IGDB.NSCLC Chromosome View

Chromosome 17
17p13 17p12 17p11 17q11 17q12 17q21 17q22 17q23 17q24 17q25         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , PRKAR1A, 0.53%, 1/189 MAP2K6, 0.50%, 1/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.50,p=0.00018589 DDX5,FC=-0.13,p=0.066838295 SMURF2,FC=-0.06,p=0.618656736 GNA13,FC=-0.58,p=0.016363053 GNA13,FC=-0.11,p=0.4475602 RGS9,FC=-0.34,p=0.069354633 CCDC46,FC=-0.73,p=0.010834217 APOH,FC=-0.39,p=0.190828271 PRKCA,FC=0.91,p=3.49e-06 PRKCA,FC=-0.08,p=0.460418954 PRKCA,FC=0.08,p=0.632613654 PRKCA,FC=0.57,p=0.011658111 CACNG1,FC=0.17,p=0.108536207 HELZ,FC=0.04,p=0.597989213 PSMD12,FC=-0.24,p=0.01371337 BPTF,FC=0.66,p=1.21e-08 SLC16A6,FC=-0.28,p=0.027254265 WIPI1,FC=0.04,p=0.775434447 PRKAR1A,FC=-0.25,p=0.023487834 PRKAR1A,FC=-0.23,p=0.015441817 PRKAR1A,FC=-0.26,p=0.001728254 ABCA8,FC=-2.94,p=6.2e-20 ABCA6,FC=-1.41,p=4.69e-09 ABCA6,FC=-2.30,p=4.12e-18 ABCA5,FC=0.06,p=0.813185358 MAP2K6,FC=0.54,p=0.003687655 MAP2K6,FC=-0.03,p=0.87699756 KCNJ2,FC=0.07,p=0.741856342 SOX9,FC=0.61,p=0.00016056

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.34,p=0.136455399 DDX5,FC=-0.41,p=6.85e-05 SMURF2,FC=-0.44,p=4.09e-05 GNA13,FC=-0.39,p=0.297188138 GNA13,FC=-0.13,p=0.569741832 RGS9,FC=-0.30,p=0.180026775 CCDC46,FC=-1.30,p=0.000848757 APOH,FC=-1.13,p=0.001222538 PRKCA,FC=0.63,p=0.030800649 PRKCA,FC=-0.41,p=0.000764582 PRKCA,FC=-0.45,p=0.064612164 PRKCA,FC=0.50,p=0.105226555 CACNG1,FC=0.15,p=0.294281935 HELZ,FC=0.06,p=0.530707282 PSMD12,FC=-0.33,p=0.0080806 BPTF,FC=0.72,p=3.38e-06 SLC16A6,FC=-0.28,p=0.185482644 WIPI1,FC=0.36,p=0.064383962 PRKAR1A,FC=-0.69,p=0.000186602 PRKAR1A,FC=-0.78,p=8.98e-07 PRKAR1A,FC=-0.59,p=3.06e-08 ABCA8,FC=-3.88,p=2.78e-17 ABCA6,FC=-1.74,p=2.77e-07 ABCA6,FC=-2.24,p=3.09e-09 ABCA5,FC=0.37,p=0.304575566 MAP2K6,FC=0.35,p=0.126681987 MAP2K6,FC=-0.20,p=0.433187894 KCNJ2,FC=0.21,p=0.437339134 SOX9,FC=1.06,p=4.5e-08


