IGDB.NSCLC Chromosome View

Chromosome 13
13p13 13p12 13p11 13q11 13q12 13q13 13q14 13q21 13q22 13q31 13q32 13q33 13q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGBL1,FC=0.40,p=0.004632466 TPP2,FC=-0.06,p=0.562910133 C13orf27,FC=-0.17,p=0.411290455 ERCC5,FC=-0.46,p=0.033317293 ERCC5,FC=-0.19,p=0.026318289 SLC10A2,FC=-0.00,p=0.990171248 EFNB2,FC=-1.30,p=5.29e-10 EFNB2,FC=-1.13,p=4.07e-06 FAM155A,FC=0.16,p=0.539669536 LIG4,FC=-0.04,p=0.800143744 MYO16,FC=0.32,p=0.115939825

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGBL1,FC=-0.04,p=0.801675995 TPP2,FC=-0.31,p=0.024815259 C13orf27,FC=0.21,p=0.367810818 ERCC5,FC=-0.52,p=0.020949525 ERCC5,FC=-0.37,p=0.002558045 SLC10A2,FC=0.24,p=0.43188185 EFNB2,FC=-1.14,p=2.13e-07 EFNB2,FC=-1.59,p=5.45e-06 FAM155A,FC=-0.12,p=0.747969232 LIG4,FC=-0.55,p=0.022807141 MYO16,FC=0.29,p=0.244698584


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGBL1,FC=0.41,p=0.001435889 FGF14,FC=-1.14,p=1.72e-14 TPP2,FC=0.59,p=2.24e-19 TPP2,FC=-0.03,p=0.719239348 C13orf27,FC=0.22,p=0.000906136 KDELC1,FC=0.15,p=0.199212692 ERCC5,FC=-0.40,p=7.9e-09 SLC10A2,FC=-0.33,p=0.000396984 EFNB2,FC=-1.34,p=5.56e-26 EFNB2,FC=-1.42,p=1.08e-34 ARGLU1,FC=-0.83,p=5.26e-20 FAM155A,FC=-0.32,p=0.01692807 LIG4,FC=0.09,p=0.20553044 MYO16,FC=-0.33,p=0.001109604

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGBL1,FC=-1.65,p=6.78e-15 FGF14,FC=1.40,p=1.98e-22 TPP2,FC=0.78,p=2.47e-20 TPP2,FC=1.63,p=1.41e-16 C13orf27,FC=1.58,p=3.55e-62 KDELC1,FC=0.64,p=1.12e-12 ERCC5,FC=0.35,p=1.6e-07 SLC10A2,FC=1.48,p=9.31e-40 EFNB2,FC=-0.28,p=0.005007635 EFNB2,FC=-2.52,p=2.45e-86 ARGLU1,FC=-2.19,p=3.07e-88 FAM155A,FC=2.44,p=8.54e-60 LIG4,FC=-0.10,p=0.395639828 MYO16,FC=1.48,p=2.62e-32


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NALCN,FC=0.09,p=0.645143234 NALCN,FC=-0.46,p=0.00656442 NALCN,FC=0.19,p=0.251358038 ITGBL1,FC=0.20,p=0.2362432 ITGBL1,FC=-0.13,p=0.571639068 FGF14,FC=-1.88,p=3.01e-24 FGF14,FC=-0.03,p=0.884600862 FGF14,FC=-1.26,p=2.56e-08 TPP2,FC=-0.31,p=3.54e-06 TPP2,FC=0.37,p=9.48e-05 TPP2,FC=0.60,p=2.96e-06 TPP2,FC=-0.39,p=0.057865358 C13orf39,FC=0.22,p=0.276798274 C13orf27,FC=0.06,p=0.500404866 KDELC1,FC=-0.09,p=0.547978597 BIVM,FC=-0.00,p=0.990861879 BIVM,FC=-0.42,p=0.007704307 BIVM,FC=0.40,p=0.0090638 BIVM,FC=-0.28,p=0.226120895 ERCC5,FC=-0.51,p=9.02e-11 LOC121952,FC=0.62,p=0.000477003 SLC10A2,FC=-0.05,p=0.742411698 DAOA,FC=-0.09,p=0.635222 DAOA,FC=0.38,p=0.035466976 EFNB2,FC=-0.94,p=1.16e-13 EFNB2,FC=-1.46,p=1.43e-18 ARGLU1,FC=-0.86,p=1.47e-21 ARGLU1,FC=-0.07,p=0.80455594 FAM155A,FC=-0.53,p=5.52e-05 FAM155A,FC=-0.36,p=0.050762316 FAM155A,FC=-0.08,p=0.691672344 FAM155A,FC=0.14,p=0.518722658 LIG4,FC=-0.69,p=3.51e-09 LIG4,FC=-0.62,p=1.44e-06 ABHD13,FC=-1.19,p=9.84e-18 ABHD13,FC=-1.19,p=2.04e-11 TNFSF13B,FC=-0.52,p=0.000204569 TNFSF13B,FC=-0.54,p=9.02e-05 MYO16,FC=0.61,p=0.001753333 MYO16,FC=-0.40,p=0.041409097 MYO16,FC=0.29,p=0.212960417

