IGDB.NSCLC Chromosome View

Chromosome 13
13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

RB1, up, 51/106(48%) RB1, 3.79%, 11/290 RCBTB2, 0.53%, 1/189 CYSLTR2, 1.06%, 2/188 FNDC3A, 1.06%, 2/188

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      FOXO1,FC=-0.91,p=7.88e-17 MRPS31,FC=-0.23,p=0.170325703 ELF1,FC=-0.28,p=0.013572756 WBP4,FC=-0.25,p=0.001590486 KIAA0564,FC=0.01,p=0.9481049 AKAP11,FC=-0.38,p=7.81e-05 TNFSF11,FC=1.18,p=7.37e-07 TSC22D1,FC=-0.78,p=5.15e-08 NUFIP1,FC=0.53,p=0.007671925 GTF2F2,FC=0.08,p=0.700235666 TPT1,FC=-0.20,p=0.0185832 ZC3H13,FC=-0.67,p=0.001643255 CPB2,FC=-0.45,p=4.6e-05 LCP1,FC=-1.19,p=1.4e-13 LRCH1,FC=0.15,p=0.468871481 ESD,FC=-0.41,p=1.7e-06 HTR2A,FC=0.05,p=0.796997273 HTR2A,FC=0.12,p=0.281908858 HTR2A,FC=0.01,p=0.949765766 SUCLA2,FC=-0.23,p=0.040922883 ITM2B,FC=-0.50,p=1.81e-06 RB1,FC=-0.03,p=0.876337122 RB1,FC=0.14,p=0.532756245 RB1,FC=0.03,p=0.891273131 RB1,FC=-0.25,p=0.015242699 RB1,FC=-0.28,p=0.01884534 RB1,FC=-0.28,p=0.261932124 RCBTB2,FC=-0.52,p=8.78e-07 FNDC3A,FC=0.34,p=9.22e-05 KPNA3,FC=-0.25,p=0.0072701 C13orf1,FC=-0.67,p=2.6e-05 DLEU2,FC=0.79,p=0.000210286 TRIM13,FC=-0.27,p=0.003904323 DLEU1,FC=0.47,p=0.010560687 RNASEH2B,FC=-0.62,p=0.001492734 RNASEH2B,FC=-0.07,p=0.725782088 DHRS12,FC=0.22,p=0.001871184 DHRS12,FC=-0.19,p=0.404277826 ATP7B,FC=-0.08,p=0.748721891 UTP14C,FC=-0.08,p=0.297604976 NEK3,FC=-0.47,p=0.041937425 LECT1,FC=0.41,p=0.115766752

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      FOXO1,FC=-0.62,p=2.16e-06 MRPS31,FC=0.04,p=0.810788921 ELF1,FC=-0.20,p=0.196160219 WBP4,FC=-0.10,p=0.395020861 KIAA0564,FC=-0.12,p=0.468806124 AKAP11,FC=-0.29,p=0.020847607 TNFSF11,FC=1.44,p=2.47e-07 TSC22D1,FC=-0.91,p=2.42e-08 NUFIP1,FC=0.25,p=0.429272975 GTF2F2,FC=0.00,p=0.992212634 TPT1,FC=-0.51,p=2.32e-05 ZC3H13,FC=-0.94,p=0.003441911 CPB2,FC=-0.82,p=1.18e-06 LCP1,FC=-1.53,p=3.23e-13 LRCH1,FC=0.40,p=0.191229999 ESD,FC=-0.40,p=0.00032891 HTR2A,FC=-0.06,p=0.792532868 HTR2A,FC=0.25,p=0.044523144 HTR2A,FC=0.04,p=0.893496509 SUCLA2,FC=-0.17,p=0.230632447 ITM2B,FC=-0.39,p=0.014113243 RB1,FC=-0.04,p=0.872073199 RB1,FC=0.37,p=0.186325941 RB1,FC=0.26,p=0.327128017 RB1,FC=-0.19,p=0.277133961 RB1,FC=0.01,p=0.927356296 RB1,FC=0.12,p=0.73577628 RCBTB2,FC=-0.40,p=0.002093278 FNDC3A,FC=-0.26,p=0.030421787 KPNA3,FC=-0.06,p=0.645216868 C13orf1,FC=-0.49,p=0.016996466 DLEU2,FC=1.13,p=0.000260295 TRIM13,FC=-0.13,p=0.294912051 DLEU1,FC=1.38,p=2.93e-07 RNASEH2B,FC=-0.49,p=0.038559554 RNASEH2B,FC=0.03,p=0.885947201 DHRS12,FC=0.19,p=0.050132023 DHRS12,FC=-0.47,p=0.167039157 ATP7B,FC=-0.69,p=0.041810094 UTP14C,FC=-0.41,p=0.009309968 NEK3,FC=-0.96,p=0.001367151 LECT1,FC=0.76,p=0.014124893


