IGDB.NSCLC Chromosome View

Chromosome 19
19p13 19p12 19p11 19q11 19q12 19q13         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF253,FC=0.40,p=0.000940789 ZNF253,FC=0.32,p=0.157446157 ZNF85,FC=0.24,p=0.054797187 ZNF43,FC=0.39,p=0.002215994 ZNF208,FC=0.72,p=0.000892549 ZNF91,FC=-0.07,p=0.424609666 ZNF91,FC=-0.26,p=0.005616765 ZNF254,FC=0.52,p=0.004389239

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF253,FC=0.37,p=0.034875353 ZNF253,FC=0.13,p=0.650294561 ZNF85,FC=-0.36,p=0.076964794 ZNF43,FC=0.12,p=0.602412467 ZNF208,FC=0.71,p=0.009851387 ZNF91,FC=-0.27,p=0.043530045 ZNF91,FC=-0.65,p=0.000975275 ZNF254,FC=-0.32,p=0.292277497


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF253,FC=0.09,p=0.070418398 ZNF93,FC=0.06,p=0.545718508 ZNF93,FC=0.22,p=0.000343285 ZNF682,FC=0.10,p=0.610757684 ZNF85,FC=-0.12,p=0.072903647 ZNF430,FC=-0.21,p=0.002384879 ZNF493,FC=-0.33,p=0.015032099 ZNF43,FC=-0.21,p=0.04595758 ZNF43,FC=0.35,p=1.74e-05 ZNF208,FC=-0.51,p=0.000305243 ZNF257,FC=-0.08,p=0.608633599 ZNF492,FC=-0.04,p=0.643048735 ZNF91,FC=-0.16,p=0.13181297 ZNF675,FC=0.42,p=0.000210881 ZNF254,FC=0.42,p=0.000484769

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF253,FC=1.11,p=6.31e-34 ZNF93,FC=-3.08,p=3.7e-76 ZNF93,FC=-1.30,p=9.87e-44 ZNF682,FC=1.75,p=4.58e-30 ZNF85,FC=0.18,p=0.002665908 ZNF430,FC=-1.27,p=1.13e-32 ZNF493,FC=-0.57,p=0.00133024 ZNF43,FC=-1.68,p=5.18e-37 ZNF43,FC=-2.58,p=3.06e-31 ZNF208,FC=0.51,p=0.006881398 ZNF257,FC=5.19,p=2.53e-111 ZNF492,FC=-0.04,p=0.782279475 ZNF91,FC=-1.19,p=2.41e-26 ZNF675,FC=-0.21,p=0.226461131 ZNF254,FC=-0.87,p=1.26e-11


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF253,FC=0.63,p=6e-12 ZNF253,FC=0.27,p=0.015055064 ZNF93,FC=0.86,p=4.65e-15 ZNF93,FC=0.52,p=2.09e-05 ZNF93,FC=0.12,p=0.575786968 ZNF93,FC=0.28,p=0.184756413 ZNF682,FC=-0.16,p=0.496348972 ZNF682,FC=-0.31,p=0.041791701 ZNF90,FC=0.86,p=2.74e-05 ZNF486,FC=0.25,p=0.044208292 ZNF826,FC=0.41,p=0.024779933 ZNF826,FC=0.26,p=0.210096211 ZNF626,FC=-0.45,p=0.002156654 ZNF626,FC=-0.26,p=0.038759239 ZNF626,FC=0.44,p=0.00047217 ZNF85,FC=1.33,p=2.32e-08 ZNF85,FC=0.22,p=0.013621978 ZNF430,FC=-0.62,p=1.57e-11 ZNF430,FC=-0.12,p=0.280644061 ZNF708,FC=-0.09,p=0.351303953 ZNF738,FC=-0.46,p=0.007128419 ZNF738,FC=0.83,p=4.83e-11 ZNF493,FC=-0.22,p=0.064886467 ZNF493,FC=0.10,p=0.465461459 ZNF493,FC=-0.21,p=0.141938193 ZNF493,FC=-0.54,p=0.000421203 ZNF100,FC=-0.29,p=0.005494474 ZNF43,FC=-0.03,p=0.807686213 ZNF43,FC=0.05,p=0.640726052 ZNF208,FC=0.13,p=0.497346919 ZNF208,FC=0.31,p=0.161070824 ZNF208,FC=0.49,p=0.023857484 ZNF257,FC=0.45,p=0.048783224 ZNF492,FC=0.30,p=0.065248973 ZNF99,FC=-0.16,p=0.516939784 ZNF99,FC=0.21,p=0.386926709 ZNF91,FC=-0.32,p=0.006616108 ZNF91,FC=-0.37,p=0.010588024 C14orf167,FC=0.06,p=0.721517827 ZNF675,FC=0.51,p=0.000319367 ZNF681,FC=0.53,p=4.59e-05 ZNF681,FC=0.21,p=0.307638466 ZNF254,FC=0.06,p=0.610006658 ZNF254,FC=0.45,p=1.83e-08 ZNF254,FC=0.25,p=0.04039215

