IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

XPA, down, 6/50(12%,-0.32))(Fold Change) PTCH1, 2.26%, 5/221 TGFBR1, 0.50%, 1/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-0.20,p=0.1275531 FANCC,FC=-0.29,p=0.086973785 PTCH1,FC=0.53,p=0.00064048 PTCH1,FC=-0.24,p=0.181284868 HSD17B3,FC=0.35,p=0.033594075 SLC35D2,FC=-0.22,p=0.040559976 HABP4,FC=0.25,p=0.114793907 CDC14B,FC=0.03,p=0.770955014 ZNF510,FC=-0.38,p=0.058502022 CTSL2,FC=0.15,p=0.483276164 TDRD7,FC=-0.32,p=0.005089275 TMOD1,FC=-1.31,p=2.95e-10 NCBP1,FC=0.12,p=0.417971007 XPA,FC=0.56,p=0.009679999 XPA,FC=-0.36,p=0.006404594 XPA,FC=-0.42,p=4.64e-05 FOXE1,FC=0.33,p=0.000204413 FOXE1,FC=0.54,p=0.019440481 FOXE1,FC=0.25,p=0.003958837 ANP32B,FC=-0.04,p=0.681750636 TRIM14,FC=-0.25,p=0.052750014 CORO2A,FC=-0.32,p=0.087916289 GABBR2,FC=0.74,p=0.004239908 COL15A1,FC=0.34,p=0.033765959 TGFBR1,FC=-0.10,p=0.68179885 TGFBR1,FC=-0.18,p=0.435800641 SEC61B,FC=0.10,p=0.191118833 NR4A3,FC=0.46,p=0.06027928 NR4A3,FC=-0.88,p=5.96e-05 NR4A3,FC=-1.35,p=8.7e-08 NR4A3,FC=-1.11,p=6.98e-07 NR4A3,FC=-1.03,p=6.48e-05 INVS,FC=-0.43,p=0.037683295 TMEFF1,FC=-0.34,p=0.227563277 BAAT,FC=-0.38,p=0.04655348 ZNF189,FC=-0.15,p=0.069981417 ALDOB,FC=-0.02,p=0.917917711 CYLC2,FC=-0.18,p=0.458041501 SMC2,FC=0.01,p=0.969064742 ABCA1,FC=-0.00,p=0.992136787 ABCA1,FC=0.30,p=0.049888691 ABCA1,FC=0.46,p=2.32e-07 FKTN,FC=-0.27,p=0.149384781

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=0.53,p=0.002294552 FANCC,FC=-0.32,p=0.180479258 PTCH1,FC=0.45,p=0.059084593 PTCH1,FC=0.10,p=0.720977548 HSD17B3,FC=-0.31,p=0.306096662 SLC35D2,FC=-0.61,p=1.87e-05 HABP4,FC=-0.19,p=0.436398954 CDC14B,FC=0.18,p=0.183200785 ZNF510,FC=-0.47,p=0.087284867 CTSL2,FC=1.67,p=5.94e-08 TDRD7,FC=-1.03,p=9.59e-06 TMOD1,FC=-2.13,p=1.94e-12 NCBP1,FC=0.58,p=0.000600578 XPA,FC=0.97,p=0.004660712 XPA,FC=-0.63,p=0.001806971 XPA,FC=-0.14,p=0.367327234 FOXE1,FC=0.24,p=0.081693339 FOXE1,FC=1.89,p=2.63e-05 FOXE1,FC=0.46,p=0.000614954 ANP32B,FC=0.63,p=7.36e-08 TRIM14,FC=-0.25,p=0.082572878 CORO2A,FC=0.30,p=0.163737988 GABBR2,FC=-0.02,p=0.946607855 COL15A1,FC=0.65,p=0.000432106 TGFBR1,FC=-0.67,p=0.0893842 TGFBR1,FC=-0.14,p=0.651567468 SEC61B,FC=0.01,p=0.915022969 NR4A3,FC=0.31,p=0.389067114 NR4A3,FC=-1.39,p=6.9e-05 NR4A3,FC=-1.83,p=3.9e-06 NR4A3,FC=-1.45,p=4.29e-06 NR4A3,FC=-1.60,p=0.000582237 INVS,FC=-0.28,p=0.26029791 TMEFF1,FC=-0.28,p=0.462010581 BAAT,FC=-0.41,p=0.101275191 ZNF189,FC=-0.45,p=0.001969586 ALDOB,FC=-0.35,p=0.150815424 CYLC2,FC=-0.13,p=0.718541303 SMC2,FC=0.55,p=0.127119188 ABCA1,FC=0.07,p=0.839376564 ABCA1,FC=0.74,p=0.000752228 ABCA1,FC=0.63,p=2.35e-07 FKTN,FC=0.01,p=0.959518746


