IGDB.NSCLC Chromosome View

Chromosome 13
13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

GJB2, down, 85/138(62%) LATS2, 0.50%, 1/202 FLT1, 2.48%, 5/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      MPHOSPH8,FC=-0.28,p=0.116488244 ZMYM2,FC=0.25,p=0.003065252 IFT88,FC=-0.99,p=2.18e-05 SAP18,FC=-0.06,p=0.562929882 SAP18,FC=0.03,p=0.625098122 SAP18,FC=-0.92,p=1.03e-08 EFHA1,FC=-0.20,p=0.083487104 FGF9,FC=-0.48,p=0.019700058 FGF9,FC=-0.31,p=0.14031506 SGCG,FC=-1.28,p=4.15e-13 SACS,FC=-0.18,p=0.349757722 MIPEP,FC=-0.13,p=0.601040415 PARP4,FC=0.03,p=0.804057729 ATP12A,FC=0.10,p=0.58941496 MTMR6,FC=-0.51,p=2.78e-07 NUPL1,FC=-0.09,p=0.671584212 ATP8A2,FC=-0.36,p=0.151228937 ATP8A2,FC=0.49,p=0.004227178 RNF6,FC=-0.13,p=0.152187805 CDK8,FC=0.22,p=0.024338854 CDK8,FC=0.24,p=0.027277619 WASF3,FC=-1.75,p=7.6e-14 GPR12,FC=0.07,p=0.686475491 GTF3A,FC=0.31,p=0.001887799 PDX1,FC=0.13,p=0.473398062 CDX2,FC=0.49,p=0.051072853 CDX2,FC=0.48,p=0.001266236 FLT3,FC=-0.17,p=0.351607365 FLT3,FC=0.21,p=0.248796512 SLC46A3,FC=0.14,p=0.246303734 KIAA0774,FC=0.41,p=0.073922252 SLC7A1,FC=0.60,p=5.84e-05 SLC7A1,FC=1.05,p=2.27e-13 UBL3,FC=-1.10,p=2.9e-14 USPL1,FC=-0.06,p=0.709686644 ALOX5AP,FC=-1.66,p=2.24e-19

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      MPHOSPH8,FC=-0.15,p=0.602107268 ZMYM2,FC=0.22,p=0.031881493 IFT88,FC=-1.38,p=2.02e-05 SAP18,FC=-0.10,p=0.45123169 SAP18,FC=-0.05,p=0.597189727 SAP18,FC=-1.06,p=6.24e-08 EFHA1,FC=-0.24,p=0.057285588 FGF9,FC=-1.03,p=7.16e-05 FGF9,FC=-0.76,p=0.01309752 SGCG,FC=-0.67,p=0.008142957 SACS,FC=-0.11,p=0.637316957 MIPEP,FC=-0.12,p=0.720608453 PARP4,FC=-0.35,p=0.036467089 ATP12A,FC=0.70,p=0.011283274 MTMR6,FC=-0.58,p=6.18e-06 NUPL1,FC=-0.87,p=0.002168409 ATP8A2,FC=-0.54,p=0.151468474 ATP8A2,FC=0.93,p=0.000122812 RNF6,FC=0.11,p=0.4016827 CDK8,FC=0.09,p=0.535038808 CDK8,FC=0.42,p=0.003973635 WASF3,FC=-1.71,p=7.15e-09 GPR12,FC=-0.38,p=0.125061898 GTF3A,FC=0.22,p=0.110758291 PDX1,FC=-0.08,p=0.748425573 CDX2,FC=0.24,p=0.397619712 CDX2,FC=0.58,p=0.000410998 FLT3,FC=0.14,p=0.604396689 FLT3,FC=0.60,p=0.014633454 SLC46A3,FC=-0.04,p=0.716152578 KIAA0774,FC=0.83,p=0.010381621 SLC7A1,FC=1.63,p=2.97e-15 SLC7A1,FC=1.49,p=1.75e-09 UBL3,FC=-1.84,p=3.21e-16 USPL1,FC=0.03,p=0.846716303 ALOX5AP,FC=-2.21,p=1.82e-17


