IGDB.NSCLC Chromosome View

Chromosome 17
17p13 17p12 17p11 17q11 17q12 17q21 17q22 17q23 17q24 17q25         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , MAP3K3, 1.49%, 3/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CLTC,FC=0.17,p=0.012986465 RPS6KB1,FC=0.31,p=0.017170589 RPS6KB1,FC=0.18,p=0.500224457 RPS6KB1,FC=0.31,p=0.140382014 CA4,FC=-2.58,p=3.18e-39 ARL2BP,FC=-0.34,p=9.76e-06 APPBP2,FC=-0.48,p=0.000801698 APPBP2,FC=-0.44,p=0.0069807 PPM1D,FC=-0.51,p=9.64e-11 TBX2,FC=-2.86,p=1.89e-26 MED13,FC=-0.22,p=0.072800973 TLK2,FC=0.13,p=0.107758455 MRC2,FC=-0.40,p=0.000528328 TANC2,FC=0.64,p=9.09e-10 CYB561,FC=0.05,p=0.775928153 ACE,FC=-1.29,p=9.29e-12 MAP3K3,FC=-0.35,p=0.00305428 DDX42,FC=0.22,p=0.004753811 PSMC5,FC=-0.00,p=0.965749315 SMARCD2,FC=-0.04,p=0.670846136 SMARCD2,FC=0.36,p=3.28e-05 SMARCD2,FC=-0.02,p=0.804299509 GH2,FC=-0.15,p=0.330295852 GH2,FC=0.40,p=0.039905512 GH2,FC=0.67,p=7.47e-06 CSHL1,FC=-0.90,p=9.94e-05 CSHL1,FC=0.16,p=0.352659805 CSHL1,FC=0.32,p=0.001709425 CD79B,FC=0.49,p=0.007181729 SCN4A,FC=0.60,p=6.59e-10 ICAM2,FC=-1.37,p=1.07e-30 ICAM2,FC=-1.48,p=2.12e-24 ICAM2,FC=-1.78,p=2.09e-31 ERN1,FC=0.38,p=0.031655462 PECAM1,FC=-1.42,p=2.72e-41 PECAM1,FC=-2.17,p=5.01e-43 PECAM1,FC=-2.06,p=2.03e-36

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CLTC,FC=0.10,p=0.245207119 RPS6KB1,FC=0.24,p=0.229827704 RPS6KB1,FC=0.08,p=0.819029919 RPS6KB1,FC=0.48,p=0.085048453 CA4,FC=-2.63,p=3e-21 ARL2BP,FC=-0.26,p=0.018356351 APPBP2,FC=-0.40,p=0.007850793 APPBP2,FC=-0.84,p=4.05e-05 PPM1D,FC=-0.31,p=0.002348642 TBX2,FC=-3.38,p=4.58e-22 MED13,FC=-0.28,p=0.017826829 TLK2,FC=0.28,p=0.008405815 MRC2,FC=-0.59,p=5.83e-06 TANC2,FC=0.46,p=0.001713781 CYB561,FC=-0.15,p=0.585654224 ACE,FC=-1.59,p=1.6e-09 MAP3K3,FC=-0.40,p=0.051139238 DDX42,FC=0.10,p=0.236411391 PSMC5,FC=-0.02,p=0.833110754 SMARCD2,FC=0.32,p=0.006590277 SMARCD2,FC=0.77,p=3.55e-10 SMARCD2,FC=0.08,p=0.347056109 GH2,FC=-0.35,p=0.109589242 GH2,FC=0.57,p=0.029045917 GH2,FC=0.92,p=4.56e-06 CSHL1,FC=-0.62,p=0.093253339 CSHL1,FC=0.21,p=0.414205794 CSHL1,FC=0.45,p=0.00042842 CD79B,FC=0.60,p=0.001949045 SCN4A,FC=0.57,p=2.51e-05 ICAM2,FC=-1.92,p=1.8e-21 ICAM2,FC=-2.02,p=1.11e-20 ICAM2,FC=-2.34,p=5.82e-23 ERN1,FC=0.33,p=0.175959191 PECAM1,FC=-1.83,p=6.62e-30 PECAM1,FC=-2.77,p=1.31e-28 PECAM1,FC=-2.57,p=1.73e-28