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      FOXO1,FC=0.21,p=0.099183719 FOXO1,FC=-0.96,p=4.1e-37 MRPS31,FC=0.10,p=0.182141971 MRPS31,FC=-0.11,p=0.064216905 ELF1,FC=-0.13,p=0.083833587 ELF1,FC=0.03,p=0.774712981 WBP4,FC=-0.60,p=4.11e-29 WBP4,FC=0.11,p=0.224338609 WBP4,FC=-0.50,p=8.21e-13 MTRF1,FC=0.77,p=1.27e-07 NARG1L,FC=-0.17,p=0.023357121 C13orf15,FC=-2.63,p=1.61e-92 KIAA0564,FC=-0.30,p=3.95e-10 KIAA0564,FC=0.36,p=4.69e-05 AKAP11,FC=0.27,p=0.000266671 AKAP11,FC=-0.30,p=6.24e-07 TNFSF11,FC=1.37,p=2.26e-13 TNFSF11,FC=0.22,p=0.164972925 DNAJC15,FC=0.20,p=0.074586389 ENOX1,FC=-0.03,p=0.638378695 TSC22D1,FC=-1.04,p=7.4e-41 NUFIP1,FC=0.06,p=0.605025804 NUFIP1,FC=0.28,p=1.44e-05 KIAA1704,FC=0.17,p=0.173552603 GTF2F2,FC=0.31,p=0.002290232 TPT1,FC=0.27,p=4.7e-05 TPT1,FC=-0.16,p=2.26e-10 SLC25A30,FC=-0.04,p=0.747033985 ZC3H13,FC=-0.21,p=0.033889144 CPB2,FC=-2.92,p=4.76e-46 LCP1,FC=-0.59,p=7.36e-10 C13orf18,FC=-0.31,p=0.006036869 C13orf18,FC=-0.44,p=5.38e-05 LRCH1,FC=-0.09,p=0.478697435 ESD,FC=-0.27,p=0.000108932 ESD,FC=-0.52,p=3.95e-26 ESD,FC=-0.78,p=1.57e-29 HTR2A,FC=0.10,p=0.06086747 HTR2A,FC=-0.10,p=0.235215796 SUCLA2,FC=-0.18,p=0.031517851 NUDT15,FC=0.23,p=0.001904723 MED4,FC=-0.12,p=0.072997854 ITM2B,FC=-0.68,p=5.07e-13 ITM2B,FC=-0.34,p=1.69e-10 RB1,FC=-0.36,p=3.4e-06 RB1,FC=0.91,p=1.89e-10 LPAR6,FC=-0.58,p=7.47e-10 RCBTB2,FC=-0.82,p=3.46e-20 CYSLTR2,FC=-0.01,p=0.927687039 FNDC3A,FC=0.39,p=0.006080736 FNDC3A,FC=0.12,p=0.126657257 MLNR,FC=-0.02,p=0.824653698 CDADC1,FC=-0.35,p=0.004676294 CAB39L,FC=-0.65,p=2.82e-10 PHF11,FC=-0.59,p=1.63e-17 RCBTB1,FC=-0.13,p=0.12190472 KPNA3,FC=-0.38,p=1.55e-09 KPNA3,FC=-0.44,p=2.15e-12 C13orf1,FC=-0.64,p=4.98e-10 DLEU2,FC=0.20,p=0.042017466 TRIM13,FC=-0.25,p=1.08e-09 DLEU1,FC=0.30,p=7.64e-07 RNASEH2B,FC=-0.26,p=3.21e-08 RNASEH2B,FC=-0.10,p=0.085439375 GUCY1B2,FC=1.10,p=1.08e-08 INTS6,FC=0.18,p=0.007579396 INTS6,FC=-0.06,p=0.428390626 DHRS12,FC=-0.22,p=6.43e-05 DHRS12,FC=-0.33,p=0.014440199 CCDC70,FC=-0.65,p=1.62e-05 ATP7B,FC=-0.32,p=0.000264788 UTP14C,FC=-0.29,p=7.61e-09 NEK3,FC=-0.22,p=3.41e-05 NEK3,FC=-0.82,p=2.22e-18 CKAP2,FC=0.64,p=9.96e-16 LECT1,FC=0.25,p=0.072988496

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      FOXO1,FC=1.01,p=8.39e-22 FOXO1,FC=-1.37,p=5.17e-62 MRPS31,FC=3.29,p=4.83e-88 MRPS31,FC=0.24,p=0.141019771 ELF1,FC=-3.22,p=7.44e-43 ELF1,FC=-0.64,p=1.32e-13 WBP4,FC=0.40,p=3.09e-13 WBP4,FC=1.15,p=1.33e-38 WBP4,FC=1.52,p=7.03e-76 MTRF1,FC=2.32,p=1.03e-43 NARG1L,FC=-0.39,p=1.19e-09 C13orf15,FC=-4.52,p=2.5e-61 KIAA0564,FC=-1.49,p=1.16e-74 KIAA0564,FC=-0.76,p=1.56e-08 AKAP11,FC=1.30,p=6.72e-42 AKAP11,FC=0.11,p=0.058872217 TNFSF11,FC=4.59,p=9.8e-46 TNFSF11,FC=2.72,p=1.85e-41 DNAJC15,FC=-0.16,p=0.012315669 ENOX1,FC=1.49,p=9.05e-49 TSC22D1,FC=-8.37,p=1.87e-142 NUFIP1,FC=1.16,p=3.17e-19 NUFIP1,FC=2.05,p=1.59e-51 KIAA1704,FC=1.97,p=1.6e-30 GTF2F2,FC=2.68,p=5.91e-75 TPT1,FC=-6.92,p=3.3e-156 TPT1,FC=-10.76,p=1.97e-204 SLC25A30,FC=2.26,p=2.28e-50 ZC3H13,FC=2.62,p=4.8e-83 CPB2,FC=-2.37,p=4.75e-57 LCP1,FC=-4.21,p=2.74e-113 C13orf18,FC=0.11,p=0.401384556 C13orf18,FC=0.45,p=2.96e-08 LRCH1,FC=-0.14,p=0.305115418 ESD,FC=0.96,p=2e-25 ESD,FC=-5.66,p=1.14e-106 ESD,FC=-5.73,p=3.26e-72 HTR2A,FC=0.12,p=0.464536012 HTR2A,FC=4.89,p=1.91e-125 SUCLA2,FC=-2.91,p=9.82e-71 NUDT15,FC=0.68,p=1.9e-10 MED4,FC=-4.99,p=5.98e-161 ITM2B,FC=-3.30,p=3.61e-124 ITM2B,FC=-9.74,p=1.28e-191 RB1,FC=1.92,p=5.93e-72 RB1,FC=4.05,p=9.72e-81 LPAR6,FC=-0.45,p=5.07e-08 RCBTB2,FC=2.29,p=3.11e-95 CYSLTR2,FC=-3.61,p=5.44e-82 FNDC3A,FC=-3.48,p=1.84e-75 FNDC3A,FC=-1.32,p=2.2e-45 MLNR,FC=0.59,p=5.76e-05 CDADC1,FC=1.62,p=7.6e-35 CAB39L,FC=3.31,p=1.36e-85 PHF11,FC=-3.06,p=3.34e-106 RCBTB1,FC=2.12,p=1.98e-85 KPNA3,FC=-0.64,p=1.22e-10 KPNA3,FC=-3.87,p=3.17e-120 C13orf1,FC=-1.57,p=1.9e-30 DLEU2,FC=-3.89,p=3.47e-77 TRIM13,FC=-1.64,p=2e-51 DLEU1,FC=-2.40,p=3.88e-49 RNASEH2B,FC=1.49,p=2.12e-60 RNASEH2B,FC=-3.09,p=3.99e-72 GUCY1B2,FC=4.94,p=2.17e-106 INTS6,FC=1.64,p=3.55e-34 INTS6,FC=-0.73,p=1.93e-18 DHRS12,FC=-0.85,p=1.68e-13 DHRS12,FC=-0.30,p=0.049966653 CCDC70,FC=-2.21,p=4.25e-27 ATP7B,FC=0.85,p=5.23e-38 UTP14C,FC=-1.77,p=1.89e-73 NEK3,FC=2.97,p=2.92e-98 NEK3,FC=1.04,p=3.53e-41 CKAP2,FC=-3.28,p=5.17e-41 LECT1,FC=-1.20,p=5.07e-10


