IGDB.NSCLC Chromosome View

Chromosome 17
17p13 17p12 17p11 17q11 17q12 17q21 17q22 17q23 17q24 17q25         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

ERBB2, up, 39/238(16%) ERBB2, up, 83/410(20%) ERBB2, up, 26/115(23%) ERBB2, up, 33/89(37%) ERBB2, up, 25/85(29%) ERBB2, up, 100/238(42%) RASL10B, 100.00%, 1/1 ERBB2, 1.70%, 47/2766 GRB7, 1.06%, 2/189

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-0.71,p=6.6e-05 CCL2,FC=-0.98,p=7.26e-07 CCL2,FC=-1.08,p=3.77e-07 CCL7,FC=0.31,p=0.022751693 CCL11,FC=-0.07,p=0.739677462 CCL8,FC=-0.02,p=0.942195779 CCL13,FC=-0.44,p=0.06773845 CCL1,FC=0.71,p=0.000635538 CCT6B,FC=-0.12,p=0.577189636 LIG3,FC=0.27,p=0.073455369 LIG3,FC=0.35,p=0.002470135 LIG3,FC=0.55,p=0.005464849 RAD51L3,FC=0.45,p=0.00230673 RAD51L3,FC=0.29,p=0.015813461 NLE1,FC=0.17,p=0.134801222 PEX12,FC=-0.22,p=0.305473379 AP2B1,FC=-0.20,p=0.051487586 TAF15,FC=0.47,p=3.11e-05 CCL5,FC=-0.96,p=0.000443652 CCL5,FC=-0.53,p=0.00084794 CCL5,FC=-0.90,p=0.031446503 LYZL6,FC=0.39,p=0.025685406 LYZL6,FC=0.44,p=0.030929448 LYZL6,FC=1.02,p=8.45e-05 CCL16,FC=-0.02,p=0.920807637 CCL23,FC=-1.83,p=8.81e-11 CCL23,FC=-0.56,p=0.001443255 CCL18,FC=-0.77,p=0.008131906 ZNHIT3,FC=0.10,p=0.262700573 LHX1,FC=0.32,p=0.123589416 LHX1,FC=0.47,p=0.004857987 AATF,FC=0.22,p=0.009855565 ACACA,FC=0.25,p=0.003276486 TADA2L,FC=-0.14,p=0.568545987 DUSP14,FC=-0.01,p=0.952057607 DDX52,FC=0.43,p=0.002454534 HNF1B,FC=-0.49,p=0.030435318 HNF1B,FC=-0.09,p=0.6225577 HNF1B,FC=0.03,p=0.863238698 SOCS7,FC=0.17,p=0.234857847 PCGF2,FC=-0.10,p=0.172441537 PCGF2,FC=-0.26,p=0.13101699 PSMB3,FC=0.20,p=0.031803341 PIP4K2B,FC=-0.30,p=0.000168112 RPL23,FC=0.18,p=0.05290469 LASP1,FC=-0.06,p=0.555109263 PLXDC1,FC=0.19,p=0.298459541 CACNB1,FC=0.16,p=0.314078395 CACNB1,FC=0.79,p=0.002775795 CACNB1,FC=0.56,p=2.88e-07 RPL19,FC=0.14,p=0.018144937 MED1,FC=0.23,p=0.052387607 CRKRS,FC=0.73,p=1.38e-05 NEUROD2,FC=0.27,p=0.009578844 STARD3,FC=0.02,p=0.882582968 TCAP,FC=0.35,p=0.000131791 PNMT,FC=0.24,p=0.013735592 ERBB2,FC=0.55,p=0.002898676 ERBB2,FC=0.12,p=0.383509862 ERBB2,FC=0.47,p=7.52e-05 GRB7,FC=0.35,p=0.000880321 PSMD3,FC=0.45,p=2.74e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-1.10,p=0.000125707 CCL2,FC=-1.66,p=5.24e-06 CCL2,FC=-1.95,p=3.89e-07 CCL7,FC=0.22,p=0.175439378 CCL11,FC=0.51,p=0.087617041 CCL8,FC=-0.55,p=0.203132497 CCL13,FC=-1.25,p=3.25e-05 CCL1,FC=1.26,p=6.82e-05 CCT6B,FC=0.40,p=0.137655566 LIG3,FC=0.58,p=0.007715952 LIG3,FC=0.56,p=0.000226466 LIG3,FC=1.29,p=6.87e-06 RAD51L3,FC=1.09,p=8.77e-08 RAD51L3,FC=0.65,p=0.000731977 NLE1,FC=0.34,p=0.019635797 PEX12,FC=0.10,p=0.757030186 AP2B1,FC=-0.10,p=0.471684499 TAF15,FC=0.64,p=0.000132172 CCL5,FC=-1.02,p=0.001029779 CCL5,FC=-0.80,p=0.000255676 CCL5,FC=-1.40,p=0.014945897 LYZL6,FC=0.75,p=0.003811911 LYZL6,FC=0.71,p=0.002873518 LYZL6,FC=1.30,p=0.001541864 CCL16,FC=0.08,p=0.723031325 CCL23,FC=-2.26,p=1.27e-09 CCL23,FC=-0.51,p=0.058200435 CCL18,FC=-1.22,p=0.000195149 ZNHIT3,FC=-0.05,p=0.657576695 LHX1,FC=0.96,p=0.001414221 LHX1,FC=0.96,p=0.000213902 AATF,FC=0.32,p=0.00127117 ACACA,FC=0.24,p=0.016579172 TADA2L,FC=0.41,p=0.255284142 DUSP14,FC=0.64,p=0.002532262 DDX52,FC=0.41,p=0.044731235 HNF1B,FC=-2.28,p=1.46e-17 HNF1B,FC=-1.86,p=1.78e-16 HNF1B,FC=-1.32,p=1.43e-07 SOCS7,FC=-0.11,p=0.597577832 PCGF2,FC=-0.23,p=0.001083334 PCGF2,FC=-0.44,p=0.058269369 PSMB3,FC=0.17,p=0.067582724 PIP4K2B,FC=-0.57,p=2.04e-08 RPL23,FC=0.12,p=0.255214867 LASP1,FC=-0.32,p=0.000542895 PLXDC1,FC=-0.00,p=0.988144638 CACNB1,FC=-0.07,p=0.766167538 CACNB1,FC=-0.14,p=0.642018882 CACNB1,FC=0.50,p=0.000128622 RPL19,FC=0.13,p=0.072736827 MED1,FC=0.16,p=0.303674591 CRKRS,FC=0.58,p=0.020585092 NEUROD2,FC=0.35,p=0.022813702 STARD3,FC=-0.23,p=0.042044827 TCAP,FC=0.28,p=0.035450077 PNMT,FC=0.41,p=0.000497138 ERBB2,FC=-0.79,p=0.000265799 ERBB2,FC=-0.47,p=0.000475039 ERBB2,FC=-0.49,p=8.01e-06 GRB7,FC=0.19,p=0.06706729 PSMD3,FC=0.90,p=9.91e-09