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NALCN,FC=0.34,p=0.147900983 NALCN,FC=-1.31,p=6.69e-10 NALCN,FC=0.25,p=0.23483224 ITGBL1,FC=-0.44,p=0.064190668 ITGBL1,FC=-1.00,p=5.41e-05 FGF14,FC=-1.56,p=4.24e-16 FGF14,FC=-0.01,p=0.965724279 FGF14,FC=-1.38,p=2.05e-07 TPP2,FC=-0.68,p=2.95e-13 TPP2,FC=0.34,p=0.000769061 TPP2,FC=0.25,p=0.082000894 TPP2,FC=-1.16,p=6.22e-06 C13orf39,FC=0.28,p=0.239603283 C13orf27,FC=0.32,p=0.005445606 KDELC1,FC=-0.04,p=0.822554856 BIVM,FC=0.40,p=0.000158661 BIVM,FC=-0.50,p=0.001457024 BIVM,FC=0.64,p=0.000677707 BIVM,FC=-0.35,p=0.155032614 ERCC5,FC=-0.67,p=6.41e-14 LOC121952,FC=1.12,p=1.62e-07 SLC10A2,FC=-0.19,p=0.30947116 DAOA,FC=-0.20,p=0.337720385 DAOA,FC=0.91,p=7.27e-06 EFNB2,FC=-0.68,p=9.99e-08 EFNB2,FC=-1.47,p=2.13e-12 ARGLU1,FC=-0.87,p=8.72e-18 ARGLU1,FC=-0.56,p=0.023881811 FAM155A,FC=-0.46,p=0.00691995 FAM155A,FC=-1.18,p=9.37e-08 FAM155A,FC=-0.54,p=0.014160266 FAM155A,FC=-0.02,p=0.949793429 LIG4,FC=-1.33,p=1.91e-17 LIG4,FC=-1.17,p=2.54e-13 ABHD13,FC=-1.73,p=1.44e-22 ABHD13,FC=-1.97,p=4.24e-16 TNFSF13B,FC=-1.65,p=4.96e-14 TNFSF13B,FC=-1.58,p=1.32e-12 MYO16,FC=0.88,p=1.92e-05 MYO16,FC=-0.91,p=5.29e-08 MYO16,FC=0.10,p=0.709184821


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TPP2,FC=0.02,p=0.951132464 ERCC5,FC=0.04,p=0.866812652 SLC10A2,FC=1.22,p=0.007820684 SLC10A2,FC=-0.22,p=0.577797735 EFNB2,FC=-0.42,p=0.316325393 EFNB2,FC=-0.07,p=0.792580795 EFNB2,FC=-0.42,p=0.316325393 EFNB2,FC=-0.55,p=0.120532274 LIG4,FC=-0.24,p=0.263157808 TNFSF13B,FC=-1.77,p=0.000618063

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TPP2,FC=-0.26,p=0.482233076 ERCC5,FC=-0.36,p=0.323175192 SLC10A2,FC=1.43,p=0.017556008 SLC10A2,FC=0.54,p=0.302186173 EFNB2,FC=-0.65,p=0.10092379 EFNB2,FC=0.32,p=0.362614843 EFNB2,FC=-0.65,p=0.10092379 EFNB2,FC=-0.57,p=0.081237102 LIG4,FC=-0.17,p=0.491768926 TNFSF13B,FC=-1.72,p=0.001769245


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGBL1,FC=-0.13,p=0.249973457 FGF14,FC=-0.09,p=0.003519878 FGF14,FC=-0.03,p=0.679218069 TPP2,FC=0.13,p=0.020080485 KDELC1,FC=-0.01,p=0.901971748 BIVM,FC=-0.11,p=0.027738472 ERCC5,FC=-0.01,p=0.817670828 SLC10A2,FC=0.12,p=0.121499558 DAOA,FC=0.01,p=0.543618948 LIG4,FC=-0.02,p=0.350255427 TNFSF13B,FC=-0.13,p=0.100963245

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGBL1,FC=-0.32,p=6.86e-05 FGF14,FC=-0.10,p=3.55e-05 FGF14,FC=-0.00,p=0.987961965 TPP2,FC=0.13,p=0.006617272 KDELC1,FC=0.03,p=0.632623696 BIVM,FC=-0.13,p=0.005389467 ERCC5,FC=-0.09,p=0.11156806 SLC10A2,FC=0.11,p=0.159514313 DAOA,FC=0.00,p=0.907502743 LIG4,FC=-0.02,p=0.451579163 TNFSF13B,FC=-0.20,p=0.001301039


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

ITGBL1,FC=0.77,p=1.12e-06 FGF14,FC=-0.73,p=8.02e-05 TPP2,FC=0.74,p=1.4e-19 TPP2,FC=0.07,p=0.222298948 C13orf27,FC=0.03,p=0.656742564 KDELC1,FC=0.17,p=0.163566564 ERCC5,FC=-0.21,p=0.001454371 SLC10A2,FC=-0.41,p=0.00082078 EFNB2,FC=-1.19,p=2.77e-18 EFNB2,FC=-1.31,p=7.08e-26 ARGLU1,FC=-0.98,p=3.91e-21 FAM155A,FC=-0.32,p=0.057404806 LIG4,FC=0.20,p=0.008230307 MYO16,FC=-0.40,p=0.001125893

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-564N10, 0/50, 0 RP11-564N10, 9/50, 0.18 RP11-255P5, 1/50, 0.02 RP11-255P5, 9/50, 0.18 RP11-502J9, 0/50, 0 RP11-502J9, 15/50, 0.3 RP11-562E17, 3/50, 0.06 RP11-562E17, 14/50, 0.28 RP11-406G20, 0/50, 0 RP11-406G20, 11/50, 0.22 RP11-232K22, 2/50, 0.04 RP11-232K22, 11/50, 0.22 RP11-513N16, 3/50, 0.06 RP11-513N16, 10/50, 0.2 RP11-141M24, 1/50, 0.02 RP11-141M24, 7/50, 0.14

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D13S797, 11/31, 35% Our unpublished data D13S173, 15/39, 38% Our unpublished data D13S895, 17/22, 77% D13S158, 11/21, 52% D13S173, 10/18, 56% PMID=10987304 D13S1265, 7/17, 41% D13S796, 12/31, 39% PMID=15900585 D13S796, 13/24, 54%

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