IGDB.NSCLC Chromosome View

Chromosome 13
13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=0.41,p=0.115766752 PCDH8,FC=0.32,p=0.251945347 OLFM4,FC=0.73,p=0.034764872 PCDH17,FC=-0.94,p=3.42e-12 TDRD3,FC=-1.50,p=5.35e-10 PCDH9,FC=0.12,p=0.505283395 PCDH9,FC=0.22,p=0.197129168 PCDH9,FC=-2.10,p=1.21e-16 DACH1,FC=-0.45,p=0.038977677

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=0.76,p=0.014124893 PCDH8,FC=0.30,p=0.461063703 OLFM4,FC=0.90,p=0.020703609 PCDH17,FC=-0.90,p=2.1e-08 TDRD3,FC=-1.51,p=2.33e-08 PCDH9,FC=0.01,p=0.984110099 PCDH9,FC=-0.01,p=0.975122219 PCDH9,FC=-2.50,p=9.61e-13 DACH1,FC=-1.06,p=0.000101779


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=0.25,p=0.072988496 PCDH8,FC=0.32,p=0.129409979 OLFM4,FC=1.27,p=1.85e-05 PCDH17,FC=-1.87,p=1.78e-80 DIAPH3,FC=0.02,p=0.886861807 TDRD3,FC=-0.81,p=1.88e-09 TDRD3,FC=-0.28,p=0.000681531 OR7E156P,FC=-0.36,p=4.12e-08 PCDH9,FC=-1.06,p=5.67e-12 PCDH9,FC=-1.93,p=6.2e-30 PCDH9,FC=-0.77,p=2.55e-07 KLHL1,FC=-0.28,p=0.00276548 ATXN8OS,FC=-0.20,p=0.157756571 DACH1,FC=-1.98,p=1.38e-31 DACH1,FC=-2.19,p=5.76e-62

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=-1.20,p=5.07e-10 PCDH8,FC=2.83,p=2.49e-35 OLFM4,FC=10.35,p=5.52e-156 PCDH17,FC=-3.82,p=1.3e-95 DIAPH3,FC=0.89,p=5.19e-09 TDRD3,FC=-0.05,p=0.603139534 TDRD3,FC=-0.49,p=2e-07 OR7E156P,FC=0.40,p=2.6e-09 PCDH9,FC=1.57,p=1.25e-20 PCDH9,FC=-0.98,p=1.2e-12 PCDH9,FC=3.20,p=1.86e-74 KLHL1,FC=-0.91,p=1.8e-07 ATXN8OS,FC=-0.41,p=0.00533849 DACH1,FC=-0.78,p=5.34e-05 DACH1,FC=-2.75,p=1.52e-43


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=0.52,p=0.023441559 PCDH8,FC=0.87,p=0.00272842 OLFM4,FC=1.12,p=0.003068455 SPIN3,FC=0.48,p=0.000187695 PCDH17,FC=-1.59,p=1.43e-29 PCDH17,FC=-1.54,p=2.15e-31 PCDH17,FC=-1.72,p=4.75e-30 DIAPH3,FC=0.09,p=0.3541601 DIAPH3,FC=0.52,p=0.022078498 DIAPH3,FC=1.11,p=1.3e-06 DIAPH3,FC=0.54,p=0.000319358 TDRD3,FC=-0.95,p=1.65e-17 TDRD3,FC=-0.88,p=3.05e-13 TDRD3,FC=-0.43,p=1.36e-05 PCDH20,FC=-1.35,p=2.54e-07 OR7E156P,FC=0.38,p=0.000470831 PCDH9,FC=-0.57,p=0.005396035 PCDH9,FC=-2.56,p=1.16e-40 PCDH9,FC=-1.41,p=7.26e-10 KLHL1,FC=0.07,p=0.761297166 KLHL1,FC=-0.07,p=0.697094283 ATXN8OS,FC=0.03,p=0.896326802 DACH1,FC=-2.34,p=1e-23 DACH1,FC=-2.38,p=4.47e-43 DACH1,FC=-3.09,p=1.88e-40 DACH1,FC=-1.59,p=2.32e-18

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=0.55,p=0.004578065 PCDH8,FC=0.69,p=0.021676169 OLFM4,FC=1.51,p=3.63e-05 SPIN3,FC=0.14,p=0.413312831 PCDH17,FC=-1.51,p=3.97e-20 PCDH17,FC=-1.75,p=2.59e-21 PCDH17,FC=-1.95,p=6.44e-22 DIAPH3,FC=0.44,p=2.74e-06 DIAPH3,FC=1.06,p=4.03e-05 DIAPH3,FC=1.08,p=1.84e-05 DIAPH3,FC=0.82,p=1.66e-05 TDRD3,FC=-0.96,p=2.57e-12 TDRD3,FC=-1.25,p=2.68e-14 TDRD3,FC=-0.40,p=0.000779258 PCDH20,FC=-2.68,p=7.37e-22 OR7E156P,FC=0.86,p=4.02e-11 PCDH9,FC=-1.05,p=6.2e-06 PCDH9,FC=-2.83,p=4.96e-34 PCDH9,FC=-1.79,p=3.87e-13 KLHL1,FC=-0.27,p=0.271754251 KLHL1,FC=0.53,p=0.008170241 ATXN8OS,FC=0.32,p=0.18832877 DACH1,FC=-2.29,p=2.27e-18 DACH1,FC=-2.11,p=6.66e-29 DACH1,FC=-2.58,p=5.25e-25 DACH1,FC=-1.50,p=5.47e-15