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-0.81,p=4.2e-06 CCL7,FC=0.15,p=0.281395241 CCL11,FC=-0.24,p=0.042857986 CCL8,FC=-0.09,p=0.541745869 CCL13,FC=0.10,p=0.459544942 CCL1,FC=-0.34,p=1.78e-07 CCT6B,FC=-0.24,p=5.18e-06 LIG3,FC=0.85,p=2.86e-12 LIG3,FC=0.32,p=1.22e-06 RAD51L3,FC=0.11,p=0.038683085 RAD51L3,FC=-0.04,p=0.469848953 FNDC8,FC=0.17,p=0.115528476 NLE1,FC=-0.20,p=0.028592252 NLE1,FC=1.35,p=4.32e-33 SRCAP,FC=0.26,p=0.000411291 SLFN12,FC=-0.09,p=0.468033582 PEX12,FC=-0.48,p=6.21e-14 AP2B1,FC=0.49,p=8.33e-13 AP2B1,FC=0.29,p=0.000789835 MMP28,FC=-2.51,p=2.39e-28 TAF15,FC=0.86,p=3.8e-31 CCL5,FC=-0.63,p=0.000330549 CCL5,FC=-0.51,p=1.01e-05 LYZL6,FC=-0.20,p=0.00309752 CCL16,FC=-0.56,p=2.02e-06 CCL23,FC=-1.44,p=1.23e-23 CCL23,FC=-1.89,p=6.91e-32 CCL18,FC=-0.77,p=3.81e-06 CCL18,FC=-0.68,p=7.04e-05 CCL4,FC=-0.92,p=2.71e-15 ZNHIT3,FC=0.31,p=3.04e-10 MYO19,FC=-0.05,p=0.359201484 GGNBP2,FC=0.05,p=0.310124445 DHRS11,FC=0.84,p=9.83e-17 MRM1,FC=0.26,p=0.000139895 LHX1,FC=0.50,p=0.000478309 AATF,FC=0.32,p=2.65e-10 ACACA,FC=0.08,p=0.441271718 ACACA,FC=0.89,p=2.35e-08 TADA2L,FC=0.06,p=0.309346105 TADA2L,FC=0.92,p=2.2e-13 DUSP14,FC=0.01,p=0.92974918 DDX52,FC=0.34,p=2.1e-08 HNF1B,FC=-0.43,p=0.003225117 HNF1B,FC=-0.16,p=0.13504828 SOCS7,FC=0.18,p=0.146935057 PCGF2,FC=-0.36,p=1.11e-06 PCGF2,FC=0.30,p=0.000142159 PCGF2,FC=-0.27,p=6.56e-07 PCGF2,FC=-0.27,p=2.88e-07 PSMB3,FC=0.68,p=2.88e-33 PIP4K2B,FC=0.44,p=2.9e-07 PIP4K2B,FC=-0.43,p=1.33e-17 CCDC49,FC=-0.39,p=1.36e-21 RPL23,FC=0.06,p=0.118491371 LASP1,FC=0.03,p=0.589720536 PLXDC1,FC=0.02,p=0.806989683 PLXDC1,FC=0.20,p=0.019171592 CACNB1,FC=-0.36,p=6.33e-06 CACNB1,FC=-0.53,p=1.64e-10 CACNB1,FC=-0.03,p=0.639199262 RPL19,FC=0.02,p=0.591179222 MED1,FC=0.22,p=0.000681217 MED1,FC=1.27,p=1.48e-10 CRKRS,FC=0.22,p=0.000376458 NEUROD2,FC=-0.25,p=1.74e-06 STARD3,FC=-0.20,p=0.006320739 TCAP,FC=-0.09,p=0.500270418 PNMT,FC=-0.46,p=6.92e-05 PGAP3,FC=0.27,p=0.002905658 PGAP3,FC=-0.07,p=0.27626374 ERBB2,FC=0.57,p=4.18e-06 ERBB2,FC=0.81,p=2.47e-17 GRB7,FC=0.36,p=7.21e-07 IKZF3,FC=0.44,p=0.000569842 GSDMB,FC=1.15,p=3.49e-19 GSDMB,FC=0.01,p=0.932250021 PSMD3,FC=1.13,p=1.59e-43

