IGDB.NSCLC Chromosome View

Chromosome 13
13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.20,p=0.361588469 SPRY2,FC=-0.62,p=1.79e-06 SLITRK5,FC=-0.19,p=0.40333204 GPC5,FC=0.03,p=0.919969172

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.09,p=0.753272745 SPRY2,FC=-1.06,p=2.16e-06 SLITRK5,FC=-0.19,p=0.517742412 GPC5,FC=0.01,p=0.974652643


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.13,p=0.10484235 POU4F1,FC=0.72,p=0.00012895 RNF219,FC=-0.04,p=0.48095002 RBM26,FC=0.40,p=5.26e-07 RBM26,FC=-0.04,p=0.634586022 SPRY2,FC=-0.58,p=1.03e-09 SLITRK5,FC=0.23,p=0.141679616 GPC5,FC=-0.93,p=2.28e-08

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=1.06,p=0.001285424 POU4F1,FC=4.05,p=8.57e-80 RNF219,FC=1.58,p=1.61e-74 RBM26,FC=1.34,p=1.9e-54 RBM26,FC=0.31,p=0.000548712 SPRY2,FC=-0.67,p=9.52e-13 SLITRK5,FC=0.79,p=7.96e-21 GPC5,FC=1.97,p=2.96e-35


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.99,p=3.06e-07 POU4F1,FC=0.92,p=0.000122675 RNF219,FC=0.47,p=0.007264956 RNF219,FC=-0.10,p=0.252252507 RBM26,FC=0.35,p=0.001116919 RBM26,FC=0.14,p=0.047133501 RBM26,FC=0.19,p=0.309565913 NDFIP2,FC=0.11,p=0.284225193 NDFIP2,FC=0.54,p=8.57e-07 SPRY2,FC=-0.81,p=6.17e-11 SLITRK1,FC=0.61,p=0.001688111 SLITRK6,FC=0.21,p=0.487147321 SLITRK6,FC=-0.03,p=0.914943088 SLITRK6,FC=0.50,p=0.050448862 SLITRK5,FC=-0.40,p=0.095035944 GPC5,FC=-0.11,p=0.553306792 GPC5,FC=0.38,p=0.089029982 GPC5,FC=-1.89,p=4.96e-15 GPC6,FC=0.48,p=0.016477512 GPC6,FC=1.23,p=3.76e-05 GPC6,FC=0.71,p=0.000902846 GPC6,FC=0.36,p=0.075458269 GPC6,FC=-0.01,p=0.971399427 GPC6,FC=0.98,p=2.3e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=1.54,p=2.23e-14 POU4F1,FC=1.09,p=1.14e-05 RNF219,FC=0.66,p=0.000909699 RNF219,FC=-0.12,p=0.241240288 RBM26,FC=0.35,p=0.003702557 RBM26,FC=0.14,p=0.062602473 RBM26,FC=0.02,p=0.89505865 NDFIP2,FC=0.04,p=0.736928977 NDFIP2,FC=0.83,p=3.7e-11 SPRY2,FC=-1.23,p=1.13e-15 SLITRK1,FC=0.88,p=4.97e-05 SLITRK6,FC=0.30,p=0.413928078 SLITRK6,FC=0.61,p=0.022879654 SLITRK6,FC=1.22,p=1.27e-05 SLITRK5,FC=-0.54,p=0.026494411 GPC5,FC=-0.21,p=0.334443319 GPC5,FC=0.57,p=0.022668096 GPC5,FC=-2.51,p=1.78e-21 GPC6,FC=0.58,p=0.006786445 GPC6,FC=0.42,p=0.14279237 GPC6,FC=0.18,p=0.404952152 GPC6,FC=-0.26,p=0.256910669 GPC6,FC=-0.31,p=0.142685131 GPC6,FC=0.42,p=0.08066147


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.57,p=0.160609294 SPRY2,FC=-0.96,p=0.011511744 GPC5,FC=-0.01,p=0.986117118

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.80,p=0.057364466 SPRY2,FC=-0.86,p=0.035368391 GPC5,FC=0.17,p=0.826723474