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      MPHOSPH8,FC=0.24,p=0.002896264 PSPC1,FC=0.04,p=0.410383162 ZMYM5,FC=0.02,p=0.800093756 ZMYM5,FC=0.12,p=0.104912402 ZMYM2,FC=0.54,p=8.06e-06 ZMYM2,FC=0.19,p=0.160432722 ZMYM2,FC=0.34,p=1.4e-07 GJA3,FC=-0.09,p=0.17663556 CRYL1,FC=-0.40,p=9.73e-15 IFT88,FC=-0.68,p=4.69e-33 XPO4,FC=0.05,p=0.411068183 SAP18,FC=-0.98,p=8.53e-33 SAP18,FC=-0.65,p=6.41e-17 SAP18,FC=0.27,p=8.78e-07 MRP63,FC=0.08,p=0.1334389 MRP63,FC=-0.00,p=0.939650105 EFHA1,FC=-0.13,p=0.076855924 FGF9,FC=-0.80,p=3.28e-07 SGCG,FC=-3.14,p=9.86e-80 SACS,FC=-0.16,p=0.107882396 MIPEP,FC=0.37,p=0.002041662 MIPEP,FC=-0.28,p=0.000110117 PCOTH,FC=-0.17,p=0.175542866 PARP4,FC=-0.13,p=0.009703099 ATP12A,FC=-0.44,p=5.14e-06 RNF17,FC=-0.28,p=0.000595912 RNF17,FC=0.46,p=0.003169897 CENPJ,FC=0.28,p=0.000121392 PABPC3,FC=0.65,p=3.72e-20 MTMR6,FC=-0.41,p=1.47e-07 NUPL1,FC=-0.07,p=0.449739333 ATP8A2,FC=-0.87,p=1.38e-17 RNF6,FC=1.02,p=7.69e-08 RNF6,FC=-0.06,p=0.510771336 CDK8,FC=0.18,p=0.025707896 WASF3,FC=-1.42,p=3.61e-53 GPR12,FC=-0.30,p=1.48e-07 GTF3A,FC=0.25,p=1.72e-06 GTF3A,FC=0.33,p=1.7e-08 POLR1D,FC=-0.16,p=0.02040017 PDX1,FC=-0.53,p=7.41e-06 PDX1,FC=0.63,p=7.3e-09 CDX2,FC=-0.32,p=0.0002302 FLT3,FC=-0.29,p=0.001090942 FLT1,FC=0.15,p=0.272421796 POMP,FC=0.08,p=0.083255021 SLC46A3,FC=-0.48,p=1.78e-07 KIAA0774,FC=-0.40,p=0.007133067 SLC7A1,FC=0.78,p=1.66e-15 SLC7A1,FC=0.62,p=1.32e-06 SLC7A1,FC=0.47,p=3.88e-12 SLC7A1,FC=0.31,p=0.022787909 UBL3,FC=-1.19,p=1.4e-42 UBL3,FC=-0.58,p=5.04e-08 USPL1,FC=-0.36,p=4.26e-12 ALOX5AP,FC=-1.33,p=4.53e-25 HSPH1,FC=0.47,p=0.000228941 HSPH1,FC=0.33,p=0.000157274

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      MPHOSPH8,FC=-3.68,p=2.6e-86 PSPC1,FC=0.27,p=2.07e-05 ZMYM5,FC=0.51,p=0.003321534 ZMYM5,FC=-0.94,p=1.81e-09 ZMYM2,FC=1.21,p=2.49e-18 ZMYM2,FC=2.60,p=5.57e-41 ZMYM2,FC=1.45,p=2.95e-25 GJA3,FC=4.43,p=1.37e-138 CRYL1,FC=-2.33,p=1.69e-53 IFT88,FC=-1.64,p=5.83e-26 XPO4,FC=3.80,p=7.75e-127 SAP18,FC=-2.55,p=2.82e-51 SAP18,FC=1.81,p=3.22e-41 SAP18,FC=-2.49,p=8.93e-86 MRP63,FC=-1.95,p=4.36e-86 MRP63,FC=0.58,p=5.25e-16 EFHA1,FC=-1.78,p=1.26e-82 FGF9,FC=-0.36,p=0.003412348 SGCG,FC=-4.55,p=1.15e-95 SACS,FC=3.93,p=4.07e-137 MIPEP,FC=2.09,p=9.34e-56 MIPEP,FC=-0.39,p=6.76e-08 PCOTH,FC=2.58,p=3.47e-75 PARP4,FC=1.21,p=4.07e-59 ATP12A,FC=-3.96,p=4.65e-81 RNF17,FC=-1.06,p=1.44e-16 RNF17,FC=-1.75,p=1.93e-24 CENPJ,FC=-1.66,p=7.35e-25 PABPC3,FC=-5.63,p=7.81e-140 MTMR6,FC=-1.56,p=1.39e-41 NUPL1,FC=-1.57,p=1.66e-16 ATP8A2,FC=-0.06,p=0.39521989 RNF6,FC=4.03,p=1.82e-68 RNF6,FC=-1.75,p=8.31e-27 CDK8,FC=-0.61,p=1.36e-14 WASF3,FC=-1.46,p=1.31e-50 GPR12,FC=-5.00,p=1.09e-106 GTF3A,FC=1.32,p=4.5e-51 GTF3A,FC=-6.72,p=1.19e-130 POLR1D,FC=2.15,p=5.7e-110 PDX1,FC=3.49,p=1.36e-73 PDX1,FC=0.62,p=0.000295084 CDX2,FC=2.43,p=1.77e-48 FLT3,FC=1.83,p=9.06e-26 FLT1,FC=1.42,p=1.5e-12 POMP,FC=-1.66,p=1.82e-15 SLC46A3,FC=-1.65,p=9.72e-56 KIAA0774,FC=2.80,p=3.8e-62 SLC7A1,FC=-3.34,p=1.24e-47 SLC7A1,FC=2.23,p=3.66e-52 SLC7A1,FC=-3.27,p=1.19e-94 SLC7A1,FC=3.81,p=4.46e-67 UBL3,FC=-1.11,p=1.78e-45 UBL3,FC=0.49,p=1.51e-08 USPL1,FC=-1.54,p=1.68e-32 ALOX5AP,FC=-4.85,p=5.57e-106 HSPH1,FC=-3.08,p=6.64e-46 HSPH1,FC=-2.78,p=1.4e-63