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-3.36,p=8.3e-45 CCL7,FC=-0.73,p=4.75e-06 CCL11,FC=-1.03,p=3.15e-06 CCL8,FC=-1.35,p=4.2e-30 CCL13,FC=-0.85,p=4.92e-07 CCL1,FC=1.96,p=2.66e-47 CCT6B,FC=-0.12,p=0.048249832 LIG3,FC=3.76,p=4.78e-101 LIG3,FC=-0.12,p=0.227870677 RAD51L3,FC=1.61,p=1.42e-61 RAD51L3,FC=0.55,p=5.99e-10 FNDC8,FC=4.35,p=1.16e-87 NLE1,FC=-2.22,p=6.44e-75 NLE1,FC=2.55,p=2.31e-62 SRCAP,FC=0.63,p=6.49e-16 SLFN12,FC=1.10,p=1.19e-25 PEX12,FC=-1.10,p=3.04e-34 AP2B1,FC=2.91,p=1.13e-120 AP2B1,FC=-0.57,p=2.99e-08 MMP28,FC=-2.21,p=3.24e-37 TAF15,FC=2.85,p=1.57e-95 CCL5,FC=4.41,p=1.01e-119 CCL5,FC=-2.14,p=4.3e-46 LYZL6,FC=-1.31,p=3.38e-28 CCL16,FC=-0.42,p=0.001518837 CCL23,FC=-1.29,p=7.75e-19 CCL23,FC=-0.03,p=0.816378359 CCL18,FC=-0.23,p=0.07243578 CCL18,FC=-4.22,p=1.14e-78 CCL4,FC=-5.43,p=9.68e-84 ZNHIT3,FC=0.36,p=7.99e-16 MYO19,FC=1.69,p=6.97e-60 GGNBP2,FC=-6.27,p=1.32e-100 DHRS11,FC=1.92,p=3.53e-63 MRM1,FC=-0.61,p=4.58e-09 LHX1,FC=2.80,p=4.68e-42 AATF,FC=1.30,p=5.26e-38 ACACA,FC=-6.21,p=6.05e-99 ACACA,FC=0.27,p=0.099672051 TADA2L,FC=1.80,p=2.14e-82 TADA2L,FC=-0.11,p=0.251807541 DUSP14,FC=-0.89,p=8.4e-19 DDX52,FC=4.72,p=1.16e-79 HNF1B,FC=-2.05,p=1.41e-34 HNF1B,FC=-2.34,p=3.13e-74 SOCS7,FC=1.35,p=3.6e-19 PCGF2,FC=-0.18,p=0.002089201 PCGF2,FC=0.62,p=2.53e-11 PCGF2,FC=-1.52,p=1.46e-51 PCGF2,FC=0.55,p=2.41e-15 PSMB3,FC=0.31,p=0.0002962 PIP4K2B,FC=1.37,p=1.92e-35 PIP4K2B,FC=-3.79,p=4e-80 CCDC49,FC=0.05,p=0.248053409 RPL23,FC=-3.76,p=3.82e-165 LASP1,FC=2.03,p=2.53e-127 PLXDC1,FC=1.25,p=6.84e-24 PLXDC1,FC=-1.65,p=2.69e-53 CACNB1,FC=-3.04,p=1.94e-33 CACNB1,FC=2.23,p=8.07e-55 CACNB1,FC=-0.33,p=3.63e-07 RPL19,FC=0.69,p=1.72e-41 MED1,FC=0.77,p=1.46e-18 MED1,FC=5.68,p=5.17e-98 CRKRS,FC=1.67,p=1.51e-50 NEUROD2,FC=1.76,p=8.25e-46 STARD3,FC=0.35,p=1.54e-05 TCAP,FC=2.63,p=4.56e-42 PNMT,FC=-1.27,p=1.4e-15 PGAP3,FC=-0.15,p=0.115484351 PGAP3,FC=-1.93,p=5.28e-68 ERBB2,FC=1.26,p=3.19e-17 ERBB2,FC=-1.85,p=1.33e-60 GRB7,FC=-2.26,p=3.86e-48 IKZF3,FC=0.30,p=0.016852619 GSDMB,FC=0.79,p=1.06e-09 GSDMB,FC=0.95,p=5.33e-16 PSMD3,FC=2.53,p=4.73e-87