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DHX40,FC=0.22,p=0.000738268 CLTC,FC=0.29,p=4.12e-09 CLTC,FC=-0.05,p=0.719474995 PTRH2,FC=0.60,p=3.03e-24 IL6ST,FC=-0.57,p=8.19e-10 TUBD1,FC=0.05,p=0.511794215 TUBD1,FC=-0.09,p=0.076337415 RPS6KB1,FC=0.28,p=8.37e-05 RPS6KB1,FC=0.84,p=7.25e-11 RNFT1,FC=0.52,p=1.57e-11 RNFT1,FC=0.67,p=0.000304481 HEATR6,FC=0.40,p=0.000162561 HEATR6,FC=0.34,p=5.09e-11 CA4,FC=-3.85,p=3.23e-84 CA4,FC=-3.28,p=8.04e-172 USP32,FC=0.33,p=1.01e-10 ARL2BP,FC=-0.27,p=0.000345512 APPBP2,FC=0.03,p=0.594132246 APPBP2,FC=0.27,p=5.77e-06 APPBP2,FC=0.21,p=0.157531588 APPBP2,FC=-0.41,p=5.42e-08 PPM1D,FC=-0.72,p=3.25e-40 BCAS3,FC=-0.44,p=1.29e-16 TBX2,FC=-2.17,p=3.43e-55 TBX2,FC=-1.35,p=4.94e-29 TBX2,FC=-2.23,p=5.4e-80 TBX4,FC=-1.79,p=2.22e-37 NACA2,FC=0.10,p=0.50194291 BRIP1,FC=0.71,p=8.12e-07 MED13,FC=-0.27,p=4.45e-05 MED13,FC=0.03,p=0.64451763 TLK2,FC=0.11,p=0.000660281 TLK2,FC=0.44,p=1.99e-14 MRC2,FC=0.49,p=2.96e-08 MRC2,FC=-0.66,p=3.6e-16 TANC2,FC=0.93,p=1.07e-08 CYB561,FC=0.36,p=9.62e-08 CYB561,FC=0.34,p=5.98e-07 CYB561,FC=0.38,p=5.52e-08 CYB561,FC=0.28,p=5.6e-06 CYB561,FC=0.54,p=2.34e-17 ACE,FC=-1.11,p=6.79e-17 KCNH6,FC=-0.02,p=0.888070884 KCNH6,FC=-0.13,p=0.380677153 KCNH6,FC=0.02,p=0.871035975 DCAF7,FC=0.54,p=3.43e-10 DCAF7,FC=0.18,p=0.000914972 DCAF7,FC=0.00,p=0.960975203 TACO1,FC=0.40,p=3.84e-13 MAP3K3,FC=-0.30,p=0.00012401 LIMD2,FC=1.18,p=9.12e-16 STRADA,FC=0.01,p=0.878903342 STRADA,FC=-0.17,p=5.03e-05 CCDC47,FC=0.58,p=6.06e-12 DDX42,FC=0.03,p=0.565498531 FTSJ3,FC=0.19,p=5.65e-05 PSMC5,FC=0.35,p=2.39e-14 SMARCD2,FC=0.41,p=3.51e-10 CSH2,FC=-0.33,p=8.91e-07 CSH2,FC=-0.90,p=1.85e-12 CSH2,FC=-0.15,p=0.002144978 GH2,FC=-0.38,p=1.35e-06 GH2,FC=0.13,p=0.345569675 CSH1,FC=0.21,p=1.7e-05 CSH1,FC=-0.09,p=0.082488785 CSH1,FC=-0.06,p=0.258592158 CSH1,FC=-0.18,p=0.001058207 CSH1,FC=0.22,p=0.00015157 CSH1,FC=-0.42,p=1.63e-06 CSHL1,FC=0.13,p=0.268934244 CSHL1,FC=0.06,p=0.687121153 CSHL1,FC=-0.14,p=0.060720638 CSHL1,FC=0.02,p=0.896096796 CSHL1,FC=-0.20,p=0.009483809 GH1,FC=-0.84,p=2.31e-17 GH1,FC=-0.58,p=1.03e-06 GH1,FC=-0.57,p=1.58e-07 GH1,FC=-0.54,p=1.27e-11 CD79B,FC=1.07,p=4.63e-11 SCN4A,FC=-0.12,p=0.344265741 ICAM2,FC=-1.50,p=2.13e-55 ICAM2,FC=-1.51,p=1.42e-47 ERN1,FC=-0.06,p=0.242601096 TEX2,FC=-0.55,p=2.67e-22 PECAM1,FC=-1.78,p=2.7e-36 PECAM1,FC=-2.37,p=3.56e-111 PECAM1,FC=-1.92,p=1.89e-105 C17orf60,FC=0.80,p=3.79e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DHX40,FC=0.52,p=1.1e-18 CLTC,FC=-1.77,p=2.62e-89 CLTC,FC=1.91,p=8.42e-32 PTRH2,FC=2.06,p=2.33e-94 IL6ST,FC=-4.99,p=3.72e-95 TUBD1,FC=-1.01,p=1.57e-17 TUBD1,FC=-0.37,p=1.26e-05 RPS6KB1,FC=-0.72,p=8.14e-14 RPS6KB1,FC=4.83,p=6.36e-109 RNFT1,FC=0.58,p=2.22e-10 RNFT1,FC=1.11,p=7.35e-11 HEATR6,FC=3.25,p=3.23e-78 HEATR6,FC=-2.02,p=2.23e-51 CA4,FC=-1.31,p=1.76e-20 CA4,FC=-2.88,p=8.56e-52 USP32,FC=-5.50,p=1.55e-135 ARL2BP,FC=7.79,p=6.25e-212 APPBP2,FC=2.00,p=9.03e-77 APPBP2,FC=3.77,p=3.66e-123 APPBP2,FC=1.81,p=7.31e-27 APPBP2,FC=1.34,p=3.11e-50 PPM1D,FC=1.59,p=6.7e-44 BCAS3,FC=-4.96,p=1.86e-66 TBX2,FC=-1.17,p=1.24e-20 TBX2,FC=1.44,p=6.21e-20 TBX2,FC=-5.75,p=6.76e-102 TBX4,FC=2.40,p=4.54e-58 NACA2,FC=1.54,p=8.86e-19 BRIP1,FC=0.62,p=4.61e-05 MED13,FC=-0.39,p=6.57e-05 MED13,FC=-0.53,p=7.82e-18 TLK2,FC=-0.73,p=0.00127164 TLK2,FC=2.78,p=1.54e-113 MRC2,FC=4.61,p=6.79e-122 MRC2,FC=-1.95,p=2.32e-74 TANC2,FC=1.82,p=2.82e-40 CYB561,FC=-2.67,p=1.34e-66 CYB561,FC=0.89,p=1.42e-35 CYB561,FC=-4.79,p=4.75e-120 CYB561,FC=0.65,p=7.61e-15 CYB561,FC=2.33,p=2.19e-123 ACE,FC=2.06,p=4.12e-34 KCNH6,FC=3.15,p=2e-48 KCNH6,FC=5.54,p=7.71e-105 KCNH6,FC=2.20,p=7.1e-39 DCAF7,FC=2.42,p=9.71e-87 DCAF7,FC=-3.49,p=5.66e-62 DCAF7,FC=-2.60,p=1.19e-71 TACO1,FC=-2.76,p=6.59e-61 MAP3K3,FC=-0.17,p=0.058093133 LIMD2,FC=3.45,p=7.86e-66 STRADA,FC=-2.56,p=3.39e-56 STRADA,FC=-4.13,p=5.03e-94 CCDC47,FC=-1.91,p=6.75e-56 DDX42,FC=-1.08,p=8.96e-38 FTSJ3,FC=-2.56,p=9.1e-102 PSMC5,FC=-1.13,p=1.06e-19 SMARCD2,FC=2.62,p=3.77e-51 CSH2,FC=10.68,p=8.65e-226 CSH2,FC=-2.06,p=4.29e-36 CSH2,FC=0.31,p=0.001269163 GH2,FC=4.53,p=7.47e-71 GH2,FC=0.47,p=0.001431279 CSH1,FC=2.01,p=4.55e-37 CSH1,FC=2.41,p=2.16e-58 CSH1,FC=8.15,p=1.4e-136 CSH1,FC=2.37,p=2.95e-86 CSH1,FC=2.42,p=9.78e-52 CSH1,FC=0.92,p=1.01e-15 CSHL1,FC=1.45,p=7.1e-39 CSHL1,FC=-2.28,p=4.29e-55 CSHL1,FC=0.90,p=2.73e-08 CSHL1,FC=6.73,p=4.43e-132 CSHL1,FC=-0.19,p=0.235425336 GH1,FC=0.92,p=1.52e-08 GH1,FC=1.79,p=2.48e-28 GH1,FC=0.65,p=1.08e-05 GH1,FC=2.37,p=5.43e-65 CD79B,FC=1.37,p=2.86e-14 SCN4A,FC=4.23,p=2.35e-106 ICAM2,FC=-1.43,p=3.66e-37 ICAM2,FC=-2.69,p=1.88e-93 ERN1,FC=-1.21,p=1.08e-21 TEX2,FC=-3.98,p=1.69e-84 PECAM1,FC=-2.76,p=2.57e-50 PECAM1,FC=-7.23,p=6.55e-140 PECAM1,FC=-3.14,p=3.04e-71 C17orf60,FC=0.96,p=8.69e-09


