IGDB.NSCLC Chromosome View

Chromosome 17
17p13 17p12 17p11 17q11 17q12 17q21 17q22 17q23 17q24 17q25         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , MAP2K4, 0.37%, 1/267

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.27,p=0.248502533 DNAH9,FC=-0.39,p=0.024219067 MAP2K4,FC=0.15,p=0.512378481 MAP2K4,FC=-0.60,p=0.000465123 MAP2K4,FC=-0.26,p=0.158147328 RICH2,FC=-1.20,p=5.38e-09 ELAC2,FC=-0.08,p=0.621803089 ELAC2,FC=0.31,p=0.076739975 COX10,FC=0.33,p=0.025611756 PMP22,FC=-1.32,p=8.2e-24 CDRT1,FC=-0.12,p=0.405724135 MEIS3P1,FC=-0.40,p=0.000641174 ADORA2B,FC=0.52,p=0.028870919

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.46,p=0.153798418 DNAH9,FC=0.04,p=0.863894141 MAP2K4,FC=-0.13,p=0.699125014 MAP2K4,FC=-0.49,p=0.045990293 MAP2K4,FC=0.33,p=0.10492025 RICH2,FC=-1.84,p=6.91e-14 ELAC2,FC=-0.10,p=0.633794576 ELAC2,FC=-0.30,p=0.261257185 COX10,FC=0.49,p=0.006569203 PMP22,FC=-1.77,p=1.02e-18 CDRT1,FC=-0.34,p=0.120240889 MEIS3P1,FC=-1.34,p=1.12e-10 ADORA2B,FC=0.75,p=0.009341272


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.71,p=5.01e-19 DNAH9,FC=-0.62,p=8.85e-05 MAP2K4,FC=-0.04,p=0.473517059 MAP2K4,FC=-0.19,p=0.000177677 RICH2,FC=0.14,p=0.028240782 RICH2,FC=-1.31,p=1.17e-15 ELAC2,FC=1.09,p=1.23e-22 HS3ST3A1,FC=0.48,p=0.003471236 COX10,FC=-0.07,p=0.127066527 COX10,FC=-0.20,p=0.13649619 HS3ST3B1,FC=-0.13,p=0.238568987 PMP22,FC=-1.56,p=1.94e-51 CDRT1,FC=-0.12,p=0.206901236 CDRT1,FC=-0.05,p=0.594247429 CDRT1,FC=-0.00,p=0.978311692 ZNF286A,FC=-0.07,p=0.480166427 MEIS3P1,FC=-0.04,p=0.556721161 ADORA2B,FC=0.78,p=4.16e-16 TTC19,FC=-0.29,p=1.77e-06 NCOR1,FC=-0.03,p=0.570666976 NCOR1,FC=-0.20,p=0.000114956

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=2.39,p=2.1e-91 DNAH9,FC=-0.27,p=0.101794864 MAP2K4,FC=1.17,p=3.51e-41 MAP2K4,FC=-0.37,p=4.67e-06 RICH2,FC=-2.17,p=4.23e-47 RICH2,FC=-4.89,p=1.54e-145 ELAC2,FC=3.61,p=1.09e-81 HS3ST3A1,FC=2.40,p=1.15e-44 COX10,FC=0.37,p=5.11e-08 COX10,FC=2.11,p=2.49e-44 HS3ST3B1,FC=-0.56,p=2.23e-05 PMP22,FC=-3.27,p=6.23e-132 CDRT1,FC=1.56,p=1.84e-39 CDRT1,FC=-1.02,p=4.68e-08 CDRT1,FC=3.88,p=2.66e-76 ZNF286A,FC=-0.44,p=0.000446679 MEIS3P1,FC=3.14,p=9.22e-129 ADORA2B,FC=0.94,p=8.06e-34 TTC19,FC=-6.63,p=1.26e-148 NCOR1,FC=1.10,p=4.13e-31 NCOR1,FC=-2.10,p=3.63e-88