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.73,p=4.84e-24 DDX5,FC=-0.28,p=7.92e-08 SMURF2,FC=-0.03,p=0.712443764 GNA13,FC=0.10,p=0.394743622 RGS9,FC=-1.27,p=7.75e-24 CCDC46,FC=-0.50,p=8.7e-09 APOH,FC=-0.53,p=0.008228615 PRKCA,FC=1.39,p=2.35e-15 PRKCA,FC=-0.27,p=0.00686936 PRKCA,FC=0.44,p=0.000702612 CACNG5,FC=-0.76,p=6.26e-10 CACNG4,FC=-1.19,p=1.12e-15 CACNG4,FC=-0.62,p=2.94e-12 CACNG1,FC=0.16,p=0.199209385 HELZ,FC=-0.16,p=0.000175908 PSMD12,FC=0.67,p=3.19e-37 PITPNC1,FC=0.19,p=0.022781818 NOL11,FC=0.41,p=1.13e-14 BPTF,FC=0.46,p=3.6e-08 BPTF,FC=-0.30,p=3e-08 AMZ2,FC=0.32,p=1.82e-16 SLC16A6,FC=-0.23,p=0.065238027 WIPI1,FC=0.40,p=4.42e-08 WIPI1,FC=0.09,p=0.206082982 PRKAR1A,FC=0.78,p=2.59e-17 PRKAR1A,FC=-0.09,p=0.104789339 PRKAR1A,FC=0.02,p=0.801678573 ABCA8,FC=-3.44,p=7.37e-82 ABCA6,FC=-1.47,p=4.86e-33 ABCA5,FC=-0.24,p=0.008403534 MAP2K6,FC=0.12,p=0.106388863 MAP2K6,FC=-0.16,p=0.097744958 KCNJ16,FC=-0.46,p=0.002755377 KCNJ2,FC=-0.39,p=6.29e-06 SOX9,FC=0.53,p=0.000495027 SOX9,FC=0.36,p=0.019325947

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.50,p=2.18e-10 DDX5,FC=-9.22,p=2.36e-134 SMURF2,FC=-5.06,p=1.18e-130 GNA13,FC=1.94,p=1.48e-33 RGS9,FC=1.94,p=1.71e-40 CCDC46,FC=5.38,p=9.29e-184 APOH,FC=0.70,p=1.66e-10 PRKCA,FC=0.19,p=0.364656073 PRKCA,FC=-1.09,p=5.38e-38 PRKCA,FC=5.16,p=2.57e-125 CACNG5,FC=-0.41,p=0.006590377 CACNG4,FC=1.32,p=4.19e-26 CACNG4,FC=-7.48,p=4.32e-166 CACNG1,FC=-0.37,p=0.019333127 HELZ,FC=1.41,p=2.95e-70 PSMD12,FC=0.33,p=3.7e-05 PITPNC1,FC=0.07,p=0.327678417 NOL11,FC=-0.18,p=0.004197169 BPTF,FC=-3.48,p=4.01e-27 BPTF,FC=-0.58,p=4.74e-21 AMZ2,FC=-3.02,p=1.45e-113 SLC16A6,FC=-0.03,p=0.809677797 WIPI1,FC=2.17,p=5.66e-52 WIPI1,FC=0.04,p=0.524686171 PRKAR1A,FC=3.71,p=2.26e-121 PRKAR1A,FC=2.51,p=2.69e-132 PRKAR1A,FC=1.90,p=2.62e-58 ABCA8,FC=-2.30,p=6.03e-62 ABCA6,FC=0.25,p=0.021141723 ABCA5,FC=1.40,p=1.22e-70 MAP2K6,FC=-0.47,p=3.87e-07 MAP2K6,FC=3.41,p=2.45e-83 KCNJ16,FC=3.04,p=8.56e-67 KCNJ2,FC=-0.89,p=4.85e-27 SOX9,FC=0.76,p=3.12e-21 SOX9,FC=1.69,p=4.04e-52