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF253,FC=0.77,p=1.23e-11 ZNF253,FC=-0.29,p=0.028711792 ZNF93,FC=1.21,p=4.07e-18 ZNF93,FC=0.26,p=0.139326861 ZNF93,FC=-0.16,p=0.456179663 ZNF93,FC=0.85,p=0.000427695 ZNF682,FC=-1.39,p=6.16e-07 ZNF682,FC=-0.84,p=1.37e-07 ZNF90,FC=0.70,p=0.005162295 ZNF486,FC=-0.05,p=0.652184284 ZNF826,FC=0.28,p=0.114178278 ZNF826,FC=-0.32,p=0.126070872 ZNF626,FC=-0.83,p=5.65e-06 ZNF626,FC=-1.04,p=2.62e-16 ZNF626,FC=-0.28,p=0.066721274 ZNF85,FC=0.42,p=0.10600869 ZNF85,FC=0.26,p=0.017186678 ZNF430,FC=-0.52,p=1.88e-05 ZNF430,FC=0.20,p=0.079372999 ZNF708,FC=-0.32,p=0.009902614 ZNF738,FC=-0.97,p=9.92e-07 ZNF738,FC=0.78,p=3.34e-06 ZNF493,FC=-0.81,p=1.27e-06 ZNF493,FC=-0.57,p=0.000856742 ZNF493,FC=-0.69,p=0.000136569 ZNF493,FC=-1.56,p=3.9e-12 ZNF100,FC=-0.74,p=2.06e-07 ZNF43,FC=-0.36,p=0.011569714 ZNF43,FC=-0.41,p=0.002609527 ZNF208,FC=0.25,p=0.247040317 ZNF208,FC=-0.25,p=0.33581527 ZNF208,FC=0.04,p=0.863613498 ZNF257,FC=-0.26,p=0.329109259 ZNF492,FC=0.27,p=0.11110226 ZNF99,FC=0.16,p=0.513205253 ZNF99,FC=-0.20,p=0.479635777 ZNF91,FC=-0.85,p=4.89e-08 ZNF91,FC=-1.33,p=8.01e-10 C14orf167,FC=0.44,p=0.00822156 ZNF675,FC=0.13,p=0.418063433 ZNF681,FC=0.60,p=0.000215836 ZNF681,FC=-1.03,p=0.0002842 ZNF254,FC=-0.75,p=9.15e-06 ZNF254,FC=0.47,p=4.6e-07 ZNF254,FC=-0.42,p=0.003614242


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF43,FC=0.45,p=0.159299747 ZNF257,FC=-0.33,p=0.31926376

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF43,FC=0.31,p=0.542353661 ZNF257,FC=-0.48,p=0.335938231


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF486,FC=-0.05,p=0.449620316 ZNF85,FC=0.05,p=0.667779799 ZNF430,FC=-0.01,p=0.863422022 ZNF429,FC=0.01,p=0.821482716 ZNF43,FC=-0.02,p=0.638609568 ZNF208,FC=0.01,p=0.89057686 ZNF257,FC=0.15,p=0.293213466 ZNF492,FC=0.14,p=0.040771017 ZNF91,FC=-0.05,p=0.434586982

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZNF486,FC=-0.21,p=0.026323879 ZNF85,FC=-0.06,p=0.575144105 ZNF430,FC=-0.12,p=0.090461657 ZNF429,FC=-0.09,p=0.174152779 ZNF43,FC=-0.11,p=0.055357248 ZNF208,FC=-0.04,p=0.698256257 ZNF257,FC=0.14,p=0.331189512 ZNF492,FC=0.04,p=0.537717296 ZNF91,FC=-0.16,p=0.029279808


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

ZNF253,FC=0.25,p=4.66e-05 ZNF93,FC=-0.04,p=0.640648349 ZNF93,FC=0.39,p=1.16e-09 ZNF682,FC=0.80,p=0.000220918 ZNF85,FC=-0.28,p=0.000134935 ZNF430,FC=-0.23,p=0.000864608 ZNF493,FC=-0.30,p=0.028515257 ZNF43,FC=0.03,p=0.766599481 ZNF43,FC=0.61,p=4.86e-12 ZNF208,FC=-0.65,p=6.15e-05 ZNF257,FC=0.01,p=0.969834045 ZNF492,FC=-0.33,p=0.009169109 ZNF91,FC=0.26,p=0.006478404 ZNF675,FC=0.75,p=3.65e-07 ZNF254,FC=0.83,p=2.16e-11

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

CTD-2332E11, 5/50, 0.1 CTD-2332E11, 8/50, 0.16 RP11-26D24, 11/50, 0.22 RP11-26D24, 2/50, 0.04 RP11-165F1, 12/50, 0.24 RP11-165F1, 4/50, 0.08 CTC-451A6, 9/50, 0.18 CTC-451A6, 3/50, 0.06 CTD-2579N5, 14/50, 0.28 CTD-2579N5, 4/50, 0.08 RP11-359H18, 14/50, 0.28 RP11-359H18, 1/50, 0.02

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=16322280

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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