IGDB.NSCLC Chromosome View

Chromosome 13
13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DIS3,FC=-0.15,p=0.438800259 PIBF1,FC=-0.08,p=0.424430365 KLF5,FC=0.41,p=0.007965036 KLF12,FC=-0.04,p=0.84284808 KLF12,FC=0.07,p=0.711325405 TBC1D4,FC=-0.36,p=0.007352566 UCHL3,FC=0.21,p=0.115728752 LMO7,FC=-1.79,p=7.36e-15 KCTD12,FC=-1.11,p=7.99e-15 BTF3L1,FC=-0.02,p=0.862619281 CLN5,FC=-0.74,p=7.29e-05 MYCBP2,FC=-0.19,p=0.016220666 SCEL,FC=-1.04,p=4.81e-07 EDNRB,FC=-2.56,p=3.55e-23

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DIS3,FC=-0.84,p=0.012841385 PIBF1,FC=-0.42,p=0.002979272 KLF5,FC=1.41,p=2.95e-09 KLF12,FC=0.53,p=0.106490878 KLF12,FC=-0.01,p=0.978211978 TBC1D4,FC=-0.41,p=0.003411028 UCHL3,FC=0.32,p=0.072120656 LMO7,FC=-2.76,p=2.13e-14 KCTD12,FC=-1.45,p=6.19e-15 BTF3L1,FC=-0.07,p=0.745922341 CLN5,FC=-1.16,p=1.33e-05 MYCBP2,FC=-0.08,p=0.409995573 SCEL,FC=-2.35,p=9.85e-17 EDNRB,FC=-2.78,p=4.5e-14


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C13orf34,FC=0.50,p=3e-15 DIS3,FC=-0.13,p=0.224495287 DIS3,FC=-0.23,p=2.1e-05 PIBF1,FC=0.03,p=0.790924432 KLF5,FC=0.38,p=0.001006724 KLF5,FC=0.57,p=1.64e-06 KLF12,FC=-0.06,p=0.460295172 KLF12,FC=0.35,p=0.007924828 KLF12,FC=0.10,p=0.126251078 KLF12,FC=-0.25,p=0.073327881 TBC1D4,FC=-0.54,p=2.79e-15 TBC1D4,FC=-0.79,p=3.14e-22 UCHL3,FC=0.63,p=3.08e-15 LMO7,FC=-1.43,p=1.79e-37 KCTD12,FC=-1.33,p=1.6e-38 KCTD12,FC=-0.96,p=2.41e-17 BTF3L1,FC=0.01,p=0.958665208 CLN5,FC=-0.42,p=3.42e-08 CLN5,FC=-0.07,p=0.190833671 CLN5,FC=0.13,p=0.036979436 MYCBP2,FC=-0.51,p=9.35e-15 MYCBP2,FC=-0.54,p=2.78e-17 SCEL,FC=-1.74,p=9.26e-12 EDNRB,FC=-3.12,p=1.05e-140 EDNRB,FC=-3.38,p=7.44e-88 EDNRB,FC=-2.77,p=8.35e-112

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C13orf34,FC=1.05,p=6.76e-34 DIS3,FC=2.72,p=1.46e-86 DIS3,FC=-0.70,p=3.74e-14 PIBF1,FC=2.41,p=8.44e-96 KLF5,FC=2.19,p=6.66e-77 KLF5,FC=-0.36,p=1.17e-05 KLF12,FC=5.09,p=1.25e-134 KLF12,FC=0.37,p=0.026236715 KLF12,FC=-2.32,p=3.04e-44 KLF12,FC=0.96,p=2.24e-15 TBC1D4,FC=0.85,p=3.1e-21 TBC1D4,FC=-1.08,p=1.88e-26 UCHL3,FC=0.93,p=1.04e-26 LMO7,FC=0.89,p=5.07e-13 KCTD12,FC=-0.22,p=0.30812478 KCTD12,FC=-0.43,p=5.87e-05 BTF3L1,FC=3.82,p=1.29e-65 CLN5,FC=1.65,p=5.83e-65 CLN5,FC=-0.23,p=8.83e-05 CLN5,FC=-3.64,p=3.63e-63 MYCBP2,FC=-0.81,p=6.27e-32 MYCBP2,FC=-1.04,p=2.01e-13 SCEL,FC=-3.37,p=1.53e-84 EDNRB,FC=-3.03,p=1.06e-90 EDNRB,FC=-1.17,p=1.1e-28 EDNRB,FC=-3.66,p=1.48e-109