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.73,p=1.99e-21 DDX5,FC=-0.22,p=7.22e-06 DDX5,FC=-0.62,p=3.18e-13 CCDC45,FC=-0.48,p=0.035416717 CCDC45,FC=-0.51,p=0.007654299 CCDC45,FC=-0.03,p=0.68475024 SMURF2,FC=0.06,p=0.561415037 SMURF2,FC=0.20,p=0.075055773 SMURF2,FC=-0.94,p=4.54e-10 LRRC37A3,FC=-0.00,p=0.957974978 FLJ32065,FC=-0.19,p=0.095803731 GNA13,FC=0.76,p=0.000394472 GNA13,FC=-0.47,p=3.72e-12 GNA13,FC=0.22,p=0.215212895 RGS9,FC=-1.71,p=6.77e-17 AXIN2,FC=0.41,p=0.019284249 AXIN2,FC=0.42,p=0.021981894 AXIN2,FC=0.50,p=0.00459976 AXIN2,FC=-0.70,p=1.13e-06 CCDC46,FC=0.51,p=0.011476153 CCDC46,FC=-0.33,p=0.089135438 CCDC46,FC=0.41,p=0.021238786 CCDC46,FC=-0.82,p=9.65e-12 APOH,FC=-1.78,p=2.39e-13 PRKCA,FC=0.24,p=0.109977029 PRKCA,FC=0.56,p=0.00147757 PRKCA,FC=0.96,p=1.61e-06 PRKCA,FC=-0.26,p=0.035501683 CACNG5,FC=0.02,p=0.88377075 CACNG5,FC=0.35,p=0.010554568 CACNG4,FC=-0.34,p=0.063126466 CACNG4,FC=0.98,p=7.01e-11 CACNG4,FC=-0.07,p=0.730301454 CACNG1,FC=0.12,p=0.487070919 HELZ,FC=0.19,p=0.183783245 HELZ,FC=0.16,p=0.016652867 HELZ,FC=-0.12,p=0.071007314 TMEM17,FC=-0.04,p=0.820032857 PSMD12,FC=0.43,p=4.51e-09 PITPNC1,FC=0.37,p=0.004128765 PITPNC1,FC=-0.68,p=1.12e-05 PITPNC1,FC=-0.39,p=0.000199597 NOL11,FC=0.38,p=2.42e-09 BPTF,FC=-0.13,p=0.015727738 BPTF,FC=0.21,p=0.010075283 BPTF,FC=-0.01,p=0.910745925 BPTF,FC=0.37,p=0.093227949 BPTF,FC=-0.25,p=0.0313025 BPTF,FC=0.62,p=7.22e-14 C17orf58,FC=0.65,p=8.78e-13 LOC651250,FC=0.20,p=0.277063419 LOC651250,FC=0.08,p=0.396043124 LOC651250,FC=0.10,p=0.4895767 LOC651250,FC=0.09,p=0.365141627 AMZ2,FC=0.44,p=1.49e-12 ARSG,FC=-0.08,p=0.532637053 SLC16A6,FC=-1.35,p=2.06e-23 SLC16A6,FC=-0.55,p=3.52e-07 WIPI1,FC=0.09,p=0.403105931 WIPI1,FC=-0.08,p=0.446533441 PRKAR1A,FC=-0.14,p=0.014753918 PRKAR1A,FC=-0.21,p=0.035408462 PRKAR1A,FC=0.52,p=9.18e-05 PRKAR1A,FC=-0.39,p=0.000543611 FAM20A,FC=-0.70,p=0.000783957 FAM20A,FC=0.05,p=0.742603281 FAM20A,FC=-1.59,p=9.83e-26 ABCA8,FC=-0.75,p=0.000187276 ABCA8,FC=-3.48,p=7.43e-48 ABCA9,FC=-1.51,p=8.98e-17 ABCA9,FC=-1.11,p=1.7e-08 ABCA9,FC=-1.26,p=1.24e-10 ABCA6,FC=-1.64,p=5.13e-22 ABCA5,FC=-0.43,p=5.53e-05 MAP2K6,FC=0.26,p=0.163308569 MAP2K6,FC=0.61,p=1.56e-05 JAK1,FC=0.60,p=7.64e-05 KCNJ16,FC=-0.78,p=0.004001024 KCNJ16,FC=-0.19,p=0.34848841 KCNJ2,FC=-0.18,p=0.125035196 SOX9,FC=0.42,p=0.048348214 SOX9,FC=0.42,p=0.068643024 C15orf50,FC=0.14,p=0.460449263 SLC39A11,FC=0.87,p=1.14e-18