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-0.25,p=0.00083048 FANCC,FC=-0.29,p=9.79e-09 PTCH1,FC=-0.16,p=0.05280635 PTCH1,FC=-0.84,p=2.12e-17 PTCH1,FC=-0.28,p=0.032574705 HSD17B3,FC=-0.47,p=3.62e-06 SLC35D2,FC=-0.10,p=0.340184942 SLC35D2,FC=-0.25,p=1.06e-05 HABP4,FC=-0.08,p=0.54161221 HABP4,FC=-0.02,p=0.892691009 CDC14B,FC=0.32,p=0.016239295 CDC14B,FC=0.09,p=0.291339881 CDC14B,FC=-0.18,p=0.002313716 CDC14B,FC=-0.12,p=0.071419816 ZNF510,FC=-0.25,p=1.79e-09 CTSL2,FC=0.57,p=1.45e-05 ZNF322B,FC=0.74,p=2.51e-12 TDRD7,FC=-0.30,p=4.92e-10 TMOD1,FC=-0.81,p=3.14e-33 TMOD1,FC=-1.98,p=8.89e-31 TSTD2,FC=-0.46,p=1.45e-16 NCBP1,FC=0.72,p=2.45e-19 NCBP1,FC=0.09,p=0.500503791 XPA,FC=-0.15,p=0.017703971 FOXE1,FC=0.48,p=0.013428708 C9orf156,FC=-0.39,p=0.001261786 C9orf156,FC=-0.34,p=9.98e-14 ANP32B,FC=-0.31,p=9.14e-14 ANP32B,FC=0.01,p=0.851431904 NANS,FC=0.47,p=2.63e-12 TRIM14,FC=0.41,p=3.52e-06 TRIM14,FC=0.19,p=0.015235812 TRIM14,FC=-0.36,p=0.00070483 TRIM14,FC=0.49,p=9.62e-07 CORO2A,FC=0.83,p=1.42e-16 TBC1D2,FC=-0.70,p=2.48e-09 GABBR2,FC=1.07,p=1.55e-13 GABBR2,FC=0.89,p=1.21e-11 GABBR2,FC=0.46,p=5.68e-07 GABBR2,FC=0.49,p=0.003572604 GALNT12,FC=0.14,p=0.227558915 COL15A1,FC=0.42,p=0.001036422 TGFBR1,FC=-0.00,p=0.966304864 SEC61B,FC=0.63,p=3.96e-21 NR4A3,FC=-0.04,p=0.625707641 NR4A3,FC=-2.42,p=2.17e-29 NR4A3,FC=-0.84,p=1.57e-12 STX17,FC=-0.17,p=0.001012713 ERP44,FC=-0.50,p=6.72e-07 ERP44,FC=-0.05,p=0.32609746 ERP44,FC=-0.48,p=8.35e-23 INVS,FC=-0.50,p=0.000988669 INVS,FC=0.01,p=0.972203873 INVS,FC=-0.08,p=0.167307474 TEX10,FC=-0.15,p=0.000420272 TMEFF1,FC=0.20,p=0.138850705 TMEFF1,FC=0.38,p=0.01115805 BAAT,FC=0.08,p=0.530577022 ZNF189,FC=-0.38,p=2.1e-08 ALDOB,FC=0.53,p=0.004241408 ALDOB,FC=0.87,p=3.72e-07 ALDOB,FC=-0.32,p=0.102799812 ALDOB,FC=0.29,p=0.008606131 CYLC2,FC=-0.29,p=1.3e-05 SMC2,FC=0.37,p=0.000142474 SMC2,FC=0.95,p=1.65e-17 NIPSNAP3B,FC=-0.23,p=0.000122119 ABCA1,FC=0.18,p=0.146416984 ABCA1,FC=-0.85,p=1.12e-23 ABCA1,FC=-0.39,p=3.85e-07 FKTN,FC=-0.27,p=0.001158815 TMEM38B,FC=0.29,p=0.002338716