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      FOXO1,FC=0.03,p=0.874885019 FOXO1,FC=-1.05,p=8.18e-32 MRPS31,FC=0.21,p=0.268774155 MRPS31,FC=-0.47,p=6.63e-05 MRPS31,FC=-0.30,p=0.007552572 MRPS31,FC=0.03,p=0.890550631 SLC25A15,FC=1.46,p=1.87e-11 SUGT1L1,FC=0.17,p=0.235583176 SUGT1L1,FC=-0.01,p=0.952730624 ELF1,FC=-0.24,p=0.096151268 ELF1,FC=-0.64,p=1.33e-07 WBP4,FC=-0.61,p=2.93e-08 WBP4,FC=-0.29,p=0.001109353 WBP4,FC=-0.80,p=1.06e-22 KBTBD6,FC=0.18,p=0.062379478 KBTBD6,FC=-0.46,p=0.005841958 KBTBD7,FC=0.12,p=0.218731923 KBTBD7,FC=-0.36,p=0.001800572 MTRF1,FC=-0.17,p=0.165115887 MTRF1,FC=-0.22,p=0.179534863 MTRF1,FC=-0.31,p=0.157533459 NARG1L,FC=-0.11,p=0.104545195 NARG1L,FC=-0.55,p=0.000217396 C13orf15,FC=-1.59,p=4.67e-10 C13orf15,FC=-2.49,p=1.35e-51 KIAA0564,FC=-0.04,p=0.700580271 KIAA0564,FC=-0.03,p=0.710838736 KIAA0564,FC=-0.01,p=0.963242527 DGKH,FC=0.33,p=0.016836693 AKAP11,FC=-0.15,p=0.039780447 AKAP11,FC=-0.45,p=0.000636585 TNFSF11,FC=1.64,p=9.62e-12 TNFSF11,FC=1.08,p=1.99e-06 C13orf30,FC=-2.30,p=4e-15 EPSTI1,FC=0.33,p=0.0088508 DNAJC15,FC=0.52,p=4.48e-05 DNAJC15,FC=-0.24,p=0.035433341 ENOX1,FC=0.02,p=0.864508103 CCDC122,FC=0.01,p=0.960736241 CCDC122,FC=0.25,p=0.127642141 C13orf31,FC=0.40,p=0.003025155 C13orf31,FC=-0.62,p=0.001972206 LOC121838,FC=-0.03,p=0.88442243 SERP2,FC=0.20,p=0.284705796 SERP2,FC=-0.72,p=0.000350952 SERP2,FC=-0.53,p=0.007848638 SERP2,FC=-0.80,p=4.51e-09 TSC22D1,FC=-0.70,p=3.87e-16 TSC22D1,FC=0.45,p=4e-05 TSC22D1,FC=-1.39,p=3.35e-05 NUFIP1,FC=-0.06,p=0.527768435 NUFIP1,FC=0.12,p=0.273080336 KIAA1704,FC=-0.47,p=5.31e-06 KIAA1704,FC=-0.07,p=0.519161501 GTF2F2,FC=0.05,p=0.589629228 KCTD4,FC=0.47,p=0.065569506 KCTD4,FC=0.19,p=0.291445619 TPT1,FC=-0.12,p=1.4e-05 TPT1,FC=0.04,p=0.244607382 LOC100190939,FC=-0.18,p=0.033006886 LOC100190939,FC=0.12,p=0.424312658 SLC25A30,FC=0.02,p=0.90115859 SLC25A30,FC=0.55,p=0.007852372 COG3,FC=0.30,p=0.132000875 COG3,FC=-0.10,p=0.163047109 COG3,FC=-0.24,p=0.054663116 SPERT,FC=0.15,p=0.346654025 SPERT,FC=0.37,p=0.011759821 SIAH3,FC=-0.24,p=0.285837003 ZC3H13,FC=0.48,p=0.000762001 CPB2,FC=-3.69,p=4.42e-33 LCP1,FC=-0.82,p=2.25e-09 C13orf18,FC=-0.72,p=1.2e-06 C13orf18,FC=-0.62,p=6e-07 LRCH1,FC=0.40,p=0.013755802 LRCH1,FC=0.12,p=0.573096155 LRCH1,FC=-0.35,p=0.074952561 ESD,FC=-0.57,p=7.75e-12 ESD,FC=-0.03,p=0.860471601 ESD,FC=0.08,p=0.411651252 ESD,FC=-0.37,p=6.9e-09 ESD,FC=-0.49,p=9.88e-14 HTR2A,FC=-0.05,p=0.627891013 HTR2A,FC=0.48,p=0.001387269 SUCLA2,FC=-0.17,p=0.044115292 NUDT15,FC=0.06,p=0.539905576 MED4,FC=-0.13,p=0.154573574 MED4,FC=-0.38,p=0.000265067 ITM2B,FC=-0.41,p=8.62e-10 ITM2B,FC=-0.68,p=3.71e-14 RB1,FC=0.02,p=0.897844292 RB1,FC=-0.11,p=0.209845937 LPAR6,FC=-0.57,p=6.07e-08 RCBTB2,FC=-0.79,p=1.66e-11 CYSLTR2,FC=0.56,p=0.001456603 FNDC3A,FC=0.23,p=0.224841958 FNDC3A,FC=-0.40,p=0.10608863 FNDC3A,FC=-0.20,p=0.013315052 MLNR,FC=-0.09,p=0.633792804 CDADC1,FC=-0.32,p=0.018666641 CDADC1,FC=-0.36,p=0.000284208 CDADC1,FC=-0.28,p=0.068919456 CDADC1,FC=-0.19,p=0.017027232 CAB39L,FC=-0.70,p=2.68e-16 CAB39L,FC=-1.34,p=1.84e-12 CAB39L,FC=-0.99,p=3.62e-10 SETDB2,FC=-0.36,p=0.000360389 SETDB2,FC=-0.77,p=0.001646314 SETDB2,FC=-0.49,p=0.000242054 SETDB2,FC=0.06,p=0.6463152 SETDB2,FC=-0.85,p=0.001110413 PHF11,FC=-0.55,p=8.38e-16 PHF11,FC=-0.24,p=0.049185564 PHF11,FC=0.84,p=8.49e-05 RCBTB1,FC=0.02,p=0.827815533 RCBTB1,FC=0.12,p=0.439986696 ARL11,FC=-1.19,p=3.79e-08 ARL11,FC=0.01,p=0.967381929 EBPL,FC=0.32,p=7.05e-05 KPNA3,FC=-0.28,p=0.008443108 KPNA3,FC=-0.60,p=0.000134059 KPNA3,FC=-0.20,p=9.84e-05 C13orf1,FC=-0.05,p=0.726710707 C13orf1,FC=-0.83,p=3.89e-19 DLEU2,FC=0.36,p=0.02852342 DLEU2,FC=0.04,p=0.832726795 DLEU2,FC=-0.64,p=3.08e-05 DLEU2,FC=0.42,p=4.56e-07 DLEU2,FC=-0.72,p=0.000169635 DLEU2,FC=-0.29,p=0.256996041 DLEU2,FC=0.41,p=0.03753153 DLEU2,FC=-0.26,p=0.267112883 TRIM13,FC=-0.28,p=4.9e-06 TRIM13,FC=-0.79,p=0.002517122 TRIM13,FC=0.03,p=0.73185285 KCNRG,FC=-1.30,p=2.39e-11 KCNRG,FC=-0.99,p=2.1e-08 DLEU1,FC=0.77,p=7.11e-14 RNASEH2B,FC=0.29,p=0.002397658 RNASEH2B,FC=-0.35,p=0.000442369 RNASEH2B,FC=0.81,p=1.36e-05 GUCY1B2,FC=0.59,p=0.007745662 FAM124A,FC=-1.97,p=9.37e-21 FAM124A,FC=-0.14,p=0.4181255 FAM124A,FC=0.34,p=0.027743845 FAM124A,FC=0.02,p=0.8905932 FAM124A,FC=-0.64,p=0.006007564 INTS6,FC=-0.07,p=0.416117154 INTS6,FC=0.02,p=0.909348552 INTS6,FC=-0.09,p=0.276538754 INTS6,FC=-0.13,p=0.101252288 WDFY2,FC=-1.15,p=3.98e-08 WDFY2,FC=-0.27,p=0.003605749 WDFY2,FC=-0.54,p=0.000266925 DHRS12,FC=-0.19,p=0.272896772 DHRS12,FC=-0.30,p=0.000139887 CCDC70,FC=0.02,p=0.905883333 ATP7B,FC=0.47,p=0.00136984 ATP7B,FC=0.02,p=0.92743773 UTP14C,FC=-0.17,p=0.005450779 NEK3,FC=-0.84,p=7.28e-17 NEK3,FC=-0.69,p=3.7e-05 NEK3,FC=0.14,p=0.286373044 VPS36,FC=-0.49,p=9.88e-11 VPS36,FC=0.08,p=0.682127219 CKAP2,FC=1.05,p=2.77e-08 CKAP2,FC=0.85,p=9.91e-17 HNRNPA1L2,FC=-0.42,p=0.033354685 SUGT1,FC=0.33,p=0.001779222 SUGT1,FC=0.23,p=0.0003838 SUGT1,FC=0.22,p=0.000170385 LECT1,FC=0.52,p=0.023441559