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-2.35,p=1.08e-23 CCL7,FC=0.15,p=0.410837122 CCL11,FC=-0.61,p=0.00172359 CCL8,FC=-0.52,p=0.006421649 CCL13,FC=-0.53,p=0.016883256 CCL1,FC=-0.23,p=0.160608261 TMEM132E,FC=0.21,p=0.108873007 C20orf160,FC=0.67,p=1.22e-07 CCT6B,FC=-0.09,p=0.23154215 ZNF830,FC=0.02,p=0.712954623 ZNF830,FC=0.06,p=0.27271588 LIG3,FC=0.36,p=0.033464672 LIG3,FC=0.48,p=6.22e-06 LIG3,FC=0.34,p=0.010789446 RFFL,FC=0.37,p=0.044921666 RFFL,FC=0.60,p=6.84e-05 RFFL,FC=0.94,p=4.19e-07 RFFL,FC=0.03,p=0.669336143 RAD51L3,FC=0.67,p=7.63e-08 RAD51L3,FC=0.35,p=0.001712632 FNDC8,FC=0.18,p=0.266976759 NLE1,FC=0.97,p=1.77e-14 NLE1,FC=0.37,p=0.002644252 UNC45B,FC=-1.02,p=1.99e-07 AMAC1,FC=-0.10,p=0.618200283 SLFN5,FC=-0.04,p=0.838797042 SLFN5,FC=-1.51,p=1.82e-17 SLFN5,FC=-0.04,p=0.813007707 SLFN5,FC=-0.85,p=1.72e-11 SRCAP,FC=0.66,p=5.64e-09 SLFN11,FC=-0.83,p=1.28e-11 SLFN12,FC=-0.29,p=0.019709634 SLFN13,FC=0.97,p=4.3e-10 SLFN13,FC=0.42,p=0.022431439 PEX12,FC=0.10,p=0.170550176 AP2B1,FC=0.77,p=4.97e-18 AP2B1,FC=0.40,p=3.06e-05 RASL10B,FC=0.31,p=0.081513349 RASL10B,FC=0.18,p=0.224394663 GAS2L2,FC=0.53,p=0.002996975 C17orf50,FC=0.26,p=0.130792134 MMP28,FC=-0.99,p=8.47e-07 MMP28,FC=-1.91,p=1.68e-12 MMP28,FC=-1.64,p=3.96e-12 MMP28,FC=-1.15,p=1.29e-10 MMP28,FC=-2.02,p=2.07e-12 TAF15,FC=0.06,p=0.794638009 TAF15,FC=0.62,p=0.000639534 TAF15,FC=0.69,p=1.06e-09 TAF15,FC=-0.18,p=0.194268396 C17orf66,FC=0.67,p=0.000947003 CCL5,FC=-0.56,p=0.000845082 CCL5,FC=-0.56,p=0.003896172 CCL5,FC=-0.83,p=4.8e-05 RDM1,FC=1.41,p=5.27e-13 LYZL6,FC=0.29,p=0.038171907 CCL16,FC=0.03,p=0.89004389 CCL23,FC=-2.29,p=2.13e-22 CCL23,FC=-2.06,p=9.11e-19 CCL18,FC=-0.67,p=0.002112691 CCL18,FC=-0.84,p=0.000321938 CCL4,FC=-0.93,p=2.42e-10 ZNHIT3,FC=0.34,p=2.34e-05 MYO19,FC=0.76,p=2.31e-15 MYO19,FC=0.89,p=1.52e-26 MYO19,FC=0.58,p=6.42e-05 PIGW,FC=0.09,p=0.39116634 GGNBP2,FC=0.14,p=0.42555333 GGNBP2,FC=-0.48,p=3.35e-13 GGNBP2,FC=-0.01,p=0.866501205 GGNBP2,FC=-0.37,p=0.005639263 DHRS11,FC=1.01,p=3.26e-16 MRM1,FC=0.82,p=2.36e-10 LHX1,FC=-0.09,p=0.58920895 AATF,FC=0.57,p=1.41e-18 ACACA,FC=0.19,p=0.039558439 ACACA,FC=0.09,p=0.58033507 C17orf78,FC=0.28,p=0.183181098 TADA2L,FC=0.31,p=0.002665645 TADA2L,FC=0.61,p=0.002134106 DUSP14,FC=-0.03,p=0.757632111 SYNRG,FC=0.25,p=0.000157198 SYNRG,FC=0.76,p=0.000322691 SYNRG,FC=0.47,p=5.24e-06 SYNRG,FC=0.30,p=0.009196104 SYNRG,FC=-0.29,p=0.052543817 DDX52,FC=-0.28,p=0.216981544 DDX52,FC=0.63,p=4.43e-15 HNF1B,FC=-0.52,p=0.014816466 HNF1B,FC=-0.03,p=0.860705897 LOC284100,FC=0.96,p=7.67e-09 MRPL45,FC=0.46,p=4.59e-12 SOCS7,FC=1.22,p=5.37e-14 ARHGAP23,FC=-0.95,p=4.03e-15 ARHGAP23,FC=0.38,p=0.038874562 ARHGAP23,FC=-0.21,p=0.215266554 SNIP,FC=0.57,p=0.002018421 SNIP,FC=1.03,p=2.09e-06 MLLT6,FC=0.53,p=1.03e-05 MLLT6,FC=0.73,p=3.81e-05 CISD3,FC=0.17,p=0.09951083 CISD3,FC=0.35,p=4.42e-07 PCGF2,FC=0.02,p=0.804163947 PCGF2,FC=0.64,p=2.57e-07 PCGF2,FC=0.16,p=0.057813857 PCGF2,FC=0.04,p=0.668174236 PSMB3,FC=0.59,p=7.13e-14 PIP4K2B,FC=0.41,p=0.009057511 PIP4K2B,FC=1.09,p=3.96e-14 PIP4K2B,FC=-0.02,p=0.718662922 PIP4K2B,FC=0.53,p=1.22e-08 CCDC49,FC=-0.38,p=2.68e-05 CCDC49,FC=0.02,p=0.729752842 C17orf98,FC=0.31,p=0.08544127 RPL23,FC=0.02,p=0.800132381 LASP1,FC=0.36,p=1.25e-05 PLXDC1,FC=0.22,p=0.050711703 PLXDC1,FC=0.02,p=0.802532444 ARL5C,FC=0.31,p=0.073887416 CACNB1,FC=0.65,p=5.23e-05 CACNB1,FC=-0.02,p=0.883468593 CACNB1,FC=0.24,p=0.116875383 RPL19,FC=-0.10,p=0.022445439 STAC2,FC=0.69,p=0.000178358 FBXL20,FC=0.22,p=0.280018569 FBXL20,FC=0.98,p=1.19e-24 FBXL20,FC=0.40,p=0.000392045 MED1,FC=-0.07,p=0.299048364 MED1,FC=0.56,p=1.53e-12 MED1,FC=0.04,p=0.639286307 MED1,FC=0.09,p=0.55040731 CRKRS,FC=0.26,p=7.37e-05 CRKRS,FC=0.16,p=0.064524795 CRKRS,FC=-0.05,p=0.526922151 CRKRS,FC=0.41,p=5.43e-08 CRKRS,FC=0.05,p=0.627785781 NEUROD2,FC=0.05,p=0.751676321 NEUROD2,FC=0.26,p=0.073194834 PPP1R1B,FC=0.31,p=0.229628521 STARD3,FC=0.02,p=0.781541592 TCAP,FC=0.29,p=0.066140129 PNMT,FC=-0.38,p=0.012083328 PGAP3,FC=0.44,p=1.19e-05 PGAP3,FC=0.39,p=0.000399172 ERBB2,FC=0.88,p=8.24e-07 ERBB2,FC=0.97,p=6.4e-06 ERBB2,FC=0.81,p=9.89e-11 C17orf37,FC=0.46,p=3.6e-09 GRB7,FC=1.11,p=2.52e-16 IKZF3,FC=1.26,p=5.98e-09 ZPBP2,FC=-0.33,p=0.124825893 GSDMB,FC=0.96,p=1.24e-10 GSDMB,FC=-0.37,p=0.112434073 ORMDL3,FC=-0.00,p=0.980290083 ORMDL3,FC=1.08,p=7.22e-05 PSMD3,FC=0.29,p=0.002524558