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-3.74,p=2.76e-132 FANCC,FC=-0.05,p=0.432565983 PTCH1,FC=2.17,p=4.29e-82 PTCH1,FC=-0.10,p=0.353882261 PTCH1,FC=0.74,p=2e-08 HSD17B3,FC=4.06,p=1.11e-120 SLC35D2,FC=1.46,p=4.31e-39 SLC35D2,FC=-0.27,p=0.000388847 HABP4,FC=4.54,p=1.69e-66 HABP4,FC=4.88,p=2.97e-108 CDC14B,FC=0.47,p=0.0001439 CDC14B,FC=0.95,p=2.27e-07 CDC14B,FC=-2.38,p=1.51e-64 CDC14B,FC=-2.62,p=7.77e-57 ZNF510,FC=1.63,p=2.83e-82 CTSL2,FC=-0.71,p=1.4e-11 ZNF322B,FC=2.36,p=4.12e-98 TDRD7,FC=-1.51,p=7.2e-74 TMOD1,FC=0.68,p=1.22e-21 TMOD1,FC=1.69,p=3.97e-27 TSTD2,FC=-1.49,p=1.19e-45 NCBP1,FC=2.90,p=2.79e-101 NCBP1,FC=4.17,p=3.88e-60 XPA,FC=-0.73,p=5.44e-19 FOXE1,FC=0.60,p=0.000255719 C9orf156,FC=2.37,p=6.79e-79 C9orf156,FC=0.39,p=3.72e-11 ANP32B,FC=-1.50,p=1.49e-75 ANP32B,FC=-0.24,p=8.01e-06 NANS,FC=-3.31,p=6.6e-97 TRIM14,FC=-0.72,p=3.22e-12 TRIM14,FC=-0.64,p=5.13e-15 TRIM14,FC=-0.26,p=0.041940517 TRIM14,FC=0.83,p=9.84e-23 CORO2A,FC=2.17,p=2.56e-36 TBC1D2,FC=-0.42,p=0.000251472 GABBR2,FC=-0.40,p=0.013686557 GABBR2,FC=1.98,p=2.76e-48 GABBR2,FC=2.58,p=2.33e-85 GABBR2,FC=-0.63,p=6.35e-07 GALNT12,FC=-0.96,p=4.08e-24 COL15A1,FC=-0.00,p=0.981646061 TGFBR1,FC=0.89,p=7.95e-16 SEC61B,FC=-1.34,p=1.13e-67 NR4A3,FC=6.52,p=1.27e-175 NR4A3,FC=-2.38,p=1.49e-29 NR4A3,FC=-2.31,p=1.77e-46 STX17,FC=-0.21,p=0.0008452 ERP44,FC=-2.42,p=2.57e-38 ERP44,FC=-7.18,p=8.59e-159 ERP44,FC=-6.06,p=1.82e-109 INVS,FC=0.14,p=0.362999347 INVS,FC=3.36,p=2.09e-46 INVS,FC=2.18,p=4.16e-95 TEX10,FC=-3.69,p=6.23e-58 TMEFF1,FC=-0.50,p=0.00093718 TMEFF1,FC=-1.47,p=3.39e-23 BAAT,FC=0.37,p=0.109101243 ZNF189,FC=-0.44,p=8.64e-14 ALDOB,FC=3.43,p=4.33e-55 ALDOB,FC=0.14,p=0.365210608 ALDOB,FC=5.63,p=1.74e-78 ALDOB,FC=3.89,p=7.52e-90 CYLC2,FC=-0.68,p=1.98e-08 SMC2,FC=1.62,p=3.29e-47 SMC2,FC=1.48,p=1.08e-20 NIPSNAP3B,FC=-1.84,p=1.95e-35 ABCA1,FC=1.91,p=3.28e-42 ABCA1,FC=-1.03,p=5.4e-32 ABCA1,FC=-1.48,p=1.12e-45 FKTN,FC=-0.11,p=0.059673137 TMEM38B,FC=3.52,p=2.22e-111