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      FOXO1,FC=1.04,p=4e-11 FOXO1,FC=-0.61,p=3.49e-12 MRPS31,FC=-0.29,p=0.208475646 MRPS31,FC=-0.84,p=1.92e-09 MRPS31,FC=-0.59,p=7.78e-07 MRPS31,FC=0.31,p=0.11519483 SLC25A15,FC=0.90,p=8.41e-05 SUGT1L1,FC=-0.32,p=0.038671739 SUGT1L1,FC=0.01,p=0.945018393 ELF1,FC=-0.77,p=1.37e-06 ELF1,FC=-1.21,p=4.15e-08 WBP4,FC=-0.99,p=4.28e-13 WBP4,FC=-0.42,p=3.67e-06 WBP4,FC=-0.89,p=4.43e-22 KBTBD6,FC=0.50,p=7.25e-06 KBTBD6,FC=-0.54,p=0.005175084 KBTBD7,FC=-0.19,p=0.0766519 KBTBD7,FC=-0.62,p=6.55e-07 MTRF1,FC=-0.80,p=4.07e-07 MTRF1,FC=-1.23,p=2.65e-08 MTRF1,FC=-0.97,p=0.001053972 NARG1L,FC=-0.07,p=0.366756968 NARG1L,FC=-0.86,p=8.43e-07 C13orf15,FC=-2.66,p=5.47e-25 C13orf15,FC=-3.33,p=3.48e-41 KIAA0564,FC=-0.39,p=0.000855685 KIAA0564,FC=0.03,p=0.724220066 KIAA0564,FC=-0.73,p=0.00368052 DGKH,FC=0.91,p=2.47e-09 AKAP11,FC=-0.38,p=5.63e-06 AKAP11,FC=-0.89,p=1.27e-11 TNFSF11,FC=1.24,p=7.69e-08 TNFSF11,FC=1.35,p=7.47e-10 C13orf30,FC=-3.25,p=7.9e-20 EPSTI1,FC=-0.04,p=0.780206463 DNAJC15,FC=-0.68,p=1.84e-05 DNAJC15,FC=-1.15,p=2.04e-16 ENOX1,FC=0.14,p=0.162879169 CCDC122,FC=-0.05,p=0.82152767 CCDC122,FC=-0.30,p=0.154020536 C13orf31,FC=0.74,p=1.18e-06 C13orf31,FC=-0.72,p=0.001268313 LOC121838,FC=-0.79,p=0.001666902 SERP2,FC=0.41,p=0.070416342 SERP2,FC=-0.98,p=1.92e-05 SERP2,FC=-0.36,p=0.085964607 SERP2,FC=-0.59,p=6.45e-05 TSC22D1,FC=-1.04,p=5.33e-20 TSC22D1,FC=0.14,p=0.192993553 TSC22D1,FC=-2.29,p=1.66e-11 NUFIP1,FC=-0.08,p=0.375430507 NUFIP1,FC=0.03,p=0.834131422 KIAA1704,FC=-0.98,p=1.89e-15 KIAA1704,FC=-0.37,p=0.00583062 GTF2F2,FC=0.30,p=0.004747127 KCTD4,FC=0.47,p=0.136861073 KCTD4,FC=0.56,p=0.005991961 TPT1,FC=-0.27,p=2.57e-10 TPT1,FC=-0.11,p=0.009278647 LOC100190939,FC=-0.27,p=0.034387108 LOC100190939,FC=0.07,p=0.700244136 SLC25A30,FC=-0.46,p=0.009111686 SLC25A30,FC=0.71,p=0.004092283 COG3,FC=-0.59,p=0.019055636 COG3,FC=-0.26,p=0.001269444 COG3,FC=-0.21,p=0.138226442 SPERT,FC=0.08,p=0.672474969 SPERT,FC=1.14,p=1.07e-13 SIAH3,FC=0.29,p=0.291110302 ZC3H13,FC=1.01,p=3.71e-08 CPB2,FC=-4.64,p=4.04e-39 LCP1,FC=-1.32,p=7.84e-14 C13orf18,FC=-1.13,p=2.16e-12 C13orf18,FC=-0.96,p=3.44e-09 LRCH1,FC=-0.05,p=0.787381612 LRCH1,FC=0.29,p=0.228227011 LRCH1,FC=-0.59,p=0.008600932 ESD,FC=-0.58,p=1.71e-09 ESD,FC=0.22,p=0.30261682 ESD,FC=0.11,p=0.286961928 ESD,FC=-0.39,p=2e-11 ESD,FC=-0.69,p=2.72e-17 HTR2A,FC=0.12,p=0.281501057 HTR2A,FC=0.47,p=0.004971293 SUCLA2,FC=-0.22,p=0.008935198 NUDT15,FC=0.44,p=5.91e-06 MED4,FC=-0.27,p=0.009911562 MED4,FC=-0.43,p=0.001483141 ITM2B,FC=-0.41,p=2.3e-08 ITM2B,FC=-0.93,p=8.58e-17 RB1,FC=0.14,p=0.4905852 RB1,FC=-0.11,p=0.333575214 LPAR6,FC=-0.36,p=0.006664586 RCBTB2,FC=-1.14,p=5.12e-20 CYSLTR2,FC=0.76,p=0.000345559 FNDC3A,FC=-0.63,p=0.005853879 FNDC3A,FC=-1.59,p=1.84e-10 FNDC3A,FC=-1.07,p=8.38e-22 MLNR,FC=-0.46,p=0.029270095 CDADC1,FC=-0.43,p=0.004489067 CDADC1,FC=-0.99,p=9.07e-13 CDADC1,FC=-0.43,p=0.036958255 CDADC1,FC=-0.46,p=1.94e-07 CAB39L,FC=-0.51,p=6.04e-08 CAB39L,FC=-1.84,p=3.86e-17 CAB39L,FC=-1.48,p=1.18e-15 SETDB2,FC=-0.98,p=4.08e-11 SETDB2,FC=-1.58,p=9.01e-07 SETDB2,FC=-1.12,p=5.63e-09 SETDB2,FC=-0.24,p=0.192082835 SETDB2,FC=-1.59,p=1.06e-06 PHF11,FC=-1.09,p=2.05e-28 PHF11,FC=-0.39,p=0.000894667 PHF11,FC=0.36,p=0.162415846 RCBTB1,FC=-0.08,p=0.411382666 RCBTB1,FC=0.60,p=0.000638162 ARL11,FC=-1.83,p=4.69e-11 ARL11,FC=-0.18,p=0.491878984 EBPL,FC=0.45,p=3.76e-06 KPNA3,FC=-0.12,p=0.194561805 KPNA3,FC=-1.10,p=4e-09 KPNA3,FC=-0.11,p=0.041650846 C13orf1,FC=-0.00,p=0.985408371 C13orf1,FC=-0.84,p=1.26e-16 DLEU2,FC=1.02,p=9e-07 DLEU2,FC=-0.66,p=0.001586694 DLEU2,FC=-1.39,p=2.49e-14 DLEU2,FC=0.57,p=1.67e-07 DLEU2,FC=-1.32,p=3.72e-13 DLEU2,FC=-1.06,p=0.001126894 DLEU2,FC=0.28,p=0.202111241 DLEU2,FC=-1.24,p=7.47e-06 TRIM13,FC=-0.32,p=5.39e-07 TRIM13,FC=-1.76,p=7.5e-10 TRIM13,FC=-0.12,p=0.239025662 KCNRG,FC=-1.67,p=4.74e-13 KCNRG,FC=-1.34,p=5.75e-11 DLEU1,FC=1.20,p=6.88e-26 RNASEH2B,FC=0.55,p=7.83e-09 RNASEH2B,FC=-0.57,p=9.09e-08 RNASEH2B,FC=1.35,p=6.61e-10 GUCY1B2,FC=-0.18,p=0.439387725 FAM124A,FC=-2.32,p=3.88e-19 FAM124A,FC=-0.05,p=0.797098386 FAM124A,FC=0.45,p=0.009107755 FAM124A,FC=0.36,p=0.027721961 FAM124A,FC=-0.38,p=0.153545098 INTS6,FC=-0.30,p=0.010291928 INTS6,FC=0.63,p=1.69e-05 INTS6,FC=-0.13,p=0.18481029 INTS6,FC=-0.30,p=0.000727853 WDFY2,FC=-1.19,p=4.25e-07 WDFY2,FC=0.32,p=0.007637123 WDFY2,FC=-0.13,p=0.307673571 DHRS12,FC=-0.52,p=0.012875429 DHRS12,FC=-0.64,p=3.2e-16 CCDC70,FC=-0.05,p=0.825913525 ATP7B,FC=0.34,p=0.022140098 ATP7B,FC=-0.86,p=0.001357879 UTP14C,FC=-0.46,p=6.91e-09 NEK3,FC=-1.26,p=4.8e-20 NEK3,FC=-0.96,p=1.51e-10 NEK3,FC=-0.17,p=0.200323337 VPS36,FC=-0.71,p=3.16e-17 VPS36,FC=0.50,p=0.029931296 CKAP2,FC=1.65,p=1.93e-11 CKAP2,FC=1.53,p=7.91e-30 HNRNPA1L2,FC=-0.87,p=0.0003822 SUGT1,FC=-0.23,p=0.056470652 SUGT1,FC=0.05,p=0.505341364 SUGT1,FC=0.04,p=0.57215768 LECT1,FC=0.55,p=0.004578065