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DKFZp686A1627,FC=0.18,p=0.424040962 MPHOSPH8,FC=-0.29,p=0.002434805 MPHOSPH8,FC=-0.50,p=6.47e-08 MPHOSPH8,FC=-0.53,p=8.73e-15 MPHOSPH8,FC=1.01,p=0.000496784 MPHOSPH8,FC=0.11,p=0.546033258 BCL8,FC=-0.20,p=0.377180716 PSPC1,FC=0.05,p=0.854389983 PSPC1,FC=-0.09,p=0.201504595 PSPC1,FC=0.01,p=0.932977963 ZMYM5,FC=-0.00,p=0.969390064 ZMYM5,FC=0.01,p=0.922235352 ZMYM2,FC=0.21,p=0.266940401 ZMYM2,FC=0.38,p=3.61e-11 ZMYM2,FC=-0.68,p=3.57e-06 ZMYM2,FC=-0.14,p=0.538475801 GJA3,FC=-0.28,p=0.018557468 GJA3,FC=0.21,p=0.257507334 GJB2,FC=2.64,p=3.21e-24 GJB6,FC=2.49,p=1.41e-09 CRYL1,FC=-0.23,p=0.013624197 CRYL1,FC=-0.63,p=0.002745214 IFT88,FC=-0.29,p=9.16e-06 IL17D,FC=-1.11,p=4.86e-13 N6AMT2,FC=0.05,p=0.560093197 XPO4,FC=0.05,p=0.558576046 XPO4,FC=-0.50,p=2.57e-12 LATS2,FC=-1.29,p=7.76e-47 LATS2,FC=-0.99,p=1.61e-08 LATS2,FC=0.25,p=0.100311277 LATS2,FC=-1.06,p=3.82e-28 SAP18,FC=-0.37,p=6.41e-06 SAP18,FC=-1.18,p=7.44e-28 SAP18,FC=-1.02,p=8.27e-21 SKA3,FC=1.61,p=1.02e-28 MRP63,FC=0.17,p=0.075411854 MRP63,FC=0.13,p=0.036614308 MRP63,FC=-0.22,p=0.009442191 ZDHHC20,FC=1.15,p=1.57e-08 EFHA1,FC=-0.13,p=0.042974869 FGF9,FC=-0.91,p=5.79e-06 FLJ22536,FC=0.47,p=0.007048572 SGCG,FC=-3.76,p=4.7e-51 SACS,FC=-0.35,p=0.001241482 TNFRSF19,FC=-1.00,p=2.67e-09 TNFRSF19,FC=0.19,p=0.363288468 TNFRSF19,FC=0.27,p=0.146572951 MIPEP,FC=-0.18,p=0.152550963 MIPEP,FC=-0.22,p=0.010912578 PCOTH,FC=0.22,p=0.203815948 SPATA13,FC=-2.05,p=9.66e-19 C1QTNF9,FC=0.01,p=0.957599206 C1QTNF9,FC=0.07,p=0.678723259 PARP4,FC=-0.19,p=0.029627347 LOC374491,FC=0.59,p=0.018825948 ATP12A,FC=-0.04,p=0.839567734 RNF17,FC=0.46,p=0.05115726 RNF17,FC=-0.06,p=0.762946869 RNF17,FC=0.49,p=0.027637679 RNF17,FC=-0.15,p=0.458003819 CENPJ,FC=-0.14,p=0.183769468 CENPJ,FC=0.38,p=0.00011665 CENPJ,FC=-0.23,p=0.304427766 PABPC3,FC=0.60,p=4.09e-15 FAM123A,FC=-0.86,p=9.85e-05 FAM123A,FC=-0.22,p=0.1238202 MTMR6,FC=-1.02,p=4.8e-13 MTMR6,FC=-1.05,p=2.68e-19 NUPL1,FC=-0.26,p=0.006536607 NUPL1,FC=-0.89,p=1.7e-11 NUPL1,FC=-0.45,p=6.84e-05 NUPL1,FC=-1.63,p=8.68e-14 ATP8A2,FC=-1.83,p=4.27e-18 ATP8A2,FC=0.69,p=0.001181198 SHISA2,FC=-0.74,p=0.002286239 RNF6,FC=0.42,p=0.029761865 RNF6,FC=-0.49,p=5.39e-07 CDK8,FC=0.17,p=0.240478926 CDK8,FC=0.12,p=0.477482209 CDK8,FC=0.17,p=0.188233336 CDK8,FC=0.07,p=0.527906433 C21orf71,FC=-0.96,p=2.27e-11 WASF3,FC=-1.41,p=7.19e-31 GPR12,FC=0.56,p=0.000650066 USP12,FC=0.57,p=8.02e-05 RASL11A,FC=0.17,p=0.253673536 GTF3A,FC=0.25,p=0.000443356 GTF3A,FC=0.27,p=0.004469894 GTF3A,FC=0.32,p=6.72e-06 MTIF3,FC=0.08,p=0.65567856 MTIF3,FC=0.47,p=0.022719484 MTIF3,FC=-0.26,p=0.009623008 LNX2,FC=-1.07,p=4.2e-17 POLR1D,FC=0.17,p=0.061166077 POLR1D,FC=0.01,p=0.936718583 POLR1D,FC=-0.17,p=0.089690466 GSX1,FC=0.11,p=0.564047109 GSX1,FC=0.20,p=0.152686935 PDX1,FC=0.53,p=0.00390118 PDX1,FC=0.29,p=0.075611175 CDX2,FC=0.44,p=0.006455162 FLT3,FC=-0.23,p=0.162771004 PAN3,FC=0.29,p=0.077758273 PAN3,FC=-0.29,p=1.52e-05 PAN3,FC=-0.77,p=3.4e-08 FLT1,FC=-0.05,p=0.648670745 FLT1,FC=0.26,p=0.161378949 FLT1,FC=-0.47,p=6.24e-05 FLT1,FC=-0.63,p=7.88e-06 POMP,FC=-0.16,p=0.242650635 POMP,FC=0.02,p=0.766600937 SLC46A3,FC=-0.42,p=0.000680597 KIAA0774,FC=0.09,p=0.601408874 KIAA0774,FC=0.43,p=0.003846746 KIAA0774,FC=-0.03,p=0.907895637 SLC7A1,FC=0.25,p=0.143755017 SLC7A1,FC=0.71,p=2.05e-12 SLC7A1,FC=0.53,p=6.66e-06 SLC7A1,FC=1.00,p=1.1e-07 UBL3,FC=-1.05,p=1.18e-32 UBL3,FC=-0.96,p=1.52e-09 KATNAL1,FC=-0.28,p=0.045603592 KATNAL1,FC=-0.49,p=4.03e-08 HMGB1,FC=-1.10,p=7.34e-27 PLEKHA8,FC=0.25,p=0.164148453 USPL1,FC=-0.24,p=2.54e-05 USPL1,FC=-0.81,p=4.87e-05 ALOX5AP,FC=-1.69,p=4.34e-19 C13orf33,FC=-0.78,p=3.79e-08 C13orf33,FC=-0.38,p=0.015858434 C13orf26,FC=-0.05,p=0.805435371 HSPH1,FC=-0.08,p=0.362308436 HSPH1,FC=-0.12,p=0.459485704 B3GALTL,FC=-0.02,p=0.90506795 B3GALTL,FC=-0.11,p=0.151600898 