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-0.06,p=0.554378474 C9orf3,FC=-0.30,p=0.001682685 C9orf3,FC=0.39,p=0.022638468 C9orf3,FC=0.44,p=0.004988547 C9orf3,FC=0.12,p=0.454185039 FANCC,FC=-0.82,p=0.000116292 FANCC,FC=0.21,p=0.036538231 FANCC,FC=-0.03,p=0.886792863 FANCC,FC=0.25,p=0.153843915 PTCH1,FC=-0.33,p=0.072332851 PTCH1,FC=0.30,p=0.068595713 PTCH1,FC=0.32,p=0.046253443 PTCH1,FC=-1.18,p=1.65e-17 C9orf130,FC=-0.29,p=0.021249078 C9orf102,FC=-0.65,p=0.004092103 C9orf102,FC=-0.11,p=0.446149964 C9orf102,FC=-0.90,p=7.61e-07 C9orf102,FC=0.49,p=0.003837954 C9orf102,FC=-0.44,p=2.11e-05 NCRNA00092,FC=0.01,p=0.912306663 HSD17B3,FC=-0.10,p=0.587400308 SLC35D2,FC=-0.50,p=7.49e-07 SLC35D2,FC=-0.12,p=0.085684495 SLC35D2,FC=-0.47,p=1.34e-05 ZNF367,FC=0.29,p=0.144161901 HABP4,FC=-0.03,p=0.901435229 HABP4,FC=-0.27,p=0.020276232 HABP4,FC=-0.32,p=0.000840578 HABP4,FC=-0.40,p=2.26e-05 CDC14B,FC=0.86,p=1.53e-11 CDC14B,FC=-0.00,p=0.999559578 CDC14B,FC=0.46,p=0.005065333 CDC14B,FC=-0.15,p=0.077964311 CDC14B,FC=-0.33,p=5.56e-05 CDC14B,FC=0.23,p=0.190551408 C9orf21,FC=-0.85,p=1.98e-12 ZNF510,FC=0.03,p=0.686739505 ZNF782,FC=-0.25,p=0.196256593 HIATL2,FC=0.45,p=0.005412085 CTSL2,FC=1.16,p=3.15e-11 PTCD1,FC=-0.56,p=0.002090659 ZNF322B,FC=0.73,p=1.27e-09 KIAA1529,FC=-1.60,p=4.31e-14 KIAA1529,FC=-1.97,p=6.68e-19 TDRD7,FC=-0.66,p=1.88e-15 TMOD1,FC=-0.86,p=1.95e-11 TMOD1,FC=-2.62,p=1.52e-28 TSTD2,FC=-0.23,p=0.235407802 TSTD2,FC=-0.35,p=5.79e-09 NCBP1,FC=0.31,p=0.003464989 NCBP1,FC=0.20,p=0.259288149 XPA,FC=-0.72,p=1.94e-10 FOXE1,FC=1.18,p=2.72e-05 C9orf156,FC=-0.69,p=6.02e-07 C9orf156,FC=0.04,p=0.575887523 HEMGN,FC=0.19,p=0.28166081 HEMGN,FC=-0.79,p=0.000150363 ANP32B,FC=-0.16,p=0.003406184 ANP32B,FC=-0.31,p=9.9e-05 NANS,FC=0.27,p=0.070648561 NANS,FC=0.11,p=0.20045456 TRIM14,FC=-0.03,p=0.851875386 TRIM14,FC=0.36,p=0.001663957 TRIM14,FC=0.42,p=0.040344054 TRIM14,FC=1.07,p=6.66e-11 TRIM14,FC=-0.34,p=0.000910017 CORO2A,FC=0.16,p=0.081508458 TBC1D2,FC=-0.90,p=6.62e-15 GABBR2,FC=0.36,p=0.137747079 GABBR2,FC=0.87,p=1.19e-06 GABBR2,FC=0.36,p=0.022249933 GABBR2,FC=0.79,p=2.91e-06 GABBR2,FC=0.61,p=0.002159936 GABBR2,FC=0.96,p=7.62e-07 ANKS6,FC=0.22,p=0.016336697 ANKS6,FC=-0.07,p=0.729370654 ANKS6,FC=0.21,p=0.300070013 ANKS6,FC=-0.35,p=0.059904428 GALNT12,FC=-0.32,p=0.072968392 GALNT12,FC=-0.55,p=0.000122991 COL15A1,FC=0.41,p=0.017297138 TGFBR1,FC=0.31,p=0.138419277 TGFBR1,FC=-0.30,p=0.000922711 TGFBR1,FC=-0.70,p=7.72e-07 ALG2,FC=-0.10,p=0.194426875 SEC61B,FC=0.02,p=0.792894725 SEC61B,FC=0.09,p=0.566559645 NR4A3,FC=-1.66,p=5.4e-13 NR4A3,FC=0.30,p=0.057104628 NR4A3,FC=-3.08,p=8.06e-30 STX17,FC=-0.30,p=7.36e-06 STX17,FC=-0.11,p=0.568633208 STX17,FC=0.35,p=1.44e-09 STX17,FC=-0.47,p=6.96e-12 STX17,FC=-0.33,p=2.59e-05 ERP44,FC=-1.60,p=3.12e-21 ERP44,FC=-0.01,p=0.846655426 ERP44,FC=-0.41,p=2.64e-07 INVS,FC=0.21,p=0.003232318 INVS,FC=-0.48,p=0.011072447 INVS,FC=0.01,p=0.970019669 TEX10,FC=0.26,p=0.000165589 C9orf30,FC=0.20,p=0.002878851 C9orf30,FC=-0.25,p=0.01722101 TMEFF1,FC=-0.38,p=0.10544119 TMEFF1,FC=-0.13,p=0.481196459 MURC,FC=-0.12,p=0.588678214 BAAT,FC=0.85,p=0.000137228 MRPL50,FC=0.24,p=0.028336407 MRPL50,FC=0.13,p=0.182352655 MRPL50,FC=0.27,p=0.110969041 ZNF189,FC=-0.24,p=0.000849513 ALDOB,FC=0.61,p=0.010977595 ALDOB,FC=-0.05,p=0.854394464 ALDOB,FC=0.49,p=0.01125591 ALDOB,FC=-1.55,p=4.15e-12 ALDOB,FC=0.95,p=8.22e-05 C9orf125,FC=-1.38,p=1.1e-11 RNF20,FC=-0.06,p=0.201824845 GRIN3A,FC=0.78,p=5.67e-05 GRIN3A,FC=0.07,p=0.701344018 ADSSL1,FC=0.56,p=5.07e-06 CYLC2,FC=0.52,p=0.002810029 SMC2,FC=0.49,p=0.000285924 SMC2,FC=0.12,p=0.305042845 FLJ36031,FC=-0.25,p=0.142812599 NIPSNAP3A,FC=-0.46,p=1.47e-06 NIPSNAP3A,FC=0.36,p=0.042785448 NIPSNAP3B,FC=-0.23,p=0.052657291 NIPSNAP3B,FC=-0.03,p=0.843429712 ABCA1,FC=-0.42,p=0.033159867 ABCA1,FC=-0.23,p=0.014786305 ABCA1,FC=-0.29,p=0.017490267 ABCA1,FC=0.01,p=0.956473396 SLC44A1,FC=-0.28,p=0.010252297 SLC44A1,FC=0.98,p=8.54e-13 SLC44A1,FC=0.43,p=4.05e-09 FSD1L,FC=-0.37,p=0.000100683 FSD1L,FC=-0.20,p=0.393540551 FKTN,FC=-0.17,p=0.015489713 TAL2,FC=-0.02,p=0.924764747 TAL2,FC=0.18,p=0.109822771 TMEM38B,FC=0.19,p=0.102618156 TMEM38B,FC=0.35,p=0.00063343 TMEM38B,FC=-0.51,p=8.87e-05 ZNF462,FC=-0.18,p=0.241950817 ZNF462,FC=0.27,p=0.027728175