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      MRPS31,FC=-0.59,p=0.084358609 ELF1,FC=0.21,p=0.426198456 WBP4,FC=-0.31,p=0.152721471 KIAA0564,FC=0.21,p=0.601563528 KIAA0564,FC=-0.65,p=0.155410496 KIAA0564,FC=-0.54,p=0.084426939 AKAP11,FC=-0.13,p=0.719051831 AKAP11,FC=0.05,p=0.89804523 AKAP11,FC=-0.79,p=0.026929875 TNFSF11,FC=0.54,p=0.41640885 NUFIP1,FC=0.54,p=0.11568341 GTF2F2,FC=0.41,p=0.063164666 TPT1,FC=-0.29,p=0.313614645 TPT1,FC=0.63,p=0.006617476 TPT1,FC=0.17,p=0.557993339 CPB2,FC=-0.72,p=0.39504561 CPB2,FC=-1.50,p=0.171027144 LCP1,FC=-1.52,p=0.000264793 LCP1,FC=-1.46,p=0.00048769 ESD,FC=-0.36,p=0.229226493 HTR2A,FC=0.74,p=0.013476956 ITM2B,FC=-0.82,p=0.05308923 ITM2B,FC=-0.94,p=0.001902834 RB1,FC=0.16,p=0.456563156 KPNA3,FC=0.10,p=0.740353822 DLEU2,FC=1.09,p=0.001414873 DLEU1,FC=0.52,p=0.071232128 GUCY1B2,FC=1.12,p=0.020865131 ATP7B,FC=0.37,p=0.308221926 CKAP2,FC=1.30,p=0.000266424