B3GALTL,FC=-0.67,p=3.12e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DKFZp686A1627,FC=0.68,p=0.008527601 MPHOSPH8,FC=-0.54,p=1.16e-06 MPHOSPH8,FC=-0.79,p=8.38e-11 MPHOSPH8,FC=-0.68,p=6.5e-17 MPHOSPH8,FC=1.52,p=1.05e-07 MPHOSPH8,FC=-0.50,p=0.028357671 BCL8,FC=0.35,p=0.182879073 PSPC1,FC=-0.34,p=0.136222643 PSPC1,FC=-0.35,p=0.00010561 PSPC1,FC=-0.21,p=0.007447466 ZMYM5,FC=-0.12,p=0.225198418 ZMYM5,FC=-0.31,p=0.061538925 ZMYM2,FC=-0.54,p=0.000956129 ZMYM2,FC=0.20,p=0.001908112 ZMYM2,FC=-0.83,p=1.12e-09 ZMYM2,FC=-1.18,p=3.97e-07 GJA3,FC=-0.40,p=0.002419531 GJA3,FC=1.58,p=1.69e-14 GJB2,FC=4.91,p=1.93e-36 GJB6,FC=8.10,p=5.02e-38 CRYL1,FC=-0.33,p=0.000188313 CRYL1,FC=-0.33,p=0.146654905 IFT88,FC=-0.73,p=7.65e-20 IL17D,FC=-0.72,p=3.37e-06 N6AMT2,FC=-0.30,p=0.009783224 XPO4,FC=0.17,p=0.043529428 XPO4,FC=-0.62,p=2.89e-13 LATS2,FC=-1.65,p=2.35e-37 LATS2,FC=-1.62,p=1.8e-14 LATS2,FC=0.14,p=0.3839501 LATS2,FC=-1.47,p=1.35e-29 SAP18,FC=-0.66,p=5.56e-12 SAP18,FC=-1.62,p=1.18e-33 SAP18,FC=-1.49,p=7.09e-31 SKA3,FC=2.02,p=2.07e-27 MRP63,FC=0.13,p=0.195212311 MRP63,FC=-0.22,p=0.001812688 MRP63,FC=-0.38,p=6.92e-05 ZDHHC20,FC=1.42,p=2.25e-09 EFHA1,FC=-0.39,p=7.97e-07 FGF9,FC=-1.82,p=1.18e-15 FLJ22536,FC=0.49,p=0.002242583 SGCG,FC=-3.59,p=4.02e-34 SACS,FC=-0.55,p=8.77e-05 TNFRSF19,FC=-1.58,p=5.35e-20 TNFRSF19,FC=-0.06,p=0.775680891 TNFRSF19,FC=0.13,p=0.510673299 MIPEP,FC=-0.60,p=3.42e-05 MIPEP,FC=-0.43,p=7.41e-05 PCOTH,FC=0.35,p=0.100678128 SPATA13,FC=-3.38,p=5.73e-28 C1QTNF9,FC=-0.26,p=0.258758409 C1QTNF9,FC=0.50,p=0.006368802 PARP4,FC=-0.71,p=2.82e-18 LOC374491,FC=0.14,p=0.6218755 ATP12A,FC=0.72,p=0.000599306 RNF17,FC=1.19,p=2.17e-05 RNF17,FC=0.07,p=0.755375063 RNF17,FC=1.01,p=0.000147041 RNF17,FC=0.32,p=0.107897124 CENPJ,FC=-0.13,p=0.333700985 CENPJ,FC=0.60,p=8.32e-07 CENPJ,FC=-0.28,p=0.269558336 PABPC3,FC=0.88,p=4.23e-25 FAM123A,FC=-0.87,p=0.000618635 FAM123A,FC=0.05,p=0.794848876 MTMR6,FC=-1.64,p=2.22e-19 MTMR6,FC=-1.64,p=2.9e-25 NUPL1,FC=-0.92,p=4.05e-13 NUPL1,FC=-1.41,p=5.86e-16 NUPL1,FC=-0.51,p=2.64e-05 NUPL1,FC=-2.08,p=4.03e-21 ATP8A2,FC=-2.43,p=1.16e-23 ATP8A2,FC=1.15,p=6.7e-06 SHISA2,FC=-0.05,p=0.86612574 RNF6,FC=0.31,p=0.173060085 RNF6,FC=-0.69,p=1.88e-10 CDK8,FC=0.11,p=0.450469062 CDK8,FC=0.48,p=0.009723163 CDK8,FC=0.25,p=0.06997806 CDK8,FC=-0.11,p=0.348563469 C21orf71,FC=-1.17,p=5.33e-13 WASF3,FC=-1.42,p=3.78e-24 GPR12,FC=1.15,p=1.74e-08 USP12,FC=0.63,p=0.000142072 RASL11A,FC=0.40,p=0.013408513 GTF3A,FC=-0.14,p=0.085543319 GTF3A,FC=0.20,p=0.053787995 GTF3A,FC=-0.02,p=0.805136046 MTIF3,FC=0.25,p=0.223215905 MTIF3,FC=-0.24,p=0.223926597 MTIF3,FC=-0.57,p=4.09e-09 LNX2,FC=-1.45,p=2.69e-28 POLR1D,FC=0.40,p=0.000115747 POLR1D,FC=0.31,p=7.1e-05 POLR1D,FC=0.05,p=0.567287801 GSX1,FC=0.66,p=0.003131872 GSX1,FC=0.22,p=0.15509312 PDX1,FC=1.03,p=3.34e-07 PDX1,FC=0.22,p=0.192465684 CDX2,FC=0.10,p=0.423514091 FLT3,FC=-0.10,p=0.58306637 PAN3,FC=-0.34,p=0.00389076 PAN3,FC=-0.33,p=8.35e-07 PAN3,FC=-1.25,p=5.57e-18 FLT1,FC=-0.04,p=0.722997697 FLT1,FC=0.27,p=0.174020914 FLT1,FC=-0.49,p=8.99e-05 FLT1,FC=-1.07,p=2.19e-07 POMP,FC=-0.42,p=0.003545733 POMP,FC=-0.15,p=0.004479803 SLC46A3,FC=-1.68,p=6.6e-18 KIAA0774,FC=0.19,p=0.279424376 KIAA0774,FC=0.94,p=4.25e-08 KIAA0774,FC=-0.43,p=0.08997959 SLC7A1,FC=0.63,p=0.002323633 SLC7A1,FC=1.26,p=6.32e-24 SLC7A1,FC=1.09,p=1.38e-12 SLC7A1,FC=1.66,p=7.6e-13 UBL3,FC=-1.84,p=3.03e-51 UBL3,FC=-2.34,p=6.57e-30 KATNAL1,FC=-0.57,p=0.000329141 KATNAL1,FC=-0.82,p=4.48e-15 HMGB1,FC=-1.03,p=5.04e-20 PLEKHA8,FC=-0.31,p=0.120749098 USPL1,FC=-0.53,p=6.13e-15 USPL1,FC=-1.09,p=3.51e-06 ALOX5AP,FC=-2.80,p=1.13e-29 C13orf33,FC=-1.02,p=8.13e-08 C13orf33,FC=-0.05,p=0.770068489 C13orf26,FC=0.39,p=0.114259183 HSPH1,FC=0.22,p=0.021335314 HSPH1,FC=0.16,p=0.219513273 B3GALTL,FC=0.32,p=0.173838363 B3GALTL,FC=0.31,p=0.000818459 B3GALTL,FC=-0.68,p=5.85e-06