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C13orf37,FC=0.27,p=0.002058017 C13orf34,FC=1.01,p=4.29e-20 DIS3,FC=-0.15,p=0.027335523 DIS3,FC=-0.83,p=5.86e-11 DIS3,FC=-0.37,p=1.48e-06 DIS3,FC=-0.17,p=0.096855577 PIBF1,FC=-0.44,p=1.04e-06 KLF5,FC=0.22,p=0.096819808 KLF5,FC=0.49,p=0.001895165 KLF12,FC=0.57,p=0.003074151 KLF12,FC=-0.05,p=0.715303015 KLF12,FC=-0.79,p=0.000113867 KLF12,FC=0.26,p=0.172957843 KLF12,FC=0.18,p=0.136212312 KLF12,FC=-0.57,p=0.002273757 KLF12,FC=-0.41,p=7.36e-06 KLF12,FC=0.13,p=0.536182742 KLF12,FC=-0.66,p=0.000235339 KLF12,FC=-0.34,p=0.089525749 KLF12,FC=-0.17,p=0.322552373 TBC1D4,FC=-0.46,p=2.85e-07 TBC1D4,FC=-0.47,p=5.51e-07 COMMD6,FC=0.36,p=0.028446262 COMMD6,FC=-0.34,p=8.7e-05 UCHL3,FC=0.13,p=0.275366514 LMO7,FC=-1.03,p=3.51e-10 LMO7,FC=-0.21,p=0.254289091 LMO7,FC=-1.58,p=1.37e-26 LMO7,FC=-1.23,p=5.21e-18 KCTD12,FC=-1.21,p=3.54e-23 KCTD12,FC=-1.02,p=3.58e-16 BTF3L1,FC=0.16,p=0.480416107 CLN5,FC=-0.14,p=0.11145176 CLN5,FC=-0.31,p=0.000635999 CLN5,FC=-0.69,p=1.08e-08 FBXL3,FC=-0.36,p=0.004300358 FBXL3,FC=-0.89,p=4.14e-25 MYCBP2,FC=-0.19,p=0.058922903 MYCBP2,FC=-0.68,p=1.37e-12 MYCBP2,FC=-0.48,p=6.23e-09 SCEL,FC=-0.24,p=0.396235286 SCEL,FC=-1.13,p=2.63e-06 SCEL,FC=-1.78,p=3.36e-12 SCEL,FC=-1.97,p=1.95e-11 SLAIN1,FC=-0.36,p=0.028816875 EDNRB,FC=-2.88,p=1.47e-63 EDNRB,FC=-3.65,p=8.47e-58 EDNRB,FC=-2.71,p=1.44e-46

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C13orf37,FC=0.48,p=4.02e-07 C13orf34,FC=1.39,p=3.9e-27 DIS3,FC=-0.15,p=0.025876558 DIS3,FC=-1.25,p=1.61e-17 DIS3,FC=-0.23,p=0.00897611 DIS3,FC=-0.09,p=0.397506413 PIBF1,FC=-0.68,p=4.52e-10 KLF5,FC=1.33,p=2.15e-15 KLF5,FC=1.89,p=5.55e-20 KLF12,FC=0.98,p=4.14e-05 KLF12,FC=0.18,p=0.066464529 KLF12,FC=-0.90,p=1.35e-05 KLF12,FC=0.40,p=0.046859048 KLF12,FC=0.91,p=2.23e-09 KLF12,FC=-0.56,p=0.004077665 KLF12,FC=-0.26,p=0.002523349 KLF12,FC=0.21,p=0.354080943 KLF12,FC=-0.91,p=1.07e-06 KLF12,FC=0.09,p=0.670056054 KLF12,FC=-0.55,p=0.004762434 TBC1D4,FC=-0.28,p=0.002686058 TBC1D4,FC=-0.13,p=0.181289487 COMMD6,FC=0.07,p=0.691779698 COMMD6,FC=-0.49,p=8.57e-09 UCHL3,FC=0.14,p=0.267566629 LMO7,FC=-2.11,p=3.6e-28 LMO7,FC=-1.14,p=2.55e-08 LMO7,FC=-2.84,p=3.96e-44 LMO7,FC=-2.48,p=5.63e-35 KCTD12,FC=-1.85,p=3.28e-22 KCTD12,FC=-1.69,p=3.6e-19 BTF3L1,FC=0.33,p=0.171109218 CLN5,FC=-0.38,p=7.22e-05 CLN5,FC=-0.80,p=7.63e-13 CLN5,FC=-1.07,p=3.5e-16 FBXL3,FC=-0.77,p=3.21e-08 FBXL3,FC=-1.24,p=1.83e-29 MYCBP2,FC=0.00,p=0.972737518 MYCBP2,FC=-0.63,p=6.65e-09 MYCBP2,FC=-0.41,p=3.82e-05 SCEL,FC=-0.44,p=0.166542852 SCEL,FC=-2.09,p=6.24e-18 SCEL,FC=-3.46,p=6.3e-25 SCEL,FC=-4.16,p=3.44e-24 SLAIN1,FC=-1.96,p=4.13e-21 EDNRB,FC=-3.69,p=9.94e-47 EDNRB,FC=-4.88,p=2.27e-40 EDNRB,FC=-3.26,p=1.92e-39