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DHX40,FC=0.25,p=0.030051968 DHX40,FC=0.25,p=0.00016379 CLTC,FC=0.39,p=0.108495852 CLTC,FC=0.23,p=0.094804517 CLTC,FC=0.23,p=9.49e-07 PTRH2,FC=0.65,p=1.37e-13 IL6ST,FC=-0.81,p=2.58e-11 TUBD1,FC=-0.03,p=0.785517382 TUBD1,FC=-0.07,p=0.59360489 TUBD1,FC=-0.20,p=0.05333842 RPS6KB1,FC=0.01,p=0.92545732 RPS6KB1,FC=-0.08,p=0.20520924 RPS6KB1,FC=0.25,p=0.019072658 RNFT1,FC=-0.28,p=0.024718542 RNFT1,FC=-0.10,p=0.614068321 RNFT1,FC=0.12,p=0.5114482 HEATR6,FC=-0.10,p=0.472296421 HEATR6,FC=0.07,p=0.418580243 CA4,FC=-3.82,p=5.42e-52 CA4,FC=-3.93,p=2.29e-58 USP32,FC=0.33,p=1.69e-05 USP32,FC=-0.72,p=4.05e-10 ARL2BP,FC=-0.34,p=0.037523616 C17orf64,FC=0.14,p=0.473105827 APPBP2,FC=-0.52,p=0.009710699 APPBP2,FC=0.61,p=1.5e-13 APPBP2,FC=-0.49,p=7.73e-12 APPBP2,FC=-0.00,p=0.956570173 PPM1D,FC=-0.87,p=2.96e-12 BCAS3,FC=-0.42,p=6.6e-05 AVIL,FC=0.44,p=0.039958789 TBX2,FC=-1.63,p=1.33e-32 TBX2,FC=-2.58,p=5.32e-30 TBX2,FC=-1.11,p=1.4e-18 C17orf82,FC=0.12,p=0.222323583 TBX4,FC=-2.17,p=1.23e-27 NACA2,FC=0.11,p=0.538866029 BRIP1,FC=1.54,p=1.3e-10 INTS2,FC=-0.05,p=0.671749028 MED13,FC=0.52,p=8.57e-07 MED13,FC=-0.11,p=0.420251882 MED13,FC=0.10,p=0.163420684 MED13,FC=-0.04,p=0.526792963 MED13,FC=0.07,p=0.721377907 EFCAB3,FC=0.62,p=0.006803439 METTL2A,FC=0.67,p=4.78e-11 TLK2,FC=0.30,p=8.04e-06 TLK2,FC=0.12,p=0.006479022 TLK2,FC=0.13,p=0.526776347 MRC2,FC=-0.49,p=6.32e-06 MRC2,FC=-0.09,p=0.520294782 MARCH10,FC=0.03,p=0.891303859 MARCH10,FC=-0.18,p=0.233801737 TANC2,FC=-0.08,p=0.456927318 TANC2,FC=0.32,p=0.201085764 TANC2,FC=0.15,p=0.552203676 CYB561,FC=0.68,p=6.67e-13 CYB561,FC=0.59,p=8.62e-07 CYB561,FC=0.48,p=1.08e-08 CYB561,FC=0.61,p=7.7e-11 CYB561,FC=0.75,p=8.67e-12 ACE,FC=-1.71,p=1.57e-27 ACE,FC=-0.39,p=0.036785462 KCNH6,FC=0.31,p=0.12457865 KCNH6,FC=-0.17,p=0.230598265 KCNH6,FC=-0.02,p=0.907991588 DCAF7,FC=-0.32,p=0.008618754 DCAF7,FC=-0.21,p=0.004836127 DCAF7,FC=0.69,p=3.12e-13 DCAF7,FC=0.38,p=0.012879974 DCAF7,FC=0.20,p=0.060370814 DCAF7,FC=0.33,p=2.41e-07 DCAF7,FC=0.00,p=0.95925413 TACO1,FC=0.64,p=1.04e-18 MAP3K3,FC=0.29,p=0.17756965 MAP3K3,FC=0.24,p=0.059091885 MAP3K3,FC=-1.16,p=1.68e-27 LIMD2,FC=0.12,p=0.489140013 STRADA,FC=0.06,p=0.707077761 STRADA,FC=0.27,p=3.62e-05 STRADA,FC=0.36,p=1.76e-05 CCDC47,FC=0.57,p=7.31e-13 CCDC47,FC=-0.05,p=0.589421239 DDX42,FC=0.52,p=0.000345974 DDX42,FC=0.08,p=0.207393071 DDX42,FC=0.30,p=0.13526164 FTSJ3,FC=0.48,p=2.49e-11 PSMC5,FC=0.22,p=3.96e-05 SMARCD2,FC=0.30,p=1.95e-05 TCAM1,FC=0.95,p=0.000366168 CSH2,FC=-0.15,p=0.265027051 CSH2,FC=-0.05,p=0.767826077 CSH2,FC=0.16,p=0.429082782 GH2,FC=0.24,p=0.184032008 GH2,FC=0.12,p=0.596250013 CSH1,FC=0.08,p=0.564296906 CSH1,FC=0.17,p=0.220782843 CSH1,FC=0.19,p=0.301279702 CSH1,FC=0.21,p=0.206295345 CSH1,FC=-0.02,p=0.879117058 CSH1,FC=0.16,p=0.328246926 CSHL1,FC=0.78,p=8.38e-06 CSHL1,FC=0.42,p=0.040727697 CSHL1,FC=0.28,p=0.05543765 CSHL1,FC=0.56,p=0.004098542 CSHL1,FC=0.46,p=0.030691123 GH1,FC=-0.12,p=0.526640768 GH1,FC=0.14,p=0.378078065 GH1,FC=-0.34,p=0.06162391 GH1,FC=0.25,p=0.141788738 CD79B,FC=0.41,p=0.026676872 CD79B,FC=0.19,p=0.310388005 CD79B,FC=0.33,p=0.024601981 SCN4A,FC=0.35,p=0.044015126 C17orf72,FC=0.00,p=0.997287775 ICAM2,FC=-1.04,p=4.15e-18 ICAM2,FC=-1.55,p=1.7e-27 ERN1,FC=0.02,p=0.890410075 ERN1,FC=0.51,p=0.000107236 ERN1,FC=-0.32,p=0.0292959 TEX2,FC=-0.37,p=1.24e-09 PECAM1,FC=-2.00,p=4.08e-22 PECAM1,FC=-1.88,p=4.58e-43 PECAM1,FC=-1.87,p=1.85e-49 C17orf60,FC=-0.23,p=0.129379748