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GJB2,FC=0.79,p=0.137644225 LATS2,FC=-1.09,p=0.000123558 SAP18,FC=-1.11,p=0.000111469 SAP18,FC=0.14,p=0.533600055 SAP18,FC=-0.61,p=0.021941117 SACS,FC=1.10,p=0.00890897 MIPEP,FC=-0.22,p=0.360730478 MTMR6,FC=-0.52,p=0.064824947 ATP8A2,FC=0.27,p=0.455906041 RNF6,FC=0.13,p=0.687489466 CDK8,FC=0.01,p=0.95212067 WASF3,FC=-1.17,p=5.73e-05 GTF3A,FC=0.27,p=0.309238058 GTF3A,FC=0.99,p=0.05959525 GTF3A,FC=0.58,p=0.028760559 PDX1,FC=0.36,p=0.162952525 PDX1,FC=0.16,p=0.466452223 CDX2,FC=1.01,p=0.013914508 CDX2,FC=0.81,p=0.014234819 UBL3,FC=-0.84,p=0.080543878 UBL3,FC=-0.73,p=0.067432783 UBL3,FC=-1.00,p=0.032876808

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GJB2,FC=1.42,p=0.019367842 LATS2,FC=-1.09,p=0.000887945 SAP18,FC=-1.35,p=0.00095919 SAP18,FC=-0.02,p=0.931947117 SAP18,FC=-0.86,p=0.001707356 SACS,FC=1.35,p=0.000541777 MIPEP,FC=-0.34,p=0.20555597 MTMR6,FC=-0.67,p=0.026302507 ATP8A2,FC=0.32,p=0.575059356 RNF6,FC=0.29,p=0.424598126 CDK8,FC=0.02,p=0.948196371 WASF3,FC=-0.89,p=0.004070018 GTF3A,FC=-0.01,p=0.97831088 GTF3A,FC=0.64,p=0.160397453 GTF3A,FC=0.56,p=0.114712623 PDX1,FC=0.55,p=0.038959313 PDX1,FC=0.45,p=0.138049026 CDX2,FC=1.27,p=0.008555469 CDX2,FC=0.62,p=0.033466118 UBL3,FC=-0.99,p=0.004010564 UBL3,FC=-1.40,p=0.000465399 UBL3,FC=-1.43,p=0.000295788