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-0.02,p=0.804063294 C9orf3,FC=0.24,p=0.022787266 C9orf3,FC=0.61,p=1.11e-05 C9orf3,FC=0.32,p=0.001048813 C9orf3,FC=0.31,p=0.013299268 FANCC,FC=-1.64,p=1.66e-09 FANCC,FC=0.92,p=5.49e-16 FANCC,FC=0.55,p=0.004660482 FANCC,FC=0.21,p=0.279573137 PTCH1,FC=0.12,p=0.49317852 PTCH1,FC=0.62,p=0.00129357 PTCH1,FC=0.92,p=1.05e-08 PTCH1,FC=-0.79,p=1.55e-06 C9orf130,FC=-0.28,p=0.024943943 C9orf102,FC=-1.20,p=3.84e-06 C9orf102,FC=0.08,p=0.641436264 C9orf102,FC=-1.23,p=2.2e-08 C9orf102,FC=0.64,p=0.000210523 C9orf102,FC=-0.51,p=0.000135757 NCRNA00092,FC=0.41,p=0.000947716 HSD17B3,FC=0.78,p=0.001506768 SLC35D2,FC=-0.82,p=3.66e-12 SLC35D2,FC=-0.40,p=2.65e-05 SLC35D2,FC=-1.00,p=5.43e-10 ZNF367,FC=1.23,p=1.72e-07 HABP4,FC=0.16,p=0.48540087 HABP4,FC=-0.72,p=8.92e-06 HABP4,FC=-0.59,p=1.16e-09 HABP4,FC=-0.55,p=8.07e-07 CDC14B,FC=1.30,p=5.2e-20 CDC14B,FC=0.10,p=0.167313685 CDC14B,FC=0.85,p=6.07e-06 CDC14B,FC=-0.30,p=0.004006603 CDC14B,FC=-0.39,p=0.000200092 CDC14B,FC=-0.15,p=0.41717313 C9orf21,FC=-1.24,p=3.34e-12 ZNF510,FC=0.29,p=0.001329903 ZNF782,FC=-0.93,p=7.94e-05 HIATL2,FC=0.56,p=0.001216362 CTSL2,FC=2.81,p=1.72e-36 PTCD1,FC=-1.00,p=2.85e-05 ZNF322B,FC=0.88,p=8.18e-10 KIAA1529,FC=-2.02,p=4.14e-16 KIAA1529,FC=-2.33,p=8.61e-20 TDRD7,FC=-1.04,p=4.32e-17 TMOD1,FC=-1.16,p=3.3e-11 TMOD1,FC=-3.30,p=7.63e-32 TSTD2,FC=-0.49,p=0.019778626 TSTD2,FC=-0.35,p=3.36e-07 NCBP1,FC=0.54,p=1.65e-05 NCBP1,FC=-0.02,p=0.922694419 XPA,FC=-0.69,p=4.87e-06 FOXE1,FC=5.03,p=1.86e-30 C9orf156,FC=-1.16,p=1.55e-09 C9orf156,FC=0.15,p=0.038539303 HEMGN,FC=0.45,p=0.040126495 HEMGN,FC=-0.86,p=0.000578013 ANP32B,FC=0.19,p=0.006461523 ANP32B,FC=0.02,p=0.844421417 NANS,FC=0.43,p=0.024168078 NANS,FC=-0.22,p=0.026312942 TRIM14,FC=-0.11,p=0.594066748 TRIM14,FC=0.53,p=3.55e-06 TRIM14,FC=1.12,p=4.16e-06 TRIM14,FC=1.31,p=5.93e-13 TRIM14,FC=-0.78,p=2.65e-09 CORO2A,FC=0.71,p=1.1e-07 TBC1D2,FC=-0.36,p=0.009093184 GABBR2,FC=-0.27,p=0.232992107 GABBR2,FC=1.18,p=2.18e-10 GABBR2,FC=0.29,p=0.121070456 GABBR2,FC=1.34,p=5.35e-13 GABBR2,FC=0.69,p=0.000583229 GABBR2,FC=0.65,p=0.001780504 ANKS6,FC=0.47,p=8.99e-06 ANKS6,FC=-0.81,p=0.000338228 ANKS6,FC=0.18,p=0.474133081 ANKS6,FC=-0.82,p=0.000270093 GALNT12,FC=-1.08,p=4.77e-09 GALNT12,FC=-1.64,p=8.93e-18 COL15A1,FC=0.53,p=0.00944445 TGFBR1,FC=-0.13,p=0.581240862 TGFBR1,FC=-0.14,p=0.062364923 TGFBR1,FC=-1.24,p=1.82e-12 ALG2,FC=-0.50,p=5.87e-07 SEC61B,FC=-0.21,p=0.015977794 SEC61B,FC=0.19,p=0.171579156 NR4A3,FC=-1.92,p=3.47e-14 NR4A3,FC=0.20,p=0.204400469 NR4A3,FC=-3.69,p=2.64e-31 STX17,FC=-0.31,p=9.17e-05 STX17,FC=0.06,p=0.751138937 STX17,FC=0.52,p=1.11e-12 STX17,FC=-0.55,p=1.04e-09 STX17,FC=-0.48,p=2.54e-07 ERP44,FC=-2.14,p=9.74e-23 ERP44,FC=-0.01,p=0.83950303 ERP44,FC=-0.06,p=0.458188799 INVS,FC=0.45,p=1.46e-07 INVS,FC=-0.93,p=2.45e-05 INVS,FC=0.47,p=0.004171494 TEX10,FC=0.92,p=1.26e-25 C9orf30,FC=0.68,p=2.22e-14 C9orf30,FC=-0.11,p=0.438120138 TMEFF1,FC=0.28,p=0.27510367 TMEFF1,FC=0.37,p=0.059642096 MURC,FC=-0.52,p=0.055541454 BAAT,FC=0.62,p=0.003401222 MRPL50,FC=0.53,p=8.77e-06 MRPL50,FC=0.25,p=0.021653819 MRPL50,FC=-0.45,p=0.02260016 ZNF189,FC=-0.35,p=5.55e-05 ALDOB,FC=-0.17,p=0.44033562 ALDOB,FC=-0.18,p=0.523727983 ALDOB,FC=0.43,p=0.005008145 ALDOB,FC=-2.26,p=1.35e-15 ALDOB,FC=-0.07,p=0.684037523 C9orf125,FC=0.54,p=0.002515586 RNF20,FC=0.30,p=2.34e-07 GRIN3A,FC=0.55,p=0.020933039 GRIN3A,FC=0.15,p=0.394208946 ADSSL1,FC=0.77,p=1.3e-07 CYLC2,FC=0.89,p=5.89e-06 SMC2,FC=1.14,p=2.98e-12 SMC2,FC=0.66,p=1.75e-06 FLJ36031,FC=0.16,p=0.413097544 NIPSNAP3A,FC=-0.52,p=6.75e-06 NIPSNAP3A,FC=0.49,p=0.022743089 NIPSNAP3B,FC=-0.37,p=0.011534971 NIPSNAP3B,FC=0.21,p=0.072702347 ABCA1,FC=0.01,p=0.957462918 ABCA1,FC=-0.00,p=0.976193776 ABCA1,FC=0.02,p=0.85550082 ABCA1,FC=0.12,p=0.55058374 SLC44A1,FC=0.21,p=0.088015535 SLC44A1,FC=1.95,p=1.3e-30 SLC44A1,FC=0.93,p=2.51e-22 FSD1L,FC=-0.54,p=9.15e-08 FSD1L,FC=-0.71,p=0.013948968 FKTN,FC=-0.19,p=0.038026071 TAL2,FC=-0.26,p=0.233876699 TAL2,FC=0.18,p=0.131976761 TMEM38B,FC=0.80,p=2.79e-08 TMEM38B,FC=1.00,p=3.59e-17 TMEM38B,FC=-0.18,p=0.24626511 ZNF462,FC=0.64,p=6.43e-07 ZNF462,FC=0.74,p=2.32e-05