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DHX40,FC=-0.09,p=0.484580957 DHX40,FC=0.12,p=0.112856857 CLTC,FC=0.03,p=0.896484307 CLTC,FC=0.05,p=0.745909805 CLTC,FC=-0.01,p=0.870985095 PTRH2,FC=0.58,p=3.84e-09 IL6ST,FC=-2.00,p=1.48e-30 TUBD1,FC=0.03,p=0.785407073 TUBD1,FC=0.10,p=0.45084196 TUBD1,FC=-0.09,p=0.454224392 RPS6KB1,FC=-0.10,p=0.493108454 RPS6KB1,FC=-0.41,p=9.49e-08 RPS6KB1,FC=0.31,p=0.002021734 RNFT1,FC=-1.18,p=3.08e-12 RNFT1,FC=-0.55,p=0.011857146 RNFT1,FC=-0.42,p=0.012332335 HEATR6,FC=-0.54,p=0.002556329 HEATR6,FC=-0.17,p=0.133033086 CA4,FC=-3.67,p=1.18e-39 CA4,FC=-3.86,p=4.53e-36 USP32,FC=0.33,p=5.52e-05 USP32,FC=-1.03,p=2.63e-15 ARL2BP,FC=0.09,p=0.49765396 C17orf64,FC=0.56,p=0.012984942 APPBP2,FC=-0.89,p=6.01e-05 APPBP2,FC=0.41,p=1.21e-05 APPBP2,FC=-0.83,p=2.59e-20 APPBP2,FC=-0.37,p=6.33e-06 PPM1D,FC=-1.40,p=2.1e-21 BCAS3,FC=0.17,p=0.089541687 AVIL,FC=-0.08,p=0.739606821 TBX2,FC=-1.55,p=1.24e-19 TBX2,FC=-2.32,p=2.63e-19 TBX2,FC=-0.85,p=1.44e-08 C17orf82,FC=0.71,p=1.34e-08 TBX4,FC=-2.20,p=3.39e-21 NACA2,FC=0.17,p=0.352005984 BRIP1,FC=2.21,p=2.79e-14 INTS2,FC=-0.34,p=0.013721206 MED13,FC=0.70,p=9.56e-12 MED13,FC=-0.53,p=0.000139108 MED13,FC=-0.34,p=3.49e-08 MED13,FC=-0.10,p=0.167520944 MED13,FC=-0.38,p=0.055960924 EFCAB3,FC=1.43,p=1.12e-08 METTL2A,FC=0.50,p=1.27e-07 TLK2,FC=0.45,p=9e-12 TLK2,FC=0.31,p=2.89e-07 TLK2,FC=-0.13,p=0.571630821 MRC2,FC=-0.32,p=0.002391038 MRC2,FC=0.41,p=0.00424632 MARCH10,FC=-0.55,p=0.008689231 MARCH10,FC=-0.26,p=0.105463306 TANC2,FC=-0.43,p=2.16e-05 TANC2,FC=-0.87,p=0.000507789 TANC2,FC=-1.24,p=1.23e-08 CYB561,FC=0.28,p=0.00418839 CYB561,FC=0.39,p=0.004226173 CYB561,FC=0.05,p=0.588237743 CYB561,FC=0.30,p=0.005537617 CYB561,FC=0.12,p=0.126940219 ACE,FC=-2.25,p=6.79e-25 ACE,FC=-0.37,p=0.079395056 KCNH6,FC=0.48,p=0.034163812 KCNH6,FC=-0.27,p=0.083997838 KCNH6,FC=0.16,p=0.394577954 DCAF7,FC=-0.58,p=7.23e-06 DCAF7,FC=-0.26,p=0.002158568 DCAF7,FC=0.84,p=3.48e-14 DCAF7,FC=0.53,p=0.001553838 DCAF7,FC=0.22,p=0.016161189 DCAF7,FC=0.44,p=4.57e-07 DCAF7,FC=0.36,p=2.37e-05 TACO1,FC=0.79,p=1.01e-22 MAP3K3,FC=-0.06,p=0.818206096 MAP3K3,FC=0.44,p=0.00121963 MAP3K3,FC=-1.59,p=1.82e-20 LIMD2,FC=0.54,p=0.005228047 STRADA,FC=0.47,p=0.006163859 STRADA,FC=0.39,p=3.32e-08 STRADA,FC=0.71,p=7.88e-13 CCDC47,FC=0.10,p=0.215641997 CCDC47,FC=-0.34,p=0.000653341 DDX42,FC=0.44,p=0.000572197 DDX42,FC=0.05,p=0.473514509 DDX42,FC=-0.09,p=0.697583393 FTSJ3,FC=0.69,p=2.33e-17 PSMC5,FC=0.30,p=1.14e-06 SMARCD2,FC=0.74,p=4.89e-17 TCAM1,FC=1.37,p=8.64e-07 CSH2,FC=-0.13,p=0.30491479 CSH2,FC=-0.39,p=0.019903278 CSH2,FC=0.34,p=0.12254605 GH2,FC=-0.02,p=0.921059843 GH2,FC=0.15,p=0.565679321 CSH1,FC=0.32,p=0.017178467 CSH1,FC=0.23,p=0.073958436 CSH1,FC=-0.15,p=0.473407938 CSH1,FC=-0.07,p=0.679758061 CSH1,FC=-0.00,p=0.987734407 CSH1,FC=0.04,p=0.765916703 CSHL1,FC=0.59,p=0.000441324 CSHL1,FC=-0.25,p=0.251636072 CSHL1,FC=-0.09,p=0.526157028 CSHL1,FC=0.56,p=0.017219323 CSHL1,FC=0.44,p=0.076695449 GH1,FC=-0.18,p=0.392997676 GH1,FC=-0.06,p=0.72643538 GH1,FC=-0.55,p=0.004303761 GH1,FC=0.36,p=0.047439933 CD79B,FC=0.20,p=0.392864641 CD79B,FC=0.38,p=0.102613349 CD79B,FC=0.64,p=5.38e-06 SCN4A,FC=0.55,p=0.004840307 C17orf72,FC=-0.14,p=0.324607284 ICAM2,FC=-1.47,p=1.22e-19 ICAM2,FC=-2.52,p=3.28e-31 ERN1,FC=-0.44,p=0.000654404 ERN1,FC=1.02,p=8.41e-09 ERN1,FC=-1.18,p=4.46e-11 TEX2,FC=-0.04,p=0.55205693 PECAM1,FC=-2.93,p=5.57e-22 PECAM1,FC=-2.33,p=1.62e-35 PECAM1,FC=-2.28,p=7.9e-37 C17orf60,FC=-1.30,p=2.83e-09