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      MRPS31,FC=-0.50,p=0.489998776 ELF1,FC=0.52,p=0.112040692 WBP4,FC=-0.34,p=0.265528848 KIAA0564,FC=0.64,p=0.091523884 KIAA0564,FC=-0.04,p=0.898133924 KIAA0564,FC=-0.20,p=0.519185404 AKAP11,FC=-0.53,p=0.507607411 AKAP11,FC=0.10,p=0.813961075 AKAP11,FC=-0.69,p=0.167328018 TNFSF11,FC=0.48,p=0.431538445 NUFIP1,FC=0.79,p=0.00453302 GTF2F2,FC=0.71,p=0.004619886 TPT1,FC=-0.83,p=0.013037296 TPT1,FC=0.29,p=0.388323639 TPT1,FC=-0.10,p=0.749158232 CPB2,FC=-1.08,p=0.063317036 CPB2,FC=-1.86,p=0.010700538 LCP1,FC=-2.41,p=5.66e-05 LCP1,FC=-2.33,p=0.000151405 ESD,FC=-0.95,p=0.003073191 HTR2A,FC=0.44,p=0.125093186 ITM2B,FC=-0.08,p=0.877315425 ITM2B,FC=-0.50,p=0.192360407 RB1,FC=0.03,p=0.921381724 KPNA3,FC=0.22,p=0.472055255 DLEU2,FC=1.97,p=2.78e-06 DLEU1,FC=1.01,p=0.033979212 GUCY1B2,FC=0.61,p=0.292947219 ATP7B,FC=-0.34,p=0.624795119 CKAP2,FC=2.23,p=0.000499108