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-3.17,p=3.48e-19 CCL7,FC=-0.28,p=0.165711394 CCL11,FC=-0.15,p=0.479259513 CCL8,FC=-1.22,p=2.74e-07 CCL13,FC=-1.48,p=2.61e-09 CCL1,FC=-0.36,p=0.057771402 TMEM132E,FC=0.15,p=0.181649098 C20orf160,FC=1.21,p=1.36e-14 CCT6B,FC=0.17,p=0.043716268 ZNF830,FC=0.00,p=0.968140637 ZNF830,FC=0.10,p=0.037909897 LIG3,FC=0.53,p=0.009166683 LIG3,FC=0.91,p=4.48e-14 LIG3,FC=0.64,p=1.26e-06 RFFL,FC=0.08,p=0.722023992 RFFL,FC=0.62,p=0.000519234 RFFL,FC=1.30,p=1.4e-07 RFFL,FC=-0.07,p=0.461559251 RAD51L3,FC=1.11,p=7.54e-15 RAD51L3,FC=0.55,p=8.51e-06 FNDC8,FC=-0.04,p=0.803888747 NLE1,FC=1.02,p=2.71e-10 NLE1,FC=0.59,p=1.41e-05 UNC45B,FC=-0.88,p=0.0001701 AMAC1,FC=0.33,p=0.152414961 SLFN5,FC=-0.71,p=0.000164959 SLFN5,FC=-1.87,p=1.58e-16 SLFN5,FC=-0.77,p=4.86e-05 SLFN5,FC=-1.11,p=1.72e-14 SRCAP,FC=0.57,p=5.38e-06 SLFN11,FC=-1.53,p=5e-20 SLFN12,FC=-1.00,p=1.48e-09 SLFN13,FC=-0.01,p=0.941902554 SLFN13,FC=-0.97,p=0.000138519 PEX12,FC=-0.05,p=0.526720601 AP2B1,FC=0.90,p=5.13e-19 AP2B1,FC=0.06,p=0.564087209 RASL10B,FC=0.60,p=0.00122579 RASL10B,FC=0.31,p=0.048288688 GAS2L2,FC=1.13,p=2.13e-08 C17orf50,FC=0.30,p=0.10715006 MMP28,FC=-1.42,p=1.05e-15 MMP28,FC=-3.02,p=2.18e-26 MMP28,FC=-2.48,p=4.12e-30 MMP28,FC=-1.52,p=6.07e-15 MMP28,FC=-3.14,p=4.91e-24 TAF15,FC=-0.61,p=0.005702726 TAF15,FC=0.50,p=2.2e-05 TAF15,FC=0.67,p=1.95e-06 TAF15,FC=-0.45,p=0.000387959 C17orf66,FC=1.54,p=2.54e-11 CCL5,FC=-0.97,p=2.25e-06 CCL5,FC=-0.87,p=0.0007725 CCL5,FC=-1.89,p=5.17e-10 RDM1,FC=1.14,p=9.81e-07 LYZL6,FC=0.55,p=0.001291595 CCL16,FC=0.14,p=0.569925044 CCL23,FC=-3.25,p=7.88e-30 CCL23,FC=-2.61,p=1.29e-21 CCL18,FC=-1.14,p=6.36e-05 CCL18,FC=-1.09,p=8.67e-05 CCL4,FC=-1.43,p=7.66e-12 ZNHIT3,FC=0.26,p=0.003725363 MYO19,FC=1.33,p=3.15e-26 MYO19,FC=1.25,p=2.66e-33 MYO19,FC=0.57,p=7.85e-05 PIGW,FC=0.17,p=0.191313014 GGNBP2,FC=0.31,p=0.106342358 GGNBP2,FC=-0.53,p=3.23e-10 GGNBP2,FC=0.07,p=0.204926794 GGNBP2,FC=-0.62,p=5.21e-08 DHRS11,FC=0.86,p=1.55e-10 MRM1,FC=0.79,p=4.46e-06 LHX1,FC=-0.17,p=0.378064903 AATF,FC=0.78,p=9.89e-20 ACACA,FC=0.28,p=0.002845584 ACACA,FC=0.28,p=0.173422475 C17orf78,FC=0.64,p=0.009681813 TADA2L,FC=0.52,p=8.46e-06 TADA2L,FC=0.66,p=0.001860309 DUSP14,FC=0.74,p=1.01e-08 SYNRG,FC=-0.15,p=0.099511332 SYNRG,FC=0.84,p=0.000109787 SYNRG,FC=0.42,p=9.12e-06 SYNRG,FC=-0.10,p=0.461477342 SYNRG,FC=-0.55,p=0.00065179 DDX52,FC=-0.32,p=0.186125409 DDX52,FC=0.44,p=2.34e-06 HNF1B,FC=-1.67,p=1.01e-16 HNF1B,FC=-1.57,p=3.19e-16 LOC284100,FC=1.18,p=7.66e-08 MRPL45,FC=0.54,p=2.2e-11 SOCS7,FC=1.52,p=1.03e-12 ARHGAP23,FC=0.38,p=0.008284797 ARHGAP23,FC=0.96,p=2.03e-05 ARHGAP23,FC=0.31,p=0.025264769 SNIP,FC=1.10,p=1.47e-07 SNIP,FC=0.65,p=0.006227189 MLLT6,FC=0.76,p=9.6e-06 MLLT6,FC=1.34,p=1.24e-10 CISD3,FC=0.63,p=6.13e-07 CISD3,FC=0.13,p=0.089987821 PCGF2,FC=0.33,p=0.001216293 PCGF2,FC=1.16,p=3.67e-12 PCGF2,FC=0.46,p=3.15e-07 PCGF2,FC=-0.03,p=0.734058706 PSMB3,FC=0.59,p=3e-13 PIP4K2B,FC=1.16,p=2.63e-13 PIP4K2B,FC=1.48,p=7.75e-15 PIP4K2B,FC=-0.04,p=0.593744214 PIP4K2B,FC=0.58,p=2.71e-08 CCDC49,FC=-0.36,p=0.000497801 CCDC49,FC=0.32,p=3.48e-05 C17orf98,FC=0.23,p=0.24425396 RPL23,FC=0.08,p=0.313475518 LASP1,FC=0.20,p=0.011431066 PLXDC1,FC=0.24,p=0.015533169 PLXDC1,FC=-0.11,p=0.256212066 ARL5C,FC=0.83,p=8.04e-05 CACNB1,FC=0.70,p=9.84e-05 CACNB1,FC=-0.07,p=0.637060442 CACNB1,FC=0.39,p=0.034893434 RPL19,FC=-0.13,p=0.006953508 STAC2,FC=1.37,p=2.41e-10 FBXL20,FC=-0.49,p=0.017221033 FBXL20,FC=1.09,p=1.11e-24 FBXL20,FC=0.18,p=0.085396943 MED1,FC=-0.28,p=0.00151552 MED1,FC=0.55,p=6.03e-11 MED1,FC=-0.18,p=0.100813032 MED1,FC=-0.29,p=0.11731242 CRKRS,FC=0.31,p=5.8e-06 CRKRS,FC=0.38,p=5.1e-05 CRKRS,FC=-0.17,p=0.072453284 CRKRS,FC=0.67,p=4.43e-15 CRKRS,FC=-0.34,p=0.010114941 NEUROD2,FC=0.62,p=0.003007427 NEUROD2,FC=0.63,p=9.04e-05 PPP1R1B,FC=-0.96,p=0.000218099 STARD3,FC=-0.26,p=0.086941571 TCAP,FC=0.36,p=0.041853271 PNMT,FC=-0.35,p=0.044595615 PGAP3,FC=0.23,p=0.115898329 PGAP3,FC=0.37,p=0.002291063 ERBB2,FC=0.30,p=0.150421454 ERBB2,FC=0.51,p=0.038883055 ERBB2,FC=0.13,p=0.333639515 C17orf37,FC=0.62,p=6.43e-10 GRB7,FC=1.00,p=1.95e-07 IKZF3,FC=1.04,p=6.57e-05 ZPBP2,FC=-0.25,p=0.25571743 GSDMB,FC=0.58,p=7.28e-06 GSDMB,FC=-0.88,p=4.34e-05 ORMDL3,FC=-0.31,p=9.5e-05 ORMDL3,FC=-0.26,p=0.385925185 PSMD3,FC=0.94,p=1.15e-16