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CLTC,FC=0.16,p=0.517818869 RPS6KB1,FC=1.15,p=0.000191999 APPBP2,FC=0.14,p=0.570496713 APPBP2,FC=0.91,p=0.000690512 PPM1D,FC=-0.29,p=0.458439723 TBX2,FC=-0.03,p=0.877911749 TLK2,FC=-0.02,p=0.953566171 TLK2,FC=-0.07,p=0.87971884 CYB561,FC=0.58,p=0.030499096 CYB561,FC=0.27,p=0.424184658 CYB561,FC=0.41,p=0.181866706 MAP3K3,FC=-0.30,p=0.502912959 SMARCD2,FC=0.00,p=0.988910571 CSH2,FC=0.25,p=0.341261713 CSH1,FC=-0.09,p=0.757827691 CSH1,FC=-0.06,p=0.876551669 CD79B,FC=0.87,p=0.066057382 ICAM2,FC=-0.91,p=0.015073452 PECAM1,FC=-1.78,p=1.41e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CLTC,FC=0.01,p=0.968895944 RPS6KB1,FC=0.77,p=0.019869018 APPBP2,FC=0.54,p=0.063600711 APPBP2,FC=0.64,p=0.03303876 PPM1D,FC=-0.17,p=0.564727506 TBX2,FC=-0.18,p=0.498650341 TLK2,FC=0.34,p=0.366032427 TLK2,FC=-0.02,p=0.942757898 CYB561,FC=-0.07,p=0.82672845 CYB561,FC=-0.04,p=0.904434185 CYB561,FC=-0.02,p=0.946173226 MAP3K3,FC=-0.92,p=0.002242375 SMARCD2,FC=-0.34,p=0.216880489 CSH2,FC=-0.05,p=0.875050561 CSH1,FC=-0.51,p=0.040828953 CSH1,FC=-0.54,p=0.036780186 CD79B,FC=0.25,p=0.591810052 ICAM2,FC=-1.82,p=4.19e-05 PECAM1,FC=-2.26,p=7.39e-07


