IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      HUS1,FC=0.25,p=0.167579361 UPP1,FC=0.17,p=0.254526614 ZPBP,FC=0.15,p=0.360746801 IKZF1,FC=-0.05,p=0.660276038 IKZF1,FC=-0.23,p=0.051615182 DDC,FC=0.52,p=0.09671798 GRB10,FC=-0.06,p=0.637619159 COBL,FC=-1.29,p=1.54e-08

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      HUS1,FC=0.20,p=0.453392125 UPP1,FC=-0.49,p=0.014570532 ZPBP,FC=-0.06,p=0.76792784 IKZF1,FC=-0.17,p=0.209401433 IKZF1,FC=-0.39,p=0.006315701 DDC,FC=-0.21,p=0.287330101 GRB10,FC=0.10,p=0.503741415 COBL,FC=-3.00,p=4.67e-17


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNS3,FC=-1.08,p=5.6e-45 C7orf69,FC=-0.15,p=0.185614586 HUS1,FC=1.95,p=1.44e-48 HUS1,FC=0.17,p=0.091709694 HUS1,FC=0.11,p=0.13645926 UPP1,FC=0.22,p=0.073871951 ZPBP,FC=0.42,p=0.001138028 IKZF1,FC=-0.18,p=0.132905329 IKZF1,FC=-0.14,p=0.061877159 IKZF1,FC=0.15,p=0.289287756 DDC,FC=0.23,p=0.191388526 DDC,FC=-0.47,p=0.041717439 GRB10,FC=0.03,p=0.848653006 GRB10,FC=0.47,p=4.25e-06 GRB10,FC=-0.27,p=0.00226419 GRB10,FC=0.30,p=3.6e-06 COBL,FC=-1.05,p=1.62e-11

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNS3,FC=-3.53,p=3.14e-111 C7orf69,FC=3.93,p=3.03e-99 HUS1,FC=1.83,p=3.62e-21 HUS1,FC=1.76,p=4.04e-20 HUS1,FC=-3.07,p=7.2e-103 UPP1,FC=0.67,p=4.39e-11 ZPBP,FC=2.15,p=6.31e-38 IKZF1,FC=1.31,p=6.63e-34 IKZF1,FC=-3.70,p=1.08e-69 IKZF1,FC=0.63,p=0.000128043 DDC,FC=0.26,p=0.011092159 DDC,FC=1.67,p=2.31e-36 GRB10,FC=1.25,p=5.51e-23 GRB10,FC=2.39,p=6.53e-80 GRB10,FC=-0.54,p=1.69e-13 GRB10,FC=-0.35,p=4.09e-05 COBL,FC=-0.59,p=3.59e-10


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ATP5SL,FC=-1.84,p=1.86e-38 TNS3,FC=-0.68,p=6.32e-18 TNS3,FC=0.44,p=0.020855561 PKD1L1,FC=0.22,p=0.25128893 C7orf69,FC=0.15,p=0.410587047 HUS1,FC=0.34,p=0.027016397 HUS1,FC=0.14,p=0.19452623 HUS1,FC=0.52,p=1.65e-09 SUNC1,FC=0.60,p=0.008506763 C7orf57,FC=-0.83,p=0.002924035 UPP1,FC=-0.14,p=0.281535384 ABCA13,FC=-0.40,p=0.222064276 ABCA13,FC=-0.43,p=0.101473853 ABCA13,FC=-0.11,p=0.67532459 ZPBP,FC=-0.25,p=0.178540464 IKZF1,FC=0.37,p=0.085805426 IKZF1,FC=-0.84,p=2.56e-09 IKZF1,FC=-0.61,p=1.08e-07 IKZF1,FC=-0.75,p=1.29e-06 IKZF1,FC=-0.07,p=0.583327777 IKZF1,FC=0.45,p=0.034627091 IKZF1,FC=0.06,p=0.776893808 FIGNL1,FC=1.09,p=1.02e-16 FIGNL1,FC=0.97,p=5e-21 DDC,FC=-0.24,p=0.20809301 DDC,FC=-1.04,p=0.002271502 DDC,FC=0.23,p=0.339037619 GRB10,FC=-0.71,p=7.68e-05 GRB10,FC=0.12,p=0.32910925 GRB10,FC=0.24,p=0.021172491 GRB10,FC=0.10,p=0.369098495 COBL,FC=-1.26,p=2.54e-10 COBL,FC=-1.47,p=1.33e-08 COBL,FC=-0.16,p=0.435169248 PELO,FC=-1.42,p=4.17e-37 POM121L12,FC=0.56,p=0.001732865 POM121L12,FC=1.01,p=1.1e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ATP5SL,FC=-2.16,p=1.52e-29 TNS3,FC=-1.45,p=1.44e-23 TNS3,FC=0.67,p=0.001819187 PKD1L1,FC=1.18,p=2.78e-08 C7orf69,FC=0.10,p=0.611055614 HUS1,FC=0.45,p=0.001399051 HUS1,FC=0.04,p=0.750024753 HUS1,FC=0.58,p=2.79e-09 SUNC1,FC=-0.01,p=0.947934699 C7orf57,FC=-2.67,p=6.42e-14 UPP1,FC=-0.52,p=0.000450183 ABCA13,FC=1.84,p=3.72e-06 ABCA13,FC=1.39,p=3.36e-06 ABCA13,FC=1.58,p=2.3e-05 ZPBP,FC=0.28,p=0.165723315 IKZF1,FC=-0.36,p=0.101452112 IKZF1,FC=-1.68,p=8.72e-12 IKZF1,FC=-1.03,p=2.16e-11 IKZF1,FC=-1.55,p=1.64e-12 IKZF1,FC=-0.69,p=6.39e-05 IKZF1,FC=0.36,p=0.129674055 IKZF1,FC=0.04,p=0.862694067 FIGNL1,FC=1.34,p=7.81e-15 FIGNL1,FC=1.07,p=2.74e-15 DDC,FC=0.05,p=0.832870092 DDC,FC=-2.47,p=6.32e-17 DDC,FC=-0.39,p=0.05264569 GRB10,FC=-0.85,p=6.24e-08 GRB10,FC=0.26,p=0.070062517 GRB10,FC=0.61,p=3.69e-07 GRB10,FC=0.09,p=0.390904183 COBL,FC=-2.99,p=6.35e-30 COBL,FC=-3.84,p=3.18e-33 COBL,FC=-0.93,p=1.12e-06 PELO,FC=-1.69,p=8.08e-32 POM121L12,FC=0.96,p=4.86e-07 POM121L12,FC=1.72,p=2.58e-09