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=0.74,p=0.040109363 FANCC,FC=0.15,p=0.600993649 HSD17B3,FC=-0.47,p=0.05396205 CDC14B,FC=0.14,p=0.615534667 CDC14B,FC=-0.03,p=0.94174434 CDC14B,FC=0.55,p=0.06366724 NCBP1,FC=0.05,p=0.900428544 NCBP1,FC=1.16,p=0.090586289 XPA,FC=-0.03,p=0.890427667 TRIM14,FC=0.15,p=0.63825018 TRIM14,FC=0.53,p=0.037125997 COL15A1,FC=2.12,p=0.000701551 SEC61B,FC=0.27,p=0.326976026 NR4A3,FC=1.00,p=0.001039249 TMEFF1,FC=0.51,p=0.325542271 BAAT,FC=-0.88,p=0.116764968 ZNF189,FC=-0.06,p=0.783705283 ALDOB,FC=0.85,p=0.020131149

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=1.07,p=0.003667448 FANCC,FC=0.32,p=0.454054279 HSD17B3,FC=-0.29,p=0.316325691 CDC14B,FC=0.11,p=0.769762088 CDC14B,FC=0.17,p=0.563276073 CDC14B,FC=0.50,p=0.064180801 NCBP1,FC=0.49,p=0.104370276 NCBP1,FC=0.90,p=0.075128768 XPA,FC=0.30,p=0.339183183 TRIM14,FC=0.02,p=0.940374253 TRIM14,FC=0.68,p=0.025239523 COL15A1,FC=1.73,p=0.004243864 SEC61B,FC=0.25,p=0.43184183 NR4A3,FC=0.47,p=0.400893983 TMEFF1,FC=0.90,p=0.0092226 BAAT,FC=-0.19,p=0.733616868 ZNF189,FC=0.15,p=0.630639021 ALDOB,FC=1.21,p=0.000908327