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSPC1,FC=0.17,p=0.006318727 GJA3,FC=0.07,p=0.009226173 GJB2,FC=0.32,p=0.007417949 GJB6,FC=0.01,p=0.769775883 CRYL1,FC=-0.08,p=0.121522701 IL17D,FC=-0.11,p=1.15e-05 XPO4,FC=0.02,p=0.752185418 XPO4,FC=0.04,p=0.125831815 LATS2,FC=-0.24,p=7.85e-06 SAP18,FC=0.03,p=0.687538771 MRP63,FC=0.13,p=0.057152061 EFHA1,FC=0.19,p=0.002840078 FGF9,FC=-0.13,p=0.199532461 SGCG,FC=-0.31,p=0.000996739 SACS,FC=0.16,p=0.007722051 SACS,FC=0.05,p=0.351328258 SACS,FC=0.62,p=0.000298805 TNFRSF19,FC=-0.02,p=0.825200115 MIPEP,FC=-0.21,p=0.024909128 SPATA13,FC=-0.04,p=0.053560963 SPATA13,FC=-0.02,p=0.533976576 SPATA13,FC=-0.12,p=7.7e-06 PARP4,FC=0.11,p=0.068073852 ATP12A,FC=0.00,p=0.976140243 RNF17,FC=-0.02,p=0.745352265 CENPJ,FC=0.10,p=0.081632417 PABPC3,FC=0.17,p=0.072222383 MTMR6,FC=0.00,p=0.825588264 NUPL1,FC=0.07,p=0.283550856 ATP8A2,FC=-0.05,p=0.628002266 RNF6,FC=0.04,p=0.593643065 CDK8,FC=0.17,p=0.031959162 WASF3,FC=0.01,p=0.529130329 RASL11A,FC=-0.08,p=0.044094544 GTF3A,FC=0.29,p=0.000147546 MTIF3,FC=0.03,p=0.574630386 CDX2,FC=0.11,p=0.183046735 FLT3,FC=0.00,p=0.864452997 PAN3,FC=-0.09,p=0.066889473 SLC7A1,FC=0.03,p=0.042132101 UBL3,FC=-0.10,p=8.85e-05 KATNAL1,FC=-0.12,p=0.003941966 PLEKHA8,FC=-0.07,p=0.539670828 ALOX5AP,FC=-0.54,p=8.2e-10 HSPH1,FC=-0.01,p=0.889391717