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.32,p=0.004500549 DDX5,FC=-0.33,p=3.94e-09 DDX5,FC=-0.83,p=5.98e-15 CCDC45,FC=-1.36,p=4.51e-07 CCDC45,FC=-0.23,p=0.328342564 CCDC45,FC=0.01,p=0.919456236 SMURF2,FC=-0.55,p=6.05e-10 SMURF2,FC=0.16,p=0.107996846 SMURF2,FC=-1.68,p=2.42e-19 LRRC37A3,FC=0.14,p=0.169011887 FLJ32065,FC=-0.06,p=0.574415143 GNA13,FC=0.17,p=0.492499081 GNA13,FC=-0.32,p=7.07e-05 GNA13,FC=0.78,p=2.86e-05 RGS9,FC=-0.99,p=7.33e-07 AXIN2,FC=0.33,p=0.088169418 AXIN2,FC=0.41,p=0.059327658 AXIN2,FC=0.67,p=0.001208408 AXIN2,FC=-1.09,p=1.15e-12 CCDC46,FC=0.34,p=0.148247608 CCDC46,FC=-1.14,p=6.97e-06 CCDC46,FC=0.82,p=3.31e-05 CCDC46,FC=-1.48,p=9.49e-25 APOH,FC=-3.28,p=1.06e-37 PRKCA,FC=-0.10,p=0.540121254 PRKCA,FC=-0.56,p=0.004216934 PRKCA,FC=0.72,p=0.000272262 PRKCA,FC=-0.81,p=7.12e-14 CACNG5,FC=0.24,p=0.181466984 CACNG5,FC=0.70,p=4.44e-06 CACNG4,FC=-0.46,p=0.010359893 CACNG4,FC=1.21,p=2.99e-10 CACNG4,FC=-0.31,p=0.155301282 CACNG1,FC=-0.01,p=0.955360627 HELZ,FC=0.11,p=0.506723772 HELZ,FC=0.13,p=0.050391873 HELZ,FC=-0.24,p=0.002091778 TMEM17,FC=0.51,p=0.005304328 PSMD12,FC=0.71,p=1.9e-15 PITPNC1,FC=-0.28,p=0.003928467 PITPNC1,FC=-1.37,p=2.92e-18 PITPNC1,FC=-0.65,p=2.26e-10 NOL11,FC=0.49,p=7.03e-09 BPTF,FC=-0.20,p=0.00208103 BPTF,FC=0.14,p=0.082566546 BPTF,FC=-0.07,p=0.302591915 BPTF,FC=-0.27,p=0.271856574 BPTF,FC=-0.50,p=0.000155153 BPTF,FC=0.66,p=2.55e-13 C17orf58,FC=0.35,p=0.000842567 LOC651250,FC=0.64,p=0.001181937 LOC651250,FC=-0.65,p=1.61e-08 LOC651250,FC=-0.79,p=4.73e-06 LOC651250,FC=-0.52,p=5.71e-08 AMZ2,FC=0.65,p=1.19e-17 ARSG,FC=-0.08,p=0.584840768 SLC16A6,FC=-1.69,p=5.49e-25 SLC16A6,FC=-0.84,p=5.31e-09 WIPI1,FC=0.14,p=0.28109775 WIPI1,FC=-0.03,p=0.782633486 PRKAR1A,FC=-0.60,p=1.98e-12 PRKAR1A,FC=-0.44,p=2.55e-06 PRKAR1A,FC=-0.08,p=0.519340368 PRKAR1A,FC=-1.01,p=7.58e-19 FAM20A,FC=-2.17,p=7.94e-15 FAM20A,FC=-0.84,p=2.94e-06 FAM20A,FC=-2.31,p=3.97e-41 ABCA8,FC=-0.69,p=0.002665488 ABCA8,FC=-4.33,p=7.97e-45 ABCA9,FC=-1.43,p=1.03e-15 ABCA9,FC=-1.45,p=1.15e-10 ABCA9,FC=-1.73,p=1.08e-13 ABCA6,FC=-1.96,p=1.49e-23 ABCA5,FC=0.02,p=0.880418867 MAP2K6,FC=0.05,p=0.815042429 MAP2K6,FC=0.80,p=1.43e-11 JAK1,FC=1.18,p=7.57e-09 KCNJ16,FC=0.00,p=0.99497996 KCNJ16,FC=-0.08,p=0.727595613 KCNJ2,FC=0.59,p=2.09e-05 SOX9,FC=1.07,p=5.24e-10 SOX9,FC=0.96,p=6.22e-06 C15orf50,FC=0.33,p=0.13480654 SLC39A11,FC=0.88,p=5.7e-15