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-0.08,p=0.152509847 FANCC,FC=0.03,p=0.334136481 FANCC,FC=-0.25,p=0.000799703 FANCC,FC=0.09,p=0.071458877 C9orf102,FC=0.17,p=0.018590181 HSD17B3,FC=-0.07,p=0.430826194 SLC35D2,FC=-0.02,p=0.687354135 SLC35D2,FC=-0.09,p=0.00880478 HABP4,FC=0.10,p=0.00973891 C9orf21,FC=-0.13,p=0.015173266 ZNF510,FC=0.10,p=0.139245451 HIATL2,FC=0.11,p=0.002150955 CTSL2,FC=0.42,p=0.023557424 PTCD1,FC=0.12,p=0.11144985 ZNF322B,FC=0.25,p=0.015324202 KIAA1529,FC=0.02,p=0.69341704 TDRD7,FC=-0.09,p=0.033993894 NCBP1,FC=0.15,p=0.036436293 XPA,FC=-0.17,p=0.001075572 FOXE1,FC=0.08,p=0.03613602 HEMGN,FC=-0.17,p=0.078862515 HEMGN,FC=0.21,p=0.075910258 ANP32B,FC=-0.12,p=0.007383317 NANS,FC=-0.09,p=0.463156893 NANS,FC=0.03,p=0.709210359 TRIM14,FC=-0.03,p=0.661766983 CORO2A,FC=0.03,p=0.72059879 CORO2A,FC=0.05,p=0.033004848 TBC1D2,FC=-0.44,p=4.99e-05 GALNT12,FC=0.07,p=0.507326702 GALNT12,FC=0.08,p=0.382502627 COL15A1,FC=-0.00,p=0.978041016 TGFBR1,FC=-0.01,p=0.843037814 ALG2,FC=-0.03,p=0.433023974 SEC61B,FC=0.12,p=0.067753393 NR4A3,FC=-0.08,p=0.023521002 STX17,FC=0.01,p=0.650675717 INVS,FC=0.02,p=0.636941331 TMEFF1,FC=0.09,p=0.090483044 BAAT,FC=0.10,p=0.059005834 MRPL50,FC=0.34,p=4.79e-06 ZNF189,FC=0.02,p=0.40121044 ALDOB,FC=0.01,p=0.750639465 RNF20,FC=-0.11,p=0.006116359 GRIN3A,FC=0.08,p=0.263028451 CYLC2,FC=0.07,p=0.537918817 NIPSNAP3A,FC=0.02,p=0.73164537 NIPSNAP3B,FC=0.03,p=0.197937101 ABCA1,FC=-0.03,p=0.220054435 TAL2,FC=0.05,p=0.016263265 ZNF462,FC=0.09,p=0.238912862 ZNF462,FC=0.05,p=0.603183567

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C9orf3,FC=-0.04,p=0.570399615 FANCC,FC=0.05,p=0.165515541 FANCC,FC=-0.29,p=0.002196083 FANCC,FC=0.11,p=0.027809852 C9orf102,FC=0.18,p=0.006153302 HSD17B3,FC=0.00,p=0.986790776 SLC35D2,FC=-0.11,p=0.061815596 SLC35D2,FC=-0.11,p=0.013721075 HABP4,FC=0.10,p=0.013276659 C9orf21,FC=-0.19,p=0.007319129 ZNF510,FC=0.09,p=0.262091482 HIATL2,FC=0.11,p=0.000138722 CTSL2,FC=1.18,p=2.05e-09 PTCD1,FC=0.17,p=0.005686314 ZNF322B,FC=0.24,p=0.01693074 KIAA1529,FC=0.02,p=0.77083585 TDRD7,FC=-0.14,p=0.006629455 NCBP1,FC=0.29,p=2.03e-05 XPA,FC=-0.13,p=0.045766135 FOXE1,FC=0.33,p=0.000905597 HEMGN,FC=-0.17,p=0.107545095 HEMGN,FC=0.23,p=0.034573264 ANP32B,FC=0.03,p=0.696970401 NANS,FC=-0.11,p=0.190696012 NANS,FC=0.01,p=0.932077694 TRIM14,FC=-0.05,p=0.482297525 CORO2A,FC=0.18,p=0.042343546 CORO2A,FC=0.13,p=0.00931178 TBC1D2,FC=-0.22,p=0.021004127 GALNT12,FC=-0.23,p=0.003479608 GALNT12,FC=-0.09,p=0.10411913 COL15A1,FC=-0.00,p=0.953683026 TGFBR1,FC=-0.01,p=0.626843922 ALG2,FC=-0.03,p=0.495640906 SEC61B,FC=0.17,p=0.001942572 NR4A3,FC=-0.08,p=0.078141164 STX17,FC=-0.00,p=0.981897366 INVS,FC=0.05,p=0.19648221 TMEFF1,FC=0.11,p=0.041066939 BAAT,FC=0.05,p=0.21489443 MRPL50,FC=0.50,p=4.92e-09 ZNF189,FC=0.02,p=0.527186817 ALDOB,FC=0.01,p=0.570591452 RNF20,FC=-0.06,p=0.195919173 GRIN3A,FC=0.10,p=0.29570294 CYLC2,FC=0.06,p=0.459525295 NIPSNAP3A,FC=0.06,p=0.20831331 NIPSNAP3B,FC=0.04,p=0.065387859 ABCA1,FC=-0.03,p=0.419891614 TAL2,FC=0.03,p=0.151790847 ZNF462,FC=0.12,p=0.098909301 ZNF462,FC=0.08,p=0.320675849


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-23b,Mean=0.53

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-23b,Mean=0.39

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-23b,Mean=-0.08 hsa-mir-27b,Mean=0.04

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-23b,Mean=-0.16 hsa-mir-27b,Mean=-0.04

