IGDB.NSCLC Chromosome View

Chromosome 19
19p13 19p12 19p11 19q11 19q12 19q13         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

CCNE1, up, 29/70(41%) CCNE1, 0.53%, 1/189

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.18,p=0.062521051 POP4,FC=0.01,p=0.944666712 CCNE1,FC=0.66,p=6.64e-06 CCNE1,FC=1.49,p=3.91e-13 C19orf2,FC=0.16,p=0.065636957 ZNF536,FC=0.01,p=0.945893048

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.63,p=1.44e-07 POP4,FC=0.15,p=0.150636712 CCNE1,FC=0.76,p=6.93e-05 CCNE1,FC=2.26,p=1.88e-12 C19orf2,FC=0.45,p=1.46e-05 ZNF536,FC=0.42,p=0.068683582


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.09,p=0.135380843 POP4,FC=0.19,p=0.063477027 PLEKHF1,FC=0.03,p=0.731407209 CCNE1,FC=1.20,p=9.28e-21 C19orf2,FC=0.11,p=0.386349402 C19orf2,FC=0.44,p=4.68e-05 C19orf2,FC=0.38,p=1.82e-07 C19orf2,FC=-0.18,p=0.064626108 ZNF536,FC=-0.33,p=3.93e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=-4.45,p=1.88e-153 POP4,FC=-1.08,p=3.21e-35 PLEKHF1,FC=-2.12,p=7.1e-45 CCNE1,FC=-0.58,p=7.89e-06 C19orf2,FC=2.56,p=3.21e-64 C19orf2,FC=-0.57,p=1.98e-07 C19orf2,FC=-1.38,p=7.87e-70 C19orf2,FC=1.53,p=1.12e-39 ZNF536,FC=-2.95,p=1.02e-41


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      INO80C,FC=0.25,p=0.064140851 UQCRFS1,FC=0.03,p=0.74606647 POP4,FC=0.96,p=1.61e-11 POP4,FC=0.45,p=4.56e-05 PLEKHF1,FC=0.26,p=0.020676882 C19orf12,FC=-0.57,p=0.001070309 C19orf12,FC=0.22,p=0.006628187 C19orf12,FC=0.22,p=0.045815345 CCNE1,FC=1.76,p=3.62e-22 C19orf2,FC=-0.07,p=0.645750583 C19orf2,FC=0.17,p=0.061898126 C19orf2,FC=-0.59,p=0.000396957 C19orf2,FC=-0.68,p=6.38e-07 ZNF536,FC=-0.06,p=0.770540724 TSHZ3,FC=-0.78,p=4.04e-12 TSHZ3,FC=-0.42,p=1.94e-06 TSHZ3,FC=-0.93,p=4.94e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      INO80C,FC=1.14,p=5.88e-12 UQCRFS1,FC=0.24,p=0.004510026 POP4,FC=0.72,p=8.91e-08 POP4,FC=0.90,p=1.18e-12 PLEKHF1,FC=-0.35,p=0.023775157 C19orf12,FC=-1.19,p=2.11e-09 C19orf12,FC=-0.01,p=0.860765594 C19orf12,FC=0.16,p=0.13555743 CCNE1,FC=2.38,p=1.36e-31 C19orf2,FC=0.00,p=0.976609919 C19orf2,FC=0.81,p=2.11e-12 C19orf2,FC=-0.99,p=2.65e-07 C19orf2,FC=-1.01,p=2.14e-09 ZNF536,FC=0.67,p=0.003577885 TSHZ3,FC=-0.27,p=0.00942139 TSHZ3,FC=0.11,p=0.240852507 TSHZ3,FC=-0.64,p=0.005791225


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.34,p=0.244117997 POP4,FC=1.18,p=0.001067192 CCNE1,FC=1.52,p=0.000327237

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.82,p=0.001818512 POP4,FC=1.10,p=0.005899294 CCNE1,FC=1.95,p=2.76e-05


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.03,p=0.720499842 POP4,FC=0.10,p=0.157108396 PLEKHF1,FC=-0.14,p=0.199116588 C19orf12,FC=0.00,p=0.977323 C19orf12,FC=0.01,p=0.707826186 CCNE1,FC=0.21,p=0.001484977 C19orf2,FC=0.06,p=0.469237297 ZNF536,FC=-0.04,p=0.643972772

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      UQCRFS1,FC=0.23,p=0.003119522 POP4,FC=0.18,p=0.032171237 PLEKHF1,FC=-0.20,p=0.10777695 C19orf12,FC=-0.01,p=0.910147645 C19orf12,FC=0.01,p=0.572968616 CCNE1,FC=0.32,p=5.63e-08 C19orf2,FC=0.34,p=0.003146914 ZNF536,FC=-0.01,p=0.91516297


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

UQCRFS1,FC=-0.14,p=0.021654016 POP4,FC=0.14,p=0.003632144 PLEKHF1,FC=0.15,p=0.134637588 CCNE1,FC=0.99,p=5.24e-10 C19orf2,FC=0.24,p=0.08326465 C19orf2,FC=0.50,p=5.96e-07 C19orf2,FC=0.45,p=1.88e-09 C19orf2,FC=-0.18,p=0.06023748 ZNF536,FC=-0.82,p=7.39e-19

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

CTC-459F4, 14/50, 0.28 CTC-459F4, 6/50, 0.12 CTD-2043I16, 12/50, 0.24 CTD-2043I16, 4/50, 0.08 CTD-2057D4, 14/50, 0.28 CTD-2057D4, 2/50, 0.04 CTD-2001J20, 23/50, 0.46 CTD-2001J20, 3/50, 0.06 CTC-416D1, 20/50, 0.4 CTC-416D1, 4/50, 0.08

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=12599234 PMID=15548372 PMID=15548372

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

PMID=10987304 D19S414, 4/13, 31% D19S433, 2/8, 25% PMID=15900585 D19S433, 2/5, 40%

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