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      MRPS31,FC=0.09,p=0.089619237 ELF1,FC=-0.11,p=0.016660394 ELF1,FC=-0.05,p=0.129236084 WBP4,FC=-0.12,p=0.004305125 KBTBD6,FC=0.01,p=0.89293894 KBTBD7,FC=-0.24,p=0.000805247 KBTBD7,FC=-0.00,p=0.983550109 MTRF1,FC=0.13,p=0.050000004 KIAA0564,FC=0.09,p=0.036326629 KIAA0564,FC=0.08,p=0.063751401 DGKH,FC=0.05,p=0.141379615 AKAP11,FC=-0.02,p=0.71044053 TNFSF11,FC=0.11,p=0.073125523 EPSTI1,FC=-0.15,p=0.30862561 KIAA1704,FC=0.16,p=0.006257804 GTF2F2,FC=0.20,p=0.026504596 KCTD4,FC=0.06,p=0.277108739 SLC25A30,FC=-0.00,p=0.971965073 SLC25A30,FC=-0.01,p=0.847487581 COG3,FC=0.01,p=0.839686349 CPB2,FC=-0.40,p=0.001619116 LCP1,FC=-0.30,p=0.001634383 C13orf18,FC=-0.19,p=0.012590625 LRCH1,FC=0.09,p=0.034431061 LRCH1,FC=-0.02,p=0.40773111 LRCH1,FC=0.08,p=0.514466372 ESD,FC=-0.11,p=0.040441171 ESD,FC=-0.07,p=0.00308931 HTR2A,FC=0.02,p=0.477183032 SUCLA2,FC=0.01,p=0.815709418 NUDT15,FC=0.12,p=0.243650857 ITM2B,FC=-0.18,p=0.005925788 RB1,FC=-0.13,p=0.124778439 CYSLTR2,FC=0.00,p=0.956456109 CYSLTR2,FC=0.00,p=0.970246062 MLNR,FC=0.05,p=0.083859603 CDADC1,FC=-0.20,p=0.002900624 CAB39L,FC=-0.07,p=0.011472668 SETDB2,FC=0.05,p=0.120495988 PHF11,FC=-0.06,p=0.404252684 RCBTB1,FC=0.01,p=0.875408601 ARL11,FC=-0.05,p=0.114919878 EBPL,FC=0.09,p=0.271328847 KPNA3,FC=-0.05,p=0.359606815 DLEU2,FC=0.06,p=0.000762476 DLEU1,FC=0.01,p=0.523170112 GUCY1B2,FC=0.14,p=0.002708148 WDFY2,FC=0.01,p=0.750694939 WDFY2,FC=0.11,p=0.209159383 ATP7B,FC=0.02,p=0.496573038 NEK3,FC=-0.02,p=0.714712944 CKAP2,FC=0.14,p=0.071659842 SUGT1,FC=0.09,p=0.099597101 LECT1,FC=0.01,p=0.907940087

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      MRPS31,FC=0.14,p=0.021407927 ELF1,FC=-0.10,p=0.078859281 ELF1,FC=-0.04,p=0.310551141 WBP4,FC=-0.09,p=0.073529836 KBTBD6,FC=0.03,p=0.608351839 KBTBD7,FC=-0.20,p=0.022913853 KBTBD7,FC=-0.00,p=0.929486588 MTRF1,FC=0.08,p=0.304453016 KIAA0564,FC=0.10,p=0.015907494 KIAA0564,FC=0.11,p=0.026067714 DGKH,FC=0.09,p=0.041738965 AKAP11,FC=-0.06,p=0.28237693 TNFSF11,FC=0.10,p=0.1306975 EPSTI1,FC=-0.26,p=0.041667943 KIAA1704,FC=0.19,p=0.004662438 GTF2F2,FC=0.33,p=0.000158777 KCTD4,FC=0.03,p=0.620428559 SLC25A30,FC=-0.01,p=0.461861586 SLC25A30,FC=-0.05,p=0.379326181 COG3,FC=-0.01,p=0.678319868 CPB2,FC=-0.42,p=0.000673306 LCP1,FC=-0.38,p=0.00011763 C13orf18,FC=-0.23,p=0.00064089 LRCH1,FC=0.07,p=0.112341592 LRCH1,FC=-0.03,p=0.275539088 LRCH1,FC=0.09,p=0.533460039 ESD,FC=-0.09,p=0.129912335 ESD,FC=-0.08,p=0.002033465 HTR2A,FC=0.01,p=0.554921212 SUCLA2,FC=0.01,p=0.739323166 NUDT15,FC=0.37,p=0.003492365 ITM2B,FC=-0.07,p=0.458453086 RB1,FC=-0.04,p=0.67704467 CYSLTR2,FC=-0.01,p=0.865755303 CYSLTR2,FC=-0.01,p=0.872498343 MLNR,FC=0.04,p=0.105332942 CDADC1,FC=-0.24,p=0.011530906 CAB39L,FC=-0.08,p=0.000110717 SETDB2,FC=0.03,p=0.314286812 PHF11,FC=-0.12,p=0.099517514 RCBTB1,FC=0.01,p=0.900171168 ARL11,FC=-0.06,p=0.080630256 EBPL,FC=0.32,p=0.000128244 KPNA3,FC=0.02,p=0.727265844 DLEU2,FC=0.08,p=0.002427884 DLEU1,FC=0.05,p=0.062498944 GUCY1B2,FC=0.10,p=0.128129074 WDFY2,FC=0.05,p=0.592905868 WDFY2,FC=0.16,p=0.058295924 ATP7B,FC=0.01,p=0.808901099 NEK3,FC=-0.10,p=0.069854266 CKAP2,FC=0.34,p=4.96e-06 SUGT1,FC=0.14,p=0.067832558 LECT1,FC=-0.02,p=0.549439541