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      DDX5,FC=0.37,p=0.411843198 SMURF2,FC=0.41,p=0.249419474 RGS9,FC=-0.59,p=0.071038893 APOH,FC=0.01,p=0.985030805 APOH,FC=0.65,p=0.238822493 PRKCA,FC=0.48,p=0.268339923 CACNG5,FC=-0.53,p=0.208351127 CACNG1,FC=0.42,p=0.135962212 PSMD12,FC=0.81,p=0.000769389 PRKAR1A,FC=-0.84,p=0.003237872 PRKAR1A,FC=-0.28,p=0.280161334 PRKAR1A,FC=-0.68,p=0.098321702 ABCA6,FC=-1.45,p=3.48e-05 ABCA5,FC=0.02,p=0.946291032 ABCA5,FC=-0.26,p=0.428353752 MAP2K6,FC=0.25,p=0.433097073 KCNJ16,FC=-0.95,p=0.096613348 KCNJ2,FC=-0.99,p=0.000475718 SOX9,FC=0.81,p=0.114811931

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      DDX5,FC=-0.16,p=0.742153374 SMURF2,FC=-0.19,p=0.377065119 RGS9,FC=-0.43,p=0.362889632 APOH,FC=0.51,p=0.269016065 APOH,FC=-0.08,p=0.852360255 PRKCA,FC=0.18,p=0.653493176 CACNG5,FC=-0.18,p=0.686461449 CACNG1,FC=0.75,p=0.050057944 PSMD12,FC=0.94,p=0.001081438 PRKAR1A,FC=-1.07,p=0.000900504 PRKAR1A,FC=-0.81,p=0.001550108 PRKAR1A,FC=-1.13,p=0.000854388 ABCA6,FC=-1.74,p=0.001111781 ABCA5,FC=-0.02,p=0.950743875 ABCA5,FC=-0.20,p=0.512754479 MAP2K6,FC=0.50,p=0.193069845 KCNJ16,FC=-0.35,p=0.493032751 KCNJ2,FC=-0.01,p=0.975161165 SOX9,FC=0.88,p=0.18330017


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.07,p=0.024052613 DDX5,FC=0.08,p=0.201821049 DDX5,FC=0.04,p=0.619468176 SMURF2,FC=0.13,p=0.046415747 SMURF2,FC=-0.03,p=0.647962565 SMURF2,FC=0.08,p=0.119428002 GNA13,FC=-0.02,p=0.684731183 RGS9,FC=-0.17,p=9.5e-09 AXIN2,FC=-0.10,p=0.106429956 AXIN2,FC=0.02,p=0.698730167 AXIN2,FC=0.01,p=0.881631511 APOH,FC=-0.02,p=0.910703236 PRKCA,FC=0.06,p=0.329754922 CACNG5,FC=0.02,p=0.273780077 CACNG4,FC=0.02,p=0.489828865 CACNG1,FC=-0.09,p=0.009507225 PSMD12,FC=0.16,p=0.001524927 PSMD12,FC=-0.07,p=0.384433612 SLC16A6,FC=-0.20,p=0.001076935 SLC16A6,FC=-0.16,p=0.001170073 PRKAR1A,FC=-0.06,p=0.424354349 FAM20A,FC=-0.09,p=0.471861681 FAM20A,FC=0.06,p=0.231292047 ABCA8,FC=-0.25,p=0.000110337 ABCA9,FC=-0.02,p=0.621660371 ABCA6,FC=-0.11,p=0.024498602 ABCA5,FC=0.17,p=0.089154156 MAP2K6,FC=0.06,p=0.234521662 KCNJ16,FC=0.04,p=0.727556281 KCNJ2,FC=-0.01,p=0.604002521 SOX9,FC=0.15,p=0.028295892 SLC39A11,FC=0.10,p=0.01905951