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      KLF12,FC=0.21,p=0.435862022 UCHL3,FC=0.78,p=0.000839811 LMO7,FC=-1.39,p=0.006389593 LMO7,FC=-1.62,p=0.000596881 CLN5,FC=-0.72,p=0.004960818 SCEL,FC=-1.47,p=0.006624344 EDNRB,FC=-2.39,p=2.61e-10 EDNRB,FC=-2.64,p=3.11e-08

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      KLF12,FC=0.80,p=0.049504342 UCHL3,FC=1.33,p=5.76e-06 LMO7,FC=-2.99,p=9.76e-07 LMO7,FC=-3.18,p=1.15e-06 CLN5,FC=-0.58,p=0.05870529 SCEL,FC=-2.68,p=3.36e-06 EDNRB,FC=-3.13,p=4.97e-10 EDNRB,FC=-3.29,p=2.31e-10


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      KLF5,FC=0.03,p=0.786577074 KLF12,FC=-0.03,p=0.074227688 TBC1D4,FC=-0.12,p=0.263040495 COMMD6,FC=-0.06,p=0.055698307 UCHL3,FC=0.15,p=0.104218342 LMO7,FC=-0.17,p=0.019525695 KCTD12,FC=-0.39,p=0.000176619 CLN5,FC=-0.27,p=2.28e-05 FBXL3,FC=-0.10,p=0.053319923 MYCBP2,FC=0.11,p=0.03192455 SCEL,FC=-0.18,p=0.085281118 EDNRB,FC=-0.66,p=4.63e-17

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      KLF5,FC=0.48,p=4.99e-05 KLF12,FC=-0.05,p=0.050400408 TBC1D4,FC=0.02,p=0.801814684 COMMD6,FC=-0.08,p=0.017210416 UCHL3,FC=0.36,p=3.02e-05 LMO7,FC=-0.36,p=6.78e-05 KCTD12,FC=-0.57,p=6.33e-07 CLN5,FC=-0.32,p=3.96e-05 FBXL3,FC=-0.11,p=0.04523107 MYCBP2,FC=0.18,p=0.005805932 SCEL,FC=-0.36,p=0.000348823 EDNRB,FC=-0.70,p=2.79e-15


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

C13orf34,FC=0.28,p=9.54e-05 DIS3,FC=-0.08,p=0.321037292 DIS3,FC=-0.32,p=1.01e-07 PIBF1,FC=0.39,p=1.39e-06 KLF5,FC=0.84,p=1.81e-10 KLF5,FC=1.06,p=1.84e-17 KLF12,FC=0.05,p=0.542750336 KLF12,FC=0.71,p=1.91e-05 KLF12,FC=-0.20,p=0.033009604 KLF12,FC=0.06,p=0.648104144 TBC1D4,FC=-0.53,p=1.9e-15 TBC1D4,FC=-0.72,p=5.59e-20 UCHL3,FC=0.50,p=1.41e-09 LMO7,FC=-1.43,p=5.78e-29 KCTD12,FC=-0.96,p=1.62e-16 KCTD12,FC=-0.21,p=0.108100944 BTF3L1,FC=0.15,p=0.479760126 CLN5,FC=-0.38,p=0.000274121 CLN5,FC=0.07,p=0.214806287 CLN5,FC=0.25,p=0.004723251 MYCBP2,FC=-0.27,p=5e-05 MYCBP2,FC=-0.49,p=6.49e-13 SCEL,FC=-1.29,p=1.35e-08 EDNRB,FC=-2.94,p=6.06e-80 EDNRB,FC=-3.13,p=1.16e-52 EDNRB,FC=-2.74,p=1.05e-66

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-309H15, 6/50, 0.12 RP11-309H15, 4/50, 0.08 RP11-552M6, 4/50, 0.08 RP11-552M6, 9/50, 0.18 RP11-394J19, 2/50, 0.04 RP11-394J19, 19/50, 0.38 RP11-332E3, 4/50, 0.08 RP11-332E3, 13/50, 0.26 RP11-226E21, 1/50, 0.02 RP11-226E21, 7/50, 0.14 RP11-388E20, 5/50, 0.1 RP11-388E20, 22/50, 0.44

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D13S800, 12/21, 57% PMID=10987304 D13S156, 9/17, 53% RB310, 3/12, 25% PMID=15900585 RB310, 8/16, 50%

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