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DHX40,FC=0.05,p=0.004974787 CLTC,FC=0.15,p=0.006188268 CLTC,FC=0.03,p=0.285504304 CLTC,FC=-0.04,p=0.172252615 TUBD1,FC=0.05,p=0.046886216 RPS6KB1,FC=0.04,p=0.574726522 RPS6KB1,FC=-0.10,p=0.062173326 CA4,FC=-0.76,p=5.62e-30 USP32,FC=0.10,p=0.13820068 ARL2BP,FC=-0.06,p=0.416225726 APPBP2,FC=-0.04,p=0.214665274 PPM1D,FC=-0.30,p=0.000409572 BCAS3,FC=-0.06,p=0.000104281 BCAS3,FC=-0.12,p=0.103032222 AVIL,FC=0.08,p=0.24160872 TBX2,FC=-0.64,p=7.52e-11 TBX4,FC=-0.31,p=6.3e-10 BRIP1,FC=0.13,p=0.003417069 BRIP1,FC=0.30,p=0.005552674 TLK2,FC=0.14,p=0.010210498 MRC2,FC=-0.12,p=0.094765607 MRC2,FC=0.00,p=0.926601532 CYB561,FC=0.01,p=0.864577397 ACE,FC=-0.09,p=0.068699398 KCNH6,FC=-0.06,p=0.179898097 KCNH6,FC=0.08,p=0.214877772 KCNH6,FC=0.04,p=0.645254923 MAP3K3,FC=-0.15,p=0.000208447 DDX42,FC=0.15,p=0.006539943 DDX42,FC=0.04,p=0.231737447 FTSJ3,FC=0.04,p=0.342820321 PSMC5,FC=-0.03,p=0.530107187 SMARCD2,FC=-0.03,p=0.437200459 TCAM1,FC=-0.01,p=0.403547948 GH2,FC=0.06,p=0.523286125 CSH1,FC=0.06,p=0.048492229 CSHL1,FC=0.01,p=0.752016979 GH1,FC=0.17,p=0.014787069 CD79B,FC=0.04,p=0.066759355 SCN4A,FC=-0.02,p=0.368699949 ICAM2,FC=-0.62,p=3.73e-10 ERN1,FC=-0.04,p=0.754112036 ERN1,FC=-0.09,p=0.047540677 ERN1,FC=0.08,p=0.005947536

