 IARS,FC=0.05,p=0.316230323 IARS,FC=0.07,p=0.174389146 NOL8,FC=0.31,p=7.07e-07 OGN,FC=-0.39,p=1.42e-14 OMD,FC=-0.48,p=0.000164914 ASPN,FC=-0.40,p=0.022864337 ECM2,FC=0.20,p=0.114383276 BICD2,FC=0.00,p=0.998818719 FGD3,FC=-0.15,p=5.61e-05 SUSD3,FC=-0.27,p=0.193175561 C9orf89,FC=-0.04,p=0.383370388 NINJ1,FC=-0.21,p=0.00292647 BARX1,FC=-0.12,p=0.17095742 PTPDC1,FC=-0.06,p=0.079175071 FBP2,FC=-0.27,p=0.00125387 FBP1,FC=-0.41,p=0.001900725 C9orf3,FC=-0.08,p=0.152509847

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RASEF,FC=0.13,p=0.190538753 C9orf103,FC=-0.16,p=0.000836428 UBQLN1,FC=0.29,p=6.27e-08 KIF27,FC=-0.02,p=0.672587721 KIF27,FC=0.02,p=0.287645867 C9orf64,FC=0.08,p=0.100866207 SLC28A3,FC=0.02,p=0.398470064 NTRK2,FC=0.27,p=0.038871947 MAK10,FC=0.02,p=0.622420889 ZCCHC6,FC=0.02,p=0.61030775 GAS1,FC=-0.09,p=0.178965095 DAPK1,FC=-0.26,p=3.93e-05 CCRK,FC=-0.37,p=0.00401207 SHC3,FC=-0.14,p=0.011622584 CKS2,FC=0.70,p=4.01e-08 SECISBP2,FC=-0.21,p=0.004475756 SEMA4D,FC=0.03,p=0.19333208 GADD45G,FC=-0.19,p=0.003569065 DIRAS2,FC=0.33,p=0.004001722 DIRAS2,FC=0.04,p=0.149981641 DIRAS2,FC=0.24,p=0.038941869 SYK,FC=-0.06,p=0.17901499 AUH,FC=0.07,p=0.509118021 AUH,FC=0.03,p=0.719919399 NFIL3,FC=-0.36,p=8.09e-05 ROR2,FC=0.01,p=0.694325345 SPTLC1,FC=-0.03,p=0.632473821 IARS,FC=0.15,p=0.026372097 IARS,FC=0.17,p=0.011370619 NOL8,FC=0.35,p=2.06e-05 OGN,FC=-0.44,p=4.99e-14 OMD,FC=-0.51,p=0.000213657 ASPN,FC=-0.56,p=0.001090467 ECM2,FC=0.22,p=0.131363282 BICD2,FC=0.25,p=0.10468767 FGD3,FC=-0.16,p=6.35e-05 SUSD3,FC=-0.35,p=0.078062742 C9orf89,FC=0.04,p=0.564259005 NINJ1,FC=-0.29,p=0.00017362 BARX1,FC=-0.08,p=0.26565031 PTPDC1,FC=-0.08,p=0.04197186 FBP2,FC=-0.27,p=0.001856731 FBP1,FC=-0.93,p=2.48e-07 C9orf3,FC=-0.04,p=0.570399615


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-let-7d,Mean=-1.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-let-7d,Mean=-1.72