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSPC1,FC=0.12,p=0.134779446 GJA3,FC=0.07,p=0.024614194 GJB2,FC=0.74,p=7.71e-06 GJB6,FC=0.26,p=0.008787985 CRYL1,FC=-0.18,p=0.004285338 IL17D,FC=-0.13,p=3.41e-09 XPO4,FC=0.05,p=0.438940803 XPO4,FC=0.05,p=0.056292953 LATS2,FC=-0.32,p=9.41e-08 SAP18,FC=0.09,p=0.201738117 MRP63,FC=0.12,p=0.059575794 EFHA1,FC=0.14,p=0.021185855 FGF9,FC=-0.31,p=2.42e-07 SGCG,FC=-0.36,p=6.27e-05 SACS,FC=0.19,p=0.00143859 SACS,FC=0.07,p=0.176696433 SACS,FC=0.66,p=2.91e-05 TNFRSF19,FC=-0.03,p=0.734370979 MIPEP,FC=-0.20,p=0.036883466 SPATA13,FC=-0.06,p=0.027540878 SPATA13,FC=-0.02,p=0.562925669 SPATA13,FC=-0.11,p=1.81e-07 PARP4,FC=-0.07,p=0.325963811 ATP12A,FC=0.07,p=0.27293125 RNF17,FC=-0.00,p=0.968633625 CENPJ,FC=0.15,p=0.045926374 PABPC3,FC=0.27,p=0.001245429 MTMR6,FC=0.01,p=0.653272154 NUPL1,FC=0.12,p=0.038871583 ATP8A2,FC=-0.15,p=0.004710362 RNF6,FC=0.18,p=0.018660336 CDK8,FC=0.19,p=0.014064381 WASF3,FC=0.00,p=0.841303247 RASL11A,FC=-0.11,p=0.000262722 GTF3A,FC=0.31,p=0.000377496 MTIF3,FC=0.02,p=0.727721298 CDX2,FC=0.13,p=0.014504933 FLT3,FC=-0.00,p=0.832290652 PAN3,FC=-0.12,p=0.016590499 SLC7A1,FC=0.02,p=0.065586928 UBL3,FC=-0.12,p=6.63e-05 KATNAL1,FC=-0.13,p=0.00628891 PLEKHA8,FC=-0.09,p=0.342874164 ALOX5AP,FC=-0.65,p=3.57e-15 HSPH1,FC=0.15,p=0.06694726