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DHX40,FC=0.03,p=0.296751007 CLTC,FC=0.09,p=0.17640116 CLTC,FC=0.05,p=0.101634118 CLTC,FC=-0.04,p=0.153664912 TUBD1,FC=0.09,p=0.001012342 RPS6KB1,FC=0.08,p=0.094443583 RPS6KB1,FC=-0.13,p=0.000958295 CA4,FC=-0.79,p=1.38e-19 USP32,FC=0.14,p=0.024818639 ARL2BP,FC=-0.07,p=0.369087029 APPBP2,FC=-0.10,p=0.002124284 PPM1D,FC=-0.34,p=0.00082676 BCAS3,FC=-0.01,p=0.565148553 BCAS3,FC=-0.16,p=0.053627268 AVIL,FC=0.01,p=0.904751797 TBX2,FC=-0.79,p=2.5e-12 TBX4,FC=-0.35,p=2.32e-09 BRIP1,FC=0.17,p=0.000116648 BRIP1,FC=0.37,p=0.000982963 TLK2,FC=0.17,p=0.001427705 MRC2,FC=-0.18,p=0.005900441 MRC2,FC=-0.01,p=0.781776653 CYB561,FC=-0.12,p=0.038409547 ACE,FC=-0.09,p=0.052801605 KCNH6,FC=-0.08,p=0.065821295 KCNH6,FC=0.09,p=0.162629584 KCNH6,FC=-0.08,p=0.37403851 MAP3K3,FC=-0.17,p=2.81e-07 DDX42,FC=0.06,p=0.229540619 DDX42,FC=0.03,p=0.460830948 FTSJ3,FC=0.07,p=0.112303583 PSMC5,FC=0.02,p=0.735075179 SMARCD2,FC=-0.01,p=0.853013338 TCAM1,FC=-0.01,p=0.652542795 GH2,FC=0.10,p=0.216475088 CSH1,FC=0.10,p=0.173180427 CSHL1,FC=0.02,p=0.63143779 GH1,FC=0.18,p=0.008859966 CD79B,FC=0.04,p=0.202130863 SCN4A,FC=-0.04,p=0.131211058 ICAM2,FC=-0.81,p=1.54e-12 ERN1,FC=-0.10,p=0.348200033 ERN1,FC=-0.12,p=0.003114787 ERN1,FC=0.08,p=0.013689829