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.10,p=0.016017412 NDFIP2,FC=-0.20,p=0.007195484 SPRY2,FC=-0.13,p=0.246030185 SLITRK1,FC=0.02,p=0.56822265 SLITRK6,FC=0.19,p=0.39797946 SLITRK5,FC=0.17,p=0.019369049 GPC5,FC=0.02,p=0.574734581 GPC5,FC=0.04,p=0.449827436 GPC6,FC=-0.08,p=0.146915152

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POU4F1,FC=0.13,p=0.000636761 NDFIP2,FC=-0.22,p=0.009922617 SPRY2,FC=-0.27,p=0.008225611 SLITRK1,FC=0.05,p=0.543997515 SLITRK6,FC=0.10,p=0.537010261 SLITRK5,FC=0.12,p=0.03057115 GPC5,FC=0.02,p=0.412347859 GPC5,FC=0.02,p=0.736831357 GPC6,FC=-0.11,p=0.041288335


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-622,Mean=0.69 hsa-miR-17,Mean=-0.13 hsa-miR-17,Mean=-3.33 hsa-miR-18a,Mean=-1.03 hsa-miR-18a,Mean=-0.36 hsa-miR-19a,Mean=-3.29 hsa-miR-20a,Mean=-4.10

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-622,Mean=0.61 hsa-miR-17,Mean=-0.33 hsa-miR-17,Mean=-3.98 hsa-miR-18a,Mean=-1.07 hsa-miR-18a,Mean=-0.18 hsa-miR-19a,Mean=-3.31 hsa-miR-20a,Mean=-4.65

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-622,Mean=0.02 hsa-mir-17,Mean=0.12 hsa-mir-18a,Mean=0.16 hsa-mir-19a,Mean=0.17 hsa-mir-20a,Mean=0.15 hsa-mir-19b-1,Mean=0.10 hsa-mir-92a-1,Mean=0.14

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-622,Mean=0.03 hsa-mir-17,Mean=0.29 hsa-mir-18a,Mean=0.56 hsa-mir-19a,Mean=0.38 hsa-mir-20a,Mean=0.35 hsa-mir-19b-1,Mean=0.32 hsa-mir-92a-1,Mean=0.25

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

POU4F1,FC=-0.28,p=0.019118836 POU4F1,FC=1.02,p=2.29e-06 RNF219,FC=0.09,p=0.112478685 RBM26,FC=0.58,p=1.55e-18 RBM26,FC=-0.22,p=0.048084986 SPRY2,FC=-0.41,p=8.18e-06 SLITRK5,FC=0.14,p=0.400134345 GPC5,FC=-1.02,p=8.59e-07

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-388E20, 5/50, 0.1 RP11-388E20, 22/50, 0.44 RP11-52L5, 1/50, 0.02 RP11-52L5, 11/50, 0.22 RP11-421K11, 3/50, 0.06 RP11-421K11, 12/50, 0.24 RP11-533P8, 4/50, 0.08 RP11-533P8, 9/50, 0.18 RP11-115N13, 5/50, 0.1 RP11-115N13, 21/50, 0.42 RP11-464I4, 2/50, 0.04 RP11-464I4, 11/50, 0.22 RP11-120L14, 5/50, 0.1 RP11-120L14, 14/50, 0.28 RP11-376H15, 0/50, 0 RP11-376H15, 5/50, 0.1 RP11-366K1, 3/50, 0.06 RP11-366K1, 10/50, 0.2 RP11-365J7, 1/50, 0.02 RP11-365J7, 7/50, 0.14 RP11-478H12, 1/50, 0.02 RP11-478H12, 17/50, 0.34 RP11-275J18, 0/50, 0 RP11-275J18, 9/50, 0.18 RP11-388D4, 1/50, 0.02 RP11-388D4, 11/50, 0.22 RP11-319L6, 1/50, 0.02 RP11-319L6, 11/50, 0.22 RP11-95C14, 5/50, 0.1 RP11-95C14, 11/50, 0.22 RP11-632L2, 0/50, 0 RP11-632L2, 13/50, 0.26 RP11-62D23, 1/50, 0.02 RP11-62D23, 16/50, 0.32

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12599234 PMID=15983384

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D13S170, 18/42, 43% D13S170, 8/17, 47% PMID=10987304 D13S265, 6/12, 50% D13S317, 8/15, 53% PMID=15900585 D13S317, 5/15, 33%

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