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCT6B,FC=-0.37,p=0.305537268 LIG3,FC=1.27,p=0.001695133 LIG3,FC=0.95,p=1.85e-06 RAD51L3,FC=1.09,p=0.000193285 PEX12,FC=0.42,p=0.043087002 AP2B1,FC=0.33,p=0.375356277 ACACA,FC=0.20,p=0.325008453 MLLT6,FC=0.24,p=0.513953236 MLLT6,FC=1.02,p=0.005037386 PSMB3,FC=0.62,p=0.014455096 RPL23,FC=-0.16,p=0.524627093 CACNB1,FC=0.33,p=0.539451426 CACNB1,FC=0.44,p=0.236260448 RPL19,FC=-0.35,p=0.326593658 CrkRS,FC=0.35,p=0.083856774 CrkRS,FC=0.45,p=0.046532898 PNMT,FC=0.14,p=0.659870104 ERBB2,FC=1.25,p=0.00065705 ERBB2,FC=0.00,p=0 ERBB2,FC=0.84,p=0.00594748 ERBB2,FC=0.92,p=0.00589906 GRB7,FC=1.30,p=0.000602256 GRB7,FC=1.18,p=0.001868163 PSMD3,FC=1.56,p=0.00021545

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCT6B,FC=-0.10,p=0.791931849 LIG3,FC=1.14,p=0.005546003 LIG3,FC=1.06,p=0.000514925 RAD51L3,FC=1.05,p=0.001396864 PEX12,FC=0.32,p=0.209349901 AP2B1,FC=0.48,p=0.105092275 ACACA,FC=-0.17,p=0.466905532 MLLT6,FC=-0.15,p=0.73744783 MLLT6,FC=0.02,p=0.969566909 PSMB3,FC=0.73,p=0.003788871 RPL23,FC=0.08,p=0.804612692 CACNB1,FC=-0.72,p=0.077244404 CACNB1,FC=0.52,p=0.2349831 RPL19,FC=-0.10,p=0.848886304 CrkRS,FC=0.30,p=0.318871813 CrkRS,FC=0.51,p=0.088592429 PNMT,FC=0.38,p=0.447591805 ERBB2,FC=0.39,p=0.551736291 ERBB2,FC=0.00,p=0 ERBB2,FC=-0.49,p=0.182053814 ERBB2,FC=-0.42,p=0.200996291 GRB7,FC=0.68,p=0.085734792 GRB7,FC=0.52,p=0.251908548 PSMD3,FC=1.29,p=0.000330752