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-15a,Mean=-1.24

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-15a,Mean=-1.63

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-621,Mean=0.01 hsa-mir-15a,Mean=0.04

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-621,Mean=0.01 hsa-mir-15a,Mean=0.10

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

FOXO1,FC=0.53,p=2.81e-07 FOXO1,FC=-0.92,p=7.36e-28 MRPS31,FC=0.31,p=5.71e-05 MRPS31,FC=0.07,p=0.240816993 ELF1,FC=0.23,p=0.000677363 ELF1,FC=0.02,p=0.842185687 WBP4,FC=-0.71,p=4.16e-36 WBP4,FC=0.45,p=9.33e-08 WBP4,FC=-0.38,p=3.09e-09 MTRF1,FC=1.18,p=2.32e-19 NARG1L,FC=-0.18,p=0.00655739 C13orf15,FC=-2.21,p=8.19e-51 KIAA0564,FC=-0.36,p=1.47e-11 KIAA0564,FC=0.54,p=3.85e-08 AKAP11,FC=-0.00,p=0.975005451 AKAP11,FC=-0.36,p=2.55e-10 TNFSF11,FC=1.37,p=4.14e-09 TNFSF11,FC=-0.16,p=0.388687573 DNAJC15,FC=0.40,p=0.000885454 ENOX1,FC=-0.21,p=0.005938907 TSC22D1,FC=-0.75,p=1.49e-21 NUFIP1,FC=0.25,p=0.028255936 NUFIP1,FC=0.23,p=0.000395845 KIAA1704,FC=0.60,p=4.27e-06 GTF2F2,FC=0.67,p=2.81e-09 TPT1,FC=0.25,p=0.000117884 TPT1,FC=-0.06,p=0.010809656 SLC25A30,FC=-0.02,p=0.887735758 ZC3H13,FC=-0.60,p=2.38e-06 CPB2,FC=-2.80,p=1.06e-27 LCP1,FC=-0.63,p=4.07e-11 C13orf18,FC=-0.36,p=0.002185232 C13orf18,FC=-0.44,p=0.000311943 LRCH1,FC=-0.15,p=0.267037158 ESD,FC=-0.18,p=0.013865902 ESD,FC=-0.41,p=2.52e-16 ESD,FC=-0.46,p=8.8e-09 HTR2A,FC=0.04,p=0.578940922 HTR2A,FC=-0.33,p=0.001901157 SUCLA2,FC=-0.01,p=0.918910183 NUDT15,FC=0.26,p=0.002522524 MED4,FC=0.05,p=0.487739477 ITM2B,FC=-0.45,p=1.02e-05 ITM2B,FC=-0.27,p=2.16e-07 RB1,FC=-0.26,p=0.001968482 RB1,FC=1.65,p=4.85e-27 LPAR6,FC=-0.43,p=2.17e-07 RCBTB2,FC=-0.78,p=1.85e-20 CYSLTR2,FC=-0.06,p=0.634013633 FNDC3A,FC=0.69,p=6.1e-06 FNDC3A,FC=0.26,p=0.000138861 MLNR,FC=-0.58,p=0.000200586 CDADC1,FC=-0.19,p=0.09877352 CAB39L,FC=-0.67,p=7.73e-09 PHF11,FC=-0.57,p=2.66e-18 RCBTB1,FC=0.08,p=0.314871732 KPNA3,FC=-0.08,p=0.265619444 KPNA3,FC=-0.27,p=6.22e-06 C13orf1,FC=-0.44,p=6.24e-05 DLEU2,FC=0.12,p=0.168414169 TRIM13,FC=-0.22,p=6.28e-07 DLEU1,FC=0.17,p=0.015336296 RNASEH2B,FC=-0.37,p=2.05e-11 RNASEH2B,FC=-0.35,p=0.000129655 GUCY1B2,FC=1.28,p=2.32e-08 INTS6,FC=0.47,p=1.62e-09 INTS6,FC=0.26,p=0.002846367 DHRS12,FC=-0.35,p=1.64e-10 DHRS12,FC=-0.50,p=0.00111894 CCDC70,FC=-1.31,p=7.48e-13 ATP7B,FC=-0.52,p=2.52e-09 UTP14C,FC=-0.27,p=6.17e-07 NEK3,FC=-0.24,p=0.000282714 NEK3,FC=-1.10,p=5.74e-36 CKAP2,FC=0.51,p=2.1e-10 LECT1,FC=-0.27,p=0.074330031

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-125A7, 5/50, 0.1 RP11-125A7, 9/50, 0.18 RP11-117I13, 2/50, 0.04 RP11-117I13, 11/50, 0.22 RP11-168P13, 4/50, 0.08 RP11-168P13, 14/50, 0.28 RP11-442J21, 5/50, 0.1 RP11-442J21, 4/50, 0.08 RP11-351K3, 4/50, 0.08 RP11-351K3, 13/50, 0.26 RP11-247M1, 4/50, 0.08 RP11-247M1, 9/50, 0.18 RP11-408L13, 7/50, 0.14 RP11-408L13, 18/50, 0.36 RP11-174I10, 3/50, 0.06 RP11-174I10, 9/50, 0.18 RP11-305D15, 1/50, 0.02 RP11-305D15, 11/50, 0.22 RP11-185C18, 4/50, 0.08 RP11-185C18, 3/50, 0.06 RP11-40A8, 2/50, 0.04 RP11-40A8, 8/50, 0.16 RP11-327P2, 1/50, 0.02 RP11-327P2, 8/50, 0.16 RP11-431O22, 4/50, 0.08 RP11-431O22, 11/50, 0.22

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D13S325, 12/21, 57% Our unpublished data D13S153, 11/42, 26% D13S263, 10/18, 56% PMID=10987304 D13S153, 9/17, 53% D13S153, 10/28, 36% PMID=15900585 D13S153, 12/21, 57%

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