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

C9orf3,FC=-0.63,p=3.98e-13 FANCC,FC=-0.53,p=6.41e-13 PTCH1,FC=-0.56,p=4.87e-08 PTCH1,FC=-0.72,p=3.4e-10 PTCH1,FC=-0.57,p=0.000138542 HSD17B3,FC=-0.64,p=2.31e-09 SLC35D2,FC=-0.13,p=0.271785823 SLC35D2,FC=-0.22,p=0.000540751 HABP4,FC=-0.14,p=0.33656349 HABP4,FC=-0.12,p=0.459386419 CDC14B,FC=0.11,p=0.481389023 CDC14B,FC=0.40,p=2.89e-05 CDC14B,FC=-0.18,p=0.006143329 CDC14B,FC=-0.10,p=0.136244263 ZNF510,FC=-0.48,p=6.42e-19 CTSL2,FC=0.26,p=0.05522688 ZNF322B,FC=0.99,p=4.67e-19 TDRD7,FC=-0.57,p=6.22e-20 TMOD1,FC=-1.15,p=1.23e-39 TMOD1,FC=-2.02,p=2.38e-19 TSTD2,FC=-0.38,p=1.81e-12 NCBP1,FC=0.83,p=4.04e-19 NCBP1,FC=0.64,p=1.31e-06 XPA,FC=-0.20,p=0.001649737 FOXE1,FC=0.30,p=0.170429389 C9orf156,FC=-0.41,p=0.000795562 C9orf156,FC=-0.57,p=1.12e-23 ANP32B,FC=-0.42,p=2.17e-18 ANP32B,FC=0.34,p=2.43e-07 NANS,FC=0.51,p=8.22e-11 TRIM14,FC=0.99,p=6.72e-20 TRIM14,FC=0.26,p=0.00359845 TRIM14,FC=-0.34,p=0.00480655 TRIM14,FC=1.24,p=6.99e-35 CORO2A,FC=1.01,p=8.54e-17 TBC1D2,FC=-0.40,p=0.000710152 GABBR2,FC=0.94,p=1.86e-09 GABBR2,FC=0.70,p=1.22e-06 GABBR2,FC=0.29,p=0.000299324 GABBR2,FC=0.33,p=0.10100311 GALNT12,FC=0.34,p=0.001173932 COL15A1,FC=0.64,p=5.07e-05 TGFBR1,FC=0.16,p=0.144842829 SEC61B,FC=0.52,p=4.76e-17 NR4A3,FC=-0.12,p=0.292907589 NR4A3,FC=-2.38,p=8.06e-19 NR4A3,FC=-0.72,p=1.15e-07 STX17,FC=0.04,p=0.506468059 ERP44,FC=-0.44,p=4.71e-06 ERP44,FC=0.01,p=0.785358357 ERP44,FC=-0.71,p=5.22e-32 INVS,FC=-0.42,p=0.010810737 INVS,FC=0.44,p=0.02920527 INVS,FC=0.22,p=0.000676917 TEX10,FC=-0.26,p=1.44e-09 TMEFF1,FC=0.39,p=0.006407569 TMEFF1,FC=0.49,p=0.004194667 BAAT,FC=0.77,p=2.56e-05 ZNF189,FC=-0.24,p=0.000428841 ALDOB,FC=0.60,p=0.003865457 ALDOB,FC=0.71,p=0.000468193 ALDOB,FC=-0.20,p=0.344004201 ALDOB,FC=0.21,p=0.103819791 CYLC2,FC=-0.54,p=3.48e-10 SMC2,FC=0.44,p=4.2e-06 SMC2,FC=0.98,p=2.33e-14 NIPSNAP3B,FC=-0.50,p=2.7e-09 ABCA1,FC=-0.01,p=0.93835341 ABCA1,FC=-0.91,p=1.38e-25 ABCA1,FC=-0.56,p=2.18e-11 FKTN,FC=-0.23,p=0.000128603 TMEM38B,FC=0.53,p=1.31e-05

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-279I21, 7/50, 0.14 RP11-279I21, 0/50, 0 RP11-435O5, 3/50, 0.06 RP11-435O5, 4/50, 0.08 RP11-160D19, 7/50, 0.14 RP11-160D19, 2/50, 0.04 RP11-240L7, 6/50, 0.12 RP11-240L7, 1/50, 0.02 RP11-23J9, 9/50, 0.18 RP11-23J9, 2/50, 0.04 RP11-23B15, 10/50, 0.2 RP11-23B15, 3/50, 0.06 RP11-92C4, 3/50, 0.06 RP11-92C4, 2/50, 0.04 RP11-192E23, 6/50, 0.12 RP11-192E23, 5/50, 0.1 RP11-96L7, 5/50, 0.1 RP11-96L7, 3/50, 0.06 RP11-547C13, 2/50, 0.04 RP11-547C13, 4/50, 0.08 RP11-208F1, 4/50, 0.08 RP11-208F1, 0/50, 0 RP11-80H12, 4/50, 0.08 RP11-80H12, 6/50, 0.12 RP11-75J9, 4/50, 0.08 RP11-75J9, 6/50, 0.12 RP11-318L4, 2/50, 0.04 RP11-318L4, 10/50, 0.2 RP11-185E13, 3/50, 0.06 RP11-185E13, 10/50, 0.2 RP11-31J20, 6/50, 0.12 RP11-31J20, 2/50, 0.04 RP11-287A8, 0/50, 0 RP11-287A8, 1/50, 0.02 RP11-540H22, 1/50, 0.02 RP11-540H22, 10/50, 0.2

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12599234

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S1112, 22/35, 63% D9S287, 10/17, 59% PMID=10987304 D9S1690, 7/18, 39% D9S910, 2/11, 18% PMID=15900585 D9S910, 2/12, 17%

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