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PCDH8,FC=-0.11,p=0.77210316 PCDH9,FC=-0.90,p=0.018679356 PCDH9,FC=-0.46,p=0.374102806

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PCDH8,FC=-0.52,p=0.165088318 PCDH9,FC=-0.43,p=0.311624605 PCDH9,FC=-1.05,p=0.115520153


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=0.01,p=0.907940087 PCDH8,FC=0.06,p=0.23235959 OLFM4,FC=0.07,p=0.513321837 OLFM4,FC=-0.02,p=0.555011378 PCDH17,FC=-0.56,p=1.31e-08 DIAPH3,FC=0.19,p=0.000456589 TDRD3,FC=-0.01,p=0.785758555 PCDH9,FC=0.03,p=0.194921061 KLHL1,FC=0.04,p=0.267547801 DACH1,FC=-0.40,p=2.79e-06 DACH1,FC=-0.08,p=0.010490263 DACH1,FC=-0.17,p=0.000203765

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      LECT1,FC=-0.02,p=0.549439541 PCDH8,FC=0.06,p=0.057493938 OLFM4,FC=0.06,p=0.470258731 OLFM4,FC=-0.02,p=0.595830043 PCDH17,FC=-0.58,p=6.47e-07 DIAPH3,FC=0.20,p=0.000389162 TDRD3,FC=-0.08,p=0.01735116 PCDH9,FC=0.03,p=0.330818468 KLHL1,FC=0.06,p=0.103038381 DACH1,FC=-0.38,p=7.3e-06 DACH1,FC=-0.07,p=0.020144084 DACH1,FC=-0.18,p=2.64e-06


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

LECT1,FC=-0.27,p=0.074330031 PCDH8,FC=0.33,p=0.12082963 OLFM4,FC=1.30,p=7.28e-05 PCDH17,FC=-1.72,p=3.23e-49 DIAPH3,FC=-0.03,p=0.873400897 TDRD3,FC=-0.80,p=1.61e-08 TDRD3,FC=-0.20,p=0.023932793 OR7E156P,FC=-0.55,p=1.08e-15 PCDH9,FC=-0.80,p=9.92e-06 PCDH9,FC=-1.66,p=4.33e-21 PCDH9,FC=-1.29,p=8.62e-12 KLHL1,FC=-1.02,p=2.75e-11 ATXN8OS,FC=-0.57,p=0.000369431 DACH1,FC=-0.78,p=0.000250261 DACH1,FC=-2.02,p=2.85e-50

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-431O22, 4/50, 0.08 RP11-431O22, 11/50, 0.22 RP11-384G23, 1/50, 0.02 RP11-384G23, 17/50, 0.34 RP11-200F15, 5/50, 0.1 RP11-200F15, 8/50, 0.16 RP11-478B20, 2/50, 0.04 RP11-478B20, 9/50, 0.18 RP11-516G5, 2/50, 0.04 RP11-516G5, 8/50, 0.16 RP11-279F15, 7/50, 0.14 RP11-279F15, 6/50, 0.12 RP11-538C21, 2/50, 0.04 RP11-538C21, 11/50, 0.22 RP11-524F1, 1/50, 0.02 RP11-524F1, 18/50, 0.36 RP11-359P14, 7/50, 0.14 RP11-359P14, 13/50, 0.26 RP11-310K10, 2/50, 0.04 RP11-310K10, 13/50, 0.26 RP11-234O23, 4/50, 0.08 RP11-234O23, 13/50, 0.26 RP11-67L17, 2/50, 0.04 RP11-67L17, 10/50, 0.2 RP11-129M14, 0/50, 0 RP11-129M14, 11/50, 0.22 RP11-424E21, 1/50, 0.02 RP11-424E21, 15/50, 0.3 RP11-10M21, 3/50, 0.06 RP11-10M21, 18/50, 0.36 RP11-521L15, 5/50, 0.1 RP11-521L15, 13/50, 0.26 RP11-370A2, 6/50, 0.12 RP11-370A2, 9/50, 0.18 RP11-436I5, 1/50, 0.02 RP11-436I5, 10/50, 0.2 RP11-184L18, 0/50, 0 RP11-184L18, 8/50, 0.16 RP11-393H6, 2/50, 0.04 RP11-393H6, 21/50, 0.42

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12367789 PMID=12599234 PMID=14581340 PMID=15093586 PMID=15983384 PMID=16322280

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D13S1320, 9/9, 100%

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