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-0.76,p=2.6e-09 CCL7,FC=0.11,p=0.309983887 CCL7,FC=0.00,p=0.931779824 CCL11,FC=-0.24,p=0.000141746 CCL8,FC=-0.00,p=0.994698195 CCL8,FC=-0.22,p=0.014233474 CCL13,FC=-0.30,p=0.047362262 CCL1,FC=0.04,p=0.706570552 C20orf160,FC=-0.94,p=7.05e-18 CCT6B,FC=0.39,p=2.87e-07 LIG3,FC=0.02,p=0.617575129 RAD51L3,FC=-0.01,p=0.749973076 PEX12,FC=0.00,p=0.99761764 AP2B1,FC=-0.06,p=0.385842664 RASL10B,FC=-0.03,p=0.092966811 GAS2L2,FC=-0.01,p=0.796374533 MMP28,FC=-0.38,p=0.015407358 TAF15,FC=0.04,p=0.5151115 TAF15,FC=0.02,p=0.635825049 CCL5,FC=-0.17,p=6e-07 LYZL6,FC=0.08,p=0.002337208 CCL16,FC=-0.01,p=0.896366481 CCL23,FC=-0.09,p=0.047396191 CCL18,FC=-0.11,p=0.347086823 CCL4,FC=0.07,p=0.679106485 LHX1,FC=-0.08,p=0.278669488 AATF,FC=-0.09,p=0.086930154 ACACA,FC=-0.02,p=0.298788329 TADA2L,FC=0.09,p=0.125467675 DUSP14,FC=-0.03,p=0.219583717 DDX52,FC=0.14,p=0.00148657 MRPL45,FC=0.04,p=0.545693138 SOCS7,FC=-0.05,p=0.567356292 SOCS7,FC=0.04,p=0.517444559 ARHGAP23,FC=0.15,p=0.002829651 MLLT6,FC=-0.05,p=0.479368313 MLLT6,FC=-0.03,p=0.221662484 PSMB3,FC=-0.00,p=0.958767957 RPL23,FC=0.34,p=0.000145742 LASP1,FC=-0.06,p=0.239423881 PLXDC1,FC=-0.10,p=0.142741692 CACNB1,FC=0.02,p=0.584492518 RPL19,FC=0.06,p=0.396465049 RPL19,FC=0.16,p=0.022428621 STAC2,FC=-0.13,p=0.041202528 NEUROD2,FC=0.04,p=0.456785709 PPP1R1B,FC=0.08,p=0.218403521 STARD3,FC=-0.10,p=0.006435125 TCAP,FC=-0.01,p=0.804522731 PNMT,FC=-0.27,p=0.000156719 C17orf37,FC=0.07,p=0.333054309 GRB7,FC=0.04,p=0.386919133 ZPBP2,FC=0.03,p=0.587505963 ORMDL3,FC=-0.02,p=0.532861749 ORMDL3,FC=0.02,p=0.35572918 PSMD3,FC=-0.15,p=0.001125188

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CCL2,FC=-0.86,p=2.35e-10 CCL7,FC=0.07,p=0.417124386 CCL7,FC=0.01,p=0.738122253 CCL11,FC=-0.18,p=0.003752769 CCL8,FC=-0.01,p=0.702656185 CCL8,FC=-0.23,p=0.000513832 CCL13,FC=-0.48,p=0.000131463 CCL1,FC=0.05,p=0.607643908 C20orf160,FC=-0.98,p=6.34e-15 CCT6B,FC=0.43,p=1.38e-08 LIG3,FC=0.02,p=0.570189928 RAD51L3,FC=0.00,p=0.933845802 PEX12,FC=-0.02,p=0.661685311 AP2B1,FC=-0.00,p=0.95999436 RASL10B,FC=-0.04,p=0.015216291 GAS2L2,FC=-0.03,p=0.467533046 MMP28,FC=-0.67,p=1.82e-08 TAF15,FC=0.03,p=0.570064395 TAF15,FC=0.01,p=0.65022636 CCL5,FC=-0.18,p=2.59e-05 LYZL6,FC=0.07,p=0.008957703 CCL16,FC=-0.01,p=0.884741125 CCL23,FC=-0.11,p=0.02296442 CCL18,FC=-0.16,p=0.179466687 CCL4,FC=0.07,p=0.66964005 LHX1,FC=-0.04,p=0.574484824 AATF,FC=-0.01,p=0.837125979 ACACA,FC=-0.02,p=0.408655219 TADA2L,FC=0.12,p=0.034234951 DUSP14,FC=0.01,p=0.56648389 DDX52,FC=0.16,p=0.000218155 MRPL45,FC=0.07,p=0.304096481 SOCS7,FC=-0.04,p=0.67534445 SOCS7,FC=0.06,p=0.225531439 ARHGAP23,FC=0.17,p=4.73e-05 MLLT6,FC=-0.25,p=0.000554075 MLLT6,FC=-0.04,p=0.083617164 PSMB3,FC=0.10,p=0.062870052 RPL23,FC=0.36,p=6.68e-05 LASP1,FC=-0.15,p=0.000872538 PLXDC1,FC=-0.20,p=0.001749144 CACNB1,FC=0.03,p=0.252700823 RPL19,FC=0.11,p=0.092321444 RPL19,FC=0.15,p=0.035743632 STAC2,FC=-0.15,p=0.010697649 NEUROD2,FC=0.03,p=0.485210996 PPP1R1B,FC=-0.03,p=0.118586423 STARD3,FC=-0.10,p=0.000861736 TCAP,FC=0.11,p=0.032151216 PNMT,FC=-0.35,p=1.27e-13 C17orf37,FC=0.10,p=0.002238887 GRB7,FC=0.02,p=0.252184297 ZPBP2,FC=0.02,p=0.540573341 ORMDL3,FC=-0.07,p=0.006994168 ORMDL3,FC=0.01,p=0.376380343 PSMD3,FC=-0.08,p=0.139410382