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      POLG2,FC=0.04,p=0.20719644 DDX5,FC=0.05,p=0.482254209 DDX5,FC=-0.03,p=0.651450721 SMURF2,FC=0.02,p=0.665593678 SMURF2,FC=-0.28,p=5.28e-06 SMURF2,FC=0.07,p=0.185051397 GNA13,FC=0.03,p=0.552854372 RGS9,FC=-0.17,p=3.17e-07 AXIN2,FC=-0.19,p=0.000700066 AXIN2,FC=-0.03,p=0.593874892 AXIN2,FC=-0.02,p=0.61158282 APOH,FC=-0.30,p=6.07e-08 PRKCA,FC=0.06,p=0.17391954 CACNG5,FC=0.01,p=0.431070144 CACNG4,FC=0.01,p=0.60279583 CACNG1,FC=-0.08,p=0.068680456 PSMD12,FC=0.31,p=2.8e-08 PSMD12,FC=-0.11,p=0.092233109 SLC16A6,FC=-0.23,p=0.000950285 SLC16A6,FC=-0.16,p=0.000233767 PRKAR1A,FC=-0.23,p=0.00589343 FAM20A,FC=-0.34,p=0.005065713 FAM20A,FC=0.04,p=0.410005958 ABCA8,FC=-0.27,p=0.000267686 ABCA9,FC=-0.02,p=0.47605461 ABCA6,FC=-0.12,p=0.004639502 ABCA5,FC=0.25,p=0.007149122 MAP2K6,FC=0.10,p=0.025043424 KCNJ16,FC=0.12,p=0.456273906 KCNJ2,FC=-0.03,p=0.310617275 SOX9,FC=0.08,p=0.062472688 SLC39A11,FC=0.12,p=0.016786399


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-548d-2,Mean=-0.06 hsa-mir-635,Mean=0.01

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-548d-2,Mean=-0.02 hsa-mir-635,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

POLG2,FC=0.82,p=1.6e-20 DDX5,FC=-0.18,p=0.000121153 SMURF2,FC=0.44,p=2.7e-08 GNA13,FC=0.59,p=1.62e-06 RGS9,FC=-1.14,p=2.08e-17 CCDC46,FC=-0.45,p=5.67e-08 APOH,FC=-0.25,p=0.177732402 PRKCA,FC=1.52,p=6.29e-14 PRKCA,FC=-0.21,p=0.035795682 PRKCA,FC=0.70,p=2.87e-05 CACNG5,FC=-1.15,p=1.07e-14 CACNG4,FC=-1.22,p=5.28e-16 CACNG4,FC=-1.05,p=2.88e-27 CACNG1,FC=0.20,p=0.149042962 HELZ,FC=-0.33,p=2.89e-09 PSMD12,FC=0.67,p=1.49e-28 PITPNC1,FC=0.08,p=0.373506791 NOL11,FC=0.25,p=3.44e-08 BPTF,FC=0.93,p=1.3e-26 BPTF,FC=-0.31,p=4.69e-09 AMZ2,FC=0.45,p=1.5e-20 SLC16A6,FC=0.33,p=0.00547506 WIPI1,FC=0.32,p=4.45e-05 WIPI1,FC=0.06,p=0.448415083 PRKAR1A,FC=0.90,p=6.27e-18 PRKAR1A,FC=-0.13,p=0.015708801 PRKAR1A,FC=0.14,p=0.073987052 ABCA8,FC=-3.00,p=2.29e-48 ABCA6,FC=-1.04,p=5.78e-18 ABCA5,FC=-0.31,p=0.000289056 MAP2K6,FC=-0.05,p=0.552733973 MAP2K6,FC=-0.22,p=0.050354113 KCNJ16,FC=-0.48,p=0.003159124 KCNJ2,FC=-0.42,p=8.74e-06 SOX9,FC=0.41,p=0.0063265 SOX9,FC=0.81,p=1.8e-06

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-115N5, 8/50, 0.16 RP11-115N5, 0/50, 0 RP11-4F22, 11/50, 0.22 RP11-4F22, 2/50, 0.04 RP11-74H8, 11/50, 0.22 RP11-74H8, 2/50, 0.04 RP11-147L13, 15/50, 0.3 RP11-147L13, 0/50, 0 RP11-283E7, 17/50, 0.34 RP11-283E7, 0/50, 0 RP1-138G16, 4/50, 0.08 RP1-138G16, 0/50, 0 RP11-238F2, 6/50, 0.12 RP11-238F2, 2/50, 0.04 RP11-166M16, 7/50, 0.14 RP11-166M16, 1/50, 0.02 RP11-171G2, 9/50, 0.18 RP11-171G2, 1/50, 0.02 RP11-387C17, 5/50, 0.1 RP11-387C17, 0/50, 0

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D17S1816, 13/26, 50% Our unpublished data D17S2193, 21/35, 60% Our unpublished data ATA108A05, 22/39, 56% Our unpublished data D17S949, 7/14, 50% PMID=10987304 D17S949, 3/18, 17% D17S2193, 8/15, 53% PMID=15900585 D17S2193, 9/18, 50%

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