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-1.83,p=2.24e-15 DNAH9,FC=-0.80,p=9.31e-05 DNAH9,FC=-1.65,p=7.46e-10 ZNF18,FC=-0.11,p=0.156914548 MAP2K4,FC=-0.07,p=0.371908003 MAP2K4,FC=-0.40,p=3.8e-09 RICH2,FC=0.14,p=0.25987846 RICH2,FC=-1.66,p=4.17e-22 ELAC2,FC=-0.23,p=0.022840271 HS3ST3A1,FC=0.78,p=4.09e-06 COX10,FC=0.58,p=0.005781079 COX10,FC=0.47,p=5.93e-10 HS3ST3B1,FC=0.52,p=0.005296262 HS3ST3B1,FC=0.41,p=0.030095527 PMP22,FC=-1.57,p=6.73e-35 PMP22,FC=-1.31,p=5.17e-14 PMP22,FC=0.41,p=0.002706206 TEKT3,FC=-2.02,p=8.65e-17 CDRT4,FC=0.28,p=0.000182429 CDRT4,FC=0.16,p=0.082443395 FAM18B2,FC=0.74,p=5.15e-08 CDRT1,FC=0.47,p=0.001421452 CDRT1,FC=0.56,p=0.000765431 CDRT1,FC=0.21,p=0.236464087 ZNF286A,FC=0.88,p=1.67e-07 ZNF286A,FC=0.29,p=0.000273513 ZNF286A,FC=0.37,p=0.00062156 ZNF286A,FC=0.37,p=0.007880965 TBC1D26,FC=-0.01,p=0.941297214 TBC1D26,FC=0.21,p=0.068737963 MEIS3P1,FC=-0.57,p=5.2e-10 ADORA2B,FC=0.63,p=5.29e-06 ADORA2B,FC=-0.09,p=0.549460281 ZSWIM7,FC=-0.35,p=0.004593826 ZSWIM7,FC=-0.67,p=5.45e-05 TTC19,FC=-0.40,p=5.86e-09 NCOR1,FC=0.35,p=0.134837012 NCOR1,FC=-0.55,p=0.002043833 NCOR1,FC=0.00,p=0.946597353 NCOR1,FC=-0.06,p=0.269110219

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-1.90,p=1.06e-12 DNAH9,FC=-0.63,p=0.010170807 DNAH9,FC=-1.50,p=1.89e-07 ZNF18,FC=-0.15,p=0.168764813 MAP2K4,FC=-0.10,p=0.177653624 MAP2K4,FC=-0.59,p=1.25e-12 RICH2,FC=0.44,p=0.005947634 RICH2,FC=-2.88,p=1.4e-40 ELAC2,FC=-0.18,p=0.09870524 HS3ST3A1,FC=1.53,p=3.26e-13 COX10,FC=0.82,p=0.000741682 COX10,FC=0.89,p=3.46e-15 HS3ST3B1,FC=0.72,p=0.002493319 HS3ST3B1,FC=0.12,p=0.533941479 PMP22,FC=-1.95,p=3.04e-28 PMP22,FC=-2.09,p=6.56e-19 PMP22,FC=0.12,p=0.356590286 TEKT3,FC=-2.75,p=1.06e-23 CDRT4,FC=0.01,p=0.88704922 CDRT4,FC=0.15,p=0.066393991 FAM18B2,FC=1.21,p=5.87e-12 CDRT1,FC=0.52,p=0.001225785 CDRT1,FC=1.10,p=3.81e-08 CDRT1,FC=0.24,p=0.209106806 ZNF286A,FC=1.50,p=3.81e-13 ZNF286A,FC=0.50,p=1.37e-08 ZNF286A,FC=0.90,p=9.58e-18 ZNF286A,FC=0.61,p=8.75e-05 TBC1D26,FC=-0.27,p=0.228243227 TBC1D26,FC=0.11,p=0.469545345 MEIS3P1,FC=-1.38,p=7.63e-25 ADORA2B,FC=0.77,p=6.16e-07 ADORA2B,FC=-0.02,p=0.913322076 ZSWIM7,FC=-0.92,p=6.76e-11 ZSWIM7,FC=-1.06,p=1.87e-08 TTC19,FC=-0.59,p=1.83e-14 NCOR1,FC=-0.38,p=0.142057719 NCOR1,FC=-1.29,p=6.5e-12 NCOR1,FC=0.11,p=0.118285746 NCOR1,FC=-0.13,p=0.084687029