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

CCL2,FC=-0.66,p=0.000185509 CCL7,FC=-0.01,p=0.974881977 CCL11,FC=-0.45,p=0.001998487 CCL8,FC=-0.08,p=0.584024902 CCL13,FC=-0.24,p=0.090884034 CCL1,FC=-0.72,p=3.74e-22 CCT6B,FC=-0.27,p=1.2e-05 LIG3,FC=0.73,p=2.68e-08 LIG3,FC=0.35,p=4.83e-07 RAD51L3,FC=-0.11,p=0.045900102 RAD51L3,FC=-0.36,p=3.6e-06 FNDC8,FC=0.07,p=0.509966402 NLE1,FC=-0.08,p=0.294129518 NLE1,FC=1.26,p=1.52e-19 SRCAP,FC=0.06,p=0.437041661 SLFN12,FC=0.12,p=0.26972014 PEX12,FC=-0.65,p=8.31e-20 AP2B1,FC=0.65,p=2.16e-17 AP2B1,FC=0.49,p=1.48e-07 MMP28,FC=-1.91,p=1.17e-13 TAF15,FC=0.91,p=2.13e-28 CCL5,FC=-0.66,p=0.000374865 CCL5,FC=-0.50,p=4.92e-05 LYZL6,FC=-0.33,p=1.47e-06 CCL16,FC=-0.72,p=5.3e-08 CCL23,FC=-1.59,p=3.21e-19 CCL23,FC=-1.50,p=3.81e-16 CCL18,FC=-0.96,p=2.54e-07 CCL18,FC=-0.80,p=1.69e-05 CCL4,FC=-1.14,p=1.81e-18 ZNHIT3,FC=0.15,p=0.001618254 MYO19,FC=-0.33,p=1.16e-06 GGNBP2,FC=-0.12,p=0.010696877 DHRS11,FC=0.80,p=2.75e-15 MRM1,FC=0.02,p=0.821387939 LHX1,FC=0.29,p=0.054652016 AATF,FC=0.13,p=0.027405503 ACACA,FC=0.19,p=0.056078946 ACACA,FC=0.82,p=4.36e-06 TADA2L,FC=-0.36,p=0.000135615 TADA2L,FC=1.16,p=3.85e-18 DUSP14,FC=-0.27,p=0.000315942 DDX52,FC=0.13,p=0.01434333 HNF1B,FC=-0.44,p=0.004331234 HNF1B,FC=-0.24,p=0.033223274 SOCS7,FC=0.33,p=0.012947489 PCGF2,FC=-0.31,p=1.47e-05 PCGF2,FC=0.19,p=0.017614801 PCGF2,FC=-0.52,p=2.43e-14 PCGF2,FC=-0.51,p=1.97e-15 PSMB3,FC=0.51,p=1.16e-18 PIP4K2B,FC=0.55,p=6.4e-09 PIP4K2B,FC=-0.43,p=6.96e-16 CCDC49,FC=-0.47,p=3.98e-21 RPL23,FC=-0.23,p=1.16e-08 LASP1,FC=0.12,p=0.041818394 PLXDC1,FC=-0.04,p=0.583197867 PLXDC1,FC=0.23,p=0.005097485 CACNB1,FC=-0.70,p=2.02e-11 CACNB1,FC=-1.07,p=2.3e-20 CACNB1,FC=-0.45,p=9.09e-05 RPL19,FC=-0.01,p=0.621690752 MED1,FC=0.24,p=0.001296045 MED1,FC=2.53,p=1.59e-36 CRKRS,FC=0.29,p=3.06e-06 NEUROD2,FC=-0.78,p=9.97e-15 STARD3,FC=-0.22,p=0.000360607 TCAP,FC=0.05,p=0.75609237 PNMT,FC=-1.15,p=7.94e-15 PGAP3,FC=0.37,p=2.11e-05 PGAP3,FC=-0.03,p=0.66224627 ERBB2,FC=1.00,p=6.1e-15 ERBB2,FC=0.82,p=3.62e-19 GRB7,FC=0.15,p=0.047574003 IKZF3,FC=0.76,p=2.01e-07 GSDMB,FC=1.24,p=1.54e-16 GSDMB,FC=0.22,p=0.027173811 PSMD3,FC=1.09,p=8.63e-39

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-139K6, 2/50, 0.04 RP11-139K6, 3/50, 0.06 RP11-215E13, 5/50, 0.1 RP11-215E13, 0/50, 0 RP5-837J1, 7/50, 0.14 RP5-837J1, 2/50, 0.04 RP11-47L3, 13/50, 0.26 RP11-47L3, 1/50, 0.02 RP11-445F12, 17/50, 0.34 RP11-445F12, 10/50, 0.2 RP5-986F12, 9/50, 0.18 RP5-986F12, 3/50, 0.06 RP11-115K3, 14/50, 0.28 RP11-115K3, 3/50, 0.06 RP5-906A24, 21/50, 0.42 RP5-906A24, 3/50, 0.06 RP11-390P24, 23/50, 0.46 RP11-390P24, 0/50, 0 RP11-94L15, 13/50, 0.26 RP11-94L15, 5/50, 0.1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12599234 PMID=15093586 PMID=16322280

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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