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

MPHOSPH8,FC=0.48,p=2.86e-13 PSPC1,FC=0.15,p=0.002001663 ZMYM5,FC=0.26,p=0.022247412 ZMYM5,FC=0.31,p=1.94e-05 ZMYM2,FC=0.90,p=1.42e-08 ZMYM2,FC=0.84,p=2.24e-08 ZMYM2,FC=0.42,p=3.43e-12 GJA3,FC=-0.14,p=0.069548568 CRYL1,FC=-0.58,p=1.55e-25 IFT88,FC=-0.69,p=1.48e-26 XPO4,FC=-0.01,p=0.892507364 SAP18,FC=-0.89,p=5.47e-22 SAP18,FC=-0.54,p=2.72e-10 SAP18,FC=0.17,p=0.000759536 MRP63,FC=-0.05,p=0.355226322 MRP63,FC=0.02,p=0.830387652 EFHA1,FC=0.10,p=0.060073841 FGF9,FC=-1.00,p=9.7e-09 SGCG,FC=-3.56,p=1.2e-59 SACS,FC=-0.15,p=0.075622621 MIPEP,FC=0.51,p=3.57e-05 MIPEP,FC=-0.29,p=6.03e-06 PCOTH,FC=-0.28,p=0.035894201 PARP4,FC=-0.22,p=0.000194677 ATP12A,FC=-0.61,p=8.38e-09 RNF17,FC=-0.79,p=5.73e-12 RNF17,FC=0.38,p=0.022441899 CENPJ,FC=0.24,p=0.013352232 PABPC3,FC=1.06,p=1.91e-41 MTMR6,FC=-0.24,p=0.00539331 NUPL1,FC=0.04,p=0.638513736 ATP8A2,FC=-0.83,p=4.54e-12 RNF6,FC=1.63,p=4.33e-13 RNF6,FC=-0.03,p=0.660332349 CDK8,FC=0.30,p=0.000221171 WASF3,FC=-1.51,p=2.32e-48 GPR12,FC=-0.63,p=1.63e-18 GTF3A,FC=0.17,p=0.000743676 GTF3A,FC=0.31,p=1.18e-07 POLR1D,FC=-0.26,p=0.000271715 PDX1,FC=-1.01,p=3.25e-13 PDX1,FC=0.52,p=4e-05 CDX2,FC=-0.71,p=3.83e-17 FLT3,FC=-0.51,p=1.28e-06 FLT1,FC=0.63,p=0.000323017 POMP,FC=0.02,p=0.677508727 SLC46A3,FC=-0.37,p=3.8e-05 KIAA0774,FC=-0.39,p=0.03344281 SLC7A1,FC=0.90,p=4.43e-16 SLC7A1,FC=0.74,p=7.17e-06 SLC7A1,FC=0.25,p=0.001160943 SLC7A1,FC=0.63,p=6.56e-06 UBL3,FC=-1.03,p=2.28e-30 UBL3,FC=-0.32,p=0.005623126 USPL1,FC=-0.48,p=3.73e-20 ALOX5AP,FC=-1.31,p=4.63e-18 HSPH1,FC=1.05,p=5.32e-13 HSPH1,FC=0.32,p=0.000136549

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-76K19, 2/50, 0.04 RP11-76K19, 1/50, 0.02 RP11-187L3, 3/50, 0.06 RP11-187L3, 4/50, 0.08 RP11-110K8, 1/50, 0.02 RP11-110K8, 7/50, 0.14 RP11-26A3, 3/50, 0.06 RP11-26A3, 10/50, 0.2 RP11-760M1, 3/50, 0.06 RP11-760M1, 9/50, 0.18 RP11-556N21, 5/50, 0.1 RP11-556N21, 14/50, 0.28 RP11-111G7, 2/50, 0.04 RP11-111G7, 17/50, 0.34 RP11-570F6, 2/50, 0.04 RP11-570F6, 15/50, 0.3 RP11-44J9, 0/50, 0 RP11-44J9, 7/50, 0.14 RP11-125I23, 11/50, 0.22 RP11-125I23, 3/50, 0.06 RP11-153M24, 1/50, 0.02 RP11-153M24, 8/50, 0.16 RP11-95G6, 2/50, 0.04 RP11-95G6, 4/50, 0.08 RP11-550P23, 7/50, 0.14 RP11-550P23, 2/50, 0.04 RP11-95N14, 2/50, 0.04 RP11-95N14, 9/50, 0.18

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=15983384

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D13S1316, 14/30, 47% Our unpublished data D13S175, 18/34, 53% Our unpublished data D13S1236, 9/18, 50% Our unpublished data D13S232, 24/37, 65% Our unpublished data D13S787, 13/33, 39% Our unpublished data D13S742, 13/19, 68% Our unpublished data D13S1304, 16/42, 38% Our unpublished data D13S243, 18/41, 44% D13S175, 10/15, 67% PMID=10987304 D13S217, 10/17, 59% D13S175, 10/24, 42% PMID=15900585 D13S175, 12/22, 55%

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