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-21,Mean=-2.80

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-21,Mean=-3.37

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-21,Mean=1.57

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-21,Mean=1.34

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

DHX40,FC=0.41,p=1.13e-08 CLTC,FC=0.32,p=2.5e-13 CLTC,FC=0.03,p=0.880039619 PTRH2,FC=0.59,p=5.35e-20 IL6ST,FC=-0.20,p=0.029301758 TUBD1,FC=0.10,p=0.209353062 TUBD1,FC=-0.17,p=0.006906222 RPS6KB1,FC=0.46,p=3.14e-10 RPS6KB1,FC=1.32,p=1.1e-26 RNFT1,FC=0.45,p=8.97e-07 RNFT1,FC=1.23,p=6.69e-09 HEATR6,FC=0.34,p=0.007815352 HEATR6,FC=0.31,p=1.33e-07 CA4,FC=-3.53,p=1.29e-54 CA4,FC=-3.34,p=3.13e-90 USP32,FC=0.31,p=1.81e-08 ARL2BP,FC=-0.08,p=0.24096648 APPBP2,FC=0.11,p=0.043795392 APPBP2,FC=0.70,p=4.12e-16 APPBP2,FC=-0.04,p=0.812001008 APPBP2,FC=-0.35,p=3.56e-07 PPM1D,FC=-0.77,p=1.81e-30 BCAS3,FC=-0.58,p=8.16e-26 TBX2,FC=-2.11,p=1.99e-36 TBX2,FC=-0.98,p=1.41e-14 TBX2,FC=-2.05,p=4.6e-54 TBX4,FC=-1.78,p=1.27e-24 NACA2,FC=0.17,p=0.341625779 BRIP1,FC=0.58,p=0.000439504 MED13,FC=-0.20,p=0.00192718 MED13,FC=0.12,p=0.020172827 TLK2,FC=-0.10,p=0.022260672 TLK2,FC=0.35,p=6.64e-10 MRC2,FC=0.42,p=2.85e-06 MRC2,FC=-0.53,p=7.65e-11 TANC2,FC=1.96,p=7.31e-22 CYB561,FC=0.68,p=7.26e-20 CYB561,FC=0.32,p=1.55e-05 CYB561,FC=0.35,p=7.68e-07 CYB561,FC=0.19,p=0.0073479 CYB561,FC=0.46,p=7.56e-13 ACE,FC=-1.07,p=1.9e-17 KCNH6,FC=0.33,p=0.050774921 KCNH6,FC=0.20,p=0.24247414 KCNH6,FC=-0.26,p=0.080507555 DCAF7,FC=0.56,p=2.56e-11 DCAF7,FC=-0.01,p=0.912816896 DCAF7,FC=0.38,p=9.22e-09 TACO1,FC=0.29,p=5.51e-07 MAP3K3,FC=0.03,p=0.669182888 LIMD2,FC=1.20,p=5.68e-13 STRADA,FC=-0.09,p=0.065467475 STRADA,FC=-0.42,p=1.19e-11 CCDC47,FC=0.75,p=3.28e-18 DDX42,FC=0.01,p=0.832797322 FTSJ3,FC=-0.17,p=0.001285306 PSMC5,FC=0.18,p=6.69e-05 SMARCD2,FC=0.55,p=1.96e-16 CSH2,FC=-0.72,p=4.23e-15 CSH2,FC=-1.51,p=3.48e-23 CSH2,FC=-0.51,p=2.77e-14 GH2,FC=-0.44,p=3.68e-07 GH2,FC=-0.39,p=0.022045375 CSH1,FC=-0.16,p=0.011732052 CSH1,FC=-0.23,p=1.4e-05 CSH1,FC=-0.31,p=3.77e-07 CSH1,FC=-0.31,p=1.65e-06 CSH1,FC=-0.03,p=0.622151608 CSH1,FC=-0.31,p=0.001807482 CSHL1,FC=-0.08,p=0.50406235 CSHL1,FC=0.32,p=0.040219134 CSHL1,FC=-0.10,p=0.277452027 CSHL1,FC=-0.00,p=0.998120902 CSHL1,FC=-0.39,p=7.55e-06 GH1,FC=-0.71,p=6.39e-10 GH1,FC=-0.71,p=4.14e-07 GH1,FC=-0.42,p=0.001684739 GH1,FC=-0.56,p=4.02e-10 CD79B,FC=1.56,p=2.33e-20 SCN4A,FC=-0.18,p=0.13295561 ICAM2,FC=-1.50,p=5.89e-41 ICAM2,FC=-1.62,p=2.15e-41 ERN1,FC=-0.24,p=2.26e-05 TEX2,FC=-0.66,p=2.65e-23 PECAM1,FC=-1.60,p=2.53e-22 PECAM1,FC=-2.28,p=2.63e-70 PECAM1,FC=-1.71,p=9.49e-57 C17orf60,FC=1.20,p=2.13e-11

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-178C3, 10/50, 0.2 RP11-178C3, 1/50, 0.02 RP11-332H18, 11/50, 0.22 RP11-332H18, 2/50, 0.04 RP11-342K2, 17/50, 0.34 RP11-342K2, 2/50, 0.04 RP11-156L14, 10/50, 0.2 RP11-156L14, 2/50, 0.04 RP11-89H15, 17/50, 0.34 RP11-89H15, 1/50, 0.02

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12599234

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

PMID=10987304 D17S944, 1/18, 6%

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