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-let-7d,Mean=-0.22

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-let-7d,Mean=-0.34

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

HNRNPK,FC=-0.02,p=0.671413183 RMI1,FC=0.59,p=2.23e-13 SLC28A3,FC=-0.20,p=0.010400282 NTRK2,FC=-1.51,p=2.29e-20 NTRK2,FC=-0.98,p=5.08e-26 NTRK2,FC=-2.08,p=8.62e-23 NTRK2,FC=-2.06,p=3.22e-21 AGTPBP1,FC=-0.83,p=4.38e-23 MAK10,FC=0.21,p=0.000217715 MAK10,FC=0.76,p=4e-18 GOLM1,FC=3.25,p=7.18e-66 ISCA1,FC=-0.27,p=7.91e-08 ISCA1,FC=-0.25,p=0.000939547 ZCCHC6,FC=-0.32,p=2.4e-10 GAS1,FC=-0.09,p=0.640539046 GAS1,FC=-1.10,p=8.7e-08 DAPK1,FC=-0.66,p=1.89e-12 DAPK1,FC=0.92,p=5.46e-11 CTSL1,FC=-0.16,p=0.053580475 PTEN,FC=0.25,p=7.93e-06 CCRK,FC=0.18,p=0.002033795 SPIN1,FC=0.73,p=1.23e-13 SHC3,FC=-0.69,p=4.86e-05 CKS2,FC=1.16,p=1.8e-20 SECISBP2,FC=-0.13,p=0.021966051 SEMA4D,FC=0.25,p=0.001292346 GADD45G,FC=-0.04,p=0.667489126 DIRAS2,FC=-0.43,p=0.02232159 SYK,FC=0.17,p=0.196188455 AUH,FC=-0.30,p=2.32e-07 NFIL3,FC=-0.66,p=1.01e-11 ROR2,FC=0.07,p=0.651108973 SPTLC1,FC=-0.08,p=0.081262346 SPTLC1,FC=0.91,p=2.18e-13 IARS,FC=0.49,p=6.51e-14 NOL8,FC=0.19,p=0.007280526 OGN,FC=-1.62,p=1.81e-09 OMD,FC=-0.32,p=0.070922476 OMD,FC=-0.46,p=0.000152742 ASPN,FC=-0.03,p=0.856893104 ECM2,FC=-1.05,p=1.51e-25 IPPK,FC=0.14,p=0.050980368 BICD2,FC=-0.45,p=2.29e-13 BICD2,FC=-0.22,p=0.038694888 BICD2,FC=-0.53,p=1.88e-05 ZNF484,FC=-0.17,p=0.111138606 NINJ1,FC=-0.16,p=0.024627041 FAM120A,FC=0.82,p=4.72e-46 FAM120A,FC=0.93,p=3.73e-39 FAM120A,FC=-0.52,p=0.001410625 PHF2,FC=-0.67,p=8.58e-25 BARX1,FC=0.73,p=0.001369982 FBP2,FC=-0.12,p=0.048683113 FBP1,FC=-1.13,p=6.91e-16 C9orf3,FC=-0.63,p=3.98e-13

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-541F16, 3/50, 0.06 RP11-541F16, 3/50, 0.06 RP11-439A18, 1/50, 0.02 RP11-439A18, 3/50, 0.06 RP11-59M22, 3/50, 0.06 RP11-59M22, 1/50, 0.02 RP11-172F7, 3/50, 0.06 RP11-172F7, 1/50, 0.02 RP11-280P22, 4/50, 0.08 RP11-280P22, 1/50, 0.02 RP11-276H19, 2/50, 0.04 RP11-276H19, 2/50, 0.04 RP11-40C6, 1/50, 0.02 RP11-40C6, 2/50, 0.04 RP11-249H20, 2/50, 0.04 RP11-249H20, 2/50, 0.04 RP11-65B23, 3/50, 0.06 RP11-65B23, 5/50, 0.1 RP11-345K9, 11/50, 0.22 RP11-345K9, 3/50, 0.06 RP11-176L21, 1/50, 0.02 RP11-176L21, 8/50, 0.16 RP11-8B23, 8/50, 0.16 RP11-8B23, 2/50, 0.04 RP11-555F9, 0/50, 0 RP11-555F9, 5/50, 0.1 RP11-440G5, 0/50, 0 RP11-440G5, 2/50, 0.04 RP11-19J3, 8/50, 0.16 RP11-19J3, 0/50, 0 RP11-30L4, 8/50, 0.16 RP11-30L4, 3/50, 0.06 RP11-279I21, 7/50, 0.14 RP11-279I21, 0/50, 0

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D9S167, 9/19, 47% PMID=10987304 D9S283, 7/16, 44%

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