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.73,p=0.045466532 MAP2K4,FC=-0.40,p=0.097361476 HS3ST3A1,FC=0.37,p=0.392969669 COX10,FC=0.02,p=0.937082156 COX10,FC=0.30,p=0.210864364 HS3ST3B1,FC=0.07,p=0.838065887 HS3ST3B1,FC=-0.15,p=0.787978811 PMP22,FC=-0.50,p=0.196715218 TEKT3,FC=-0.95,p=0.015652535 ADORA2B,FC=0.28,p=0.375215175 NCOR1,FC=0.35,p=0.358038872 NCOR1,FC=0.64,p=0.044044164 NCOR1,FC=0.22,p=0.35638863 NCOR1,FC=-0.51,p=0.024808764 NCOR1,FC=0.39,p=0.196485396 NCOR1,FC=-0.22,p=0.384596656

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.21,p=0.659567174 MAP2K4,FC=-0.60,p=0.015336562 HS3ST3A1,FC=0.90,p=0.025739442 COX10,FC=0.13,p=0.663147515 COX10,FC=0.42,p=0.281974632 HS3ST3B1,FC=0.75,p=0.13618538 HS3ST3B1,FC=0.44,p=0.449561716 PMP22,FC=-1.43,p=0.010398519 TEKT3,FC=-0.77,p=0.195566128 ADORA2B,FC=0.38,p=0.208037846 NCOR1,FC=0.23,p=0.561416636 NCOR1,FC=0.70,p=0.201882756 NCOR1,FC=-0.17,p=0.597552001 NCOR1,FC=-0.88,p=0.081430933 NCOR1,FC=0.79,p=0.016149735 NCOR1,FC=-0.20,p=0.489755603


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.20,p=1.25e-05 ZNF18,FC=0.01,p=0.86724003 MAP2K4,FC=-0.07,p=0.115879019 HS3ST3A1,FC=0.07,p=0.237862462 COX10,FC=0.01,p=0.632140863 PMP22,FC=-0.59,p=7.19e-08 TEKT3,FC=-0.04,p=0.557349654 ADORA2B,FC=0.30,p=0.001929304 TTC19,FC=-0.01,p=0.915571754 TTC19,FC=-0.05,p=0.50241761 NCOR1,FC=-0.09,p=0.262170197 NCOR1,FC=0.11,p=0.083509628

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DNAH9,FC=-0.15,p=0.029577853 ZNF18,FC=0.10,p=0.124641665 MAP2K4,FC=-0.06,p=0.215710178 HS3ST3A1,FC=0.20,p=0.043427335 COX10,FC=0.04,p=0.33835733 PMP22,FC=-0.76,p=8.77e-10 TEKT3,FC=-0.04,p=0.441728061 ADORA2B,FC=0.45,p=8.2e-05 TTC19,FC=-0.10,p=0.301580521 TTC19,FC=-0.14,p=0.039069237 NCOR1,FC=-0.13,p=0.130771678 NCOR1,FC=0.07,p=0.273475193


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

DNAH9,FC=-0.95,p=5.38e-22 DNAH9,FC=-0.66,p=0.001225154 MAP2K4,FC=0.14,p=0.037733784 MAP2K4,FC=-0.34,p=1.12e-13 RICH2,FC=0.19,p=0.014445011 RICH2,FC=-1.08,p=2.5e-11 ELAC2,FC=1.17,p=5e-21 HS3ST3A1,FC=0.94,p=7.68e-08 COX10,FC=-0.34,p=1.78e-09 COX10,FC=-0.37,p=0.027501836 HS3ST3B1,FC=-0.37,p=0.002676381 PMP22,FC=-1.33,p=4.61e-34 CDRT1,FC=-0.30,p=0.00718641 CDRT1,FC=-0.03,p=0.770014508 CDRT1,FC=-0.05,p=0.652174307 ZNF286A,FC=-0.09,p=0.407372662 MEIS3P1,FC=0.19,p=0.019084373 ADORA2B,FC=0.61,p=5.47e-10 TTC19,FC=-0.29,p=6.65e-06 NCOR1,FC=-0.13,p=0.01087301 NCOR1,FC=-0.19,p=0.000629918

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-471L13, 1/50, 0.02 RP11-471L13, 13/50, 0.26 RP11-488L1, 1/50, 0.02 RP11-488L1, 14/50, 0.28 RP11-388F14, 1/50, 0.02 RP11-388F14, 18/50, 0.36 RP1-27J12, 2/50, 0.04 RP1-27J12, 16/50, 0.32 RP11-385D13, 5/50, 0.1 RP11-385D13, 12/50, 0.24

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=15093586 PMID=15983384

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D17S969, 21/35, 60% D17S799, 16/20, 80% PMID=10987304 D17S921, 12/16, 75%

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