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZPBP,FC=-1.05,p=0.041146063 DDC,FC=0.32,p=0.564490808 GRB10,FC=0.34,p=0.398656649

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ZPBP,FC=-0.62,p=0.163601159 DDC,FC=0.15,p=0.804856146 GRB10,FC=0.27,p=0.415522226


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PKD1L1,FC=0.27,p=0.001063141 HUS1,FC=0.03,p=0.024370664 SUNC1,FC=0.04,p=0.754377633 UPP1,FC=-0.08,p=0.119328983 UPP1,FC=-0.06,p=0.54074574 ABCA13,FC=-0.01,p=0.836306403 ABCA13,FC=0.02,p=0.730663673 ZPBP,FC=-0.10,p=0.001208668 FIGNL1,FC=0.05,p=0.111890023 DDC,FC=0.07,p=0.400753844 GRB10,FC=0.17,p=2.07e-05 GRB10,FC=-0.06,p=0.652148314

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PKD1L1,FC=0.28,p=0.000780751 HUS1,FC=0.05,p=0.019000999 SUNC1,FC=-0.05,p=0.667653222 UPP1,FC=-0.08,p=0.195786059 UPP1,FC=-0.07,p=0.531944911 ABCA13,FC=0.01,p=0.588474717 ABCA13,FC=0.17,p=0.015662706 ZPBP,FC=-0.13,p=0.00058928 FIGNL1,FC=0.07,p=0.022930533 DDC,FC=0.05,p=0.4799656 GRB10,FC=0.16,p=0.000334413 GRB10,FC=0.03,p=0.864335713


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

TNS3,FC=-1.17,p=4.26e-44 C7orf69,FC=0.21,p=0.090392687 HUS1,FC=2.18,p=1.02e-48 HUS1,FC=0.32,p=0.002149024 HUS1,FC=0.19,p=0.01512191 UPP1,FC=0.24,p=0.032776433 ZPBP,FC=-0.08,p=0.650975937 IKZF1,FC=-0.27,p=0.030370911 IKZF1,FC=0.13,p=0.096919968 IKZF1,FC=0.40,p=0.00926914 DDC,FC=0.11,p=0.512573314 DDC,FC=-0.92,p=7.41e-05 GRB10,FC=0.26,p=0.122541261 GRB10,FC=0.30,p=0.006582482 GRB10,FC=-0.32,p=0.000347952 GRB10,FC=0.18,p=0.006970893 COBL,FC=-1.21,p=2e-11

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-95J15, 4/50, 0.08 RP11-95J15, 4/50, 0.08 RP11-21H20, 10/50, 0.2 RP11-21H20, 0/50, 0 RP4-815D20, 3/50, 0.06 RP4-815D20, 7/50, 0.14 RP11-127A24, 7/50, 0.14 RP11-127A24, 7/50, 0.14 RP11-95E2, 2/50, 0.04 RP11-95E2, 1/50, 0.02 RP4-718N17, 3/50, 0.06 RP4-718N17, 7/50, 0.14 RP11-324M21, 4/50, 0.08 RP11-324M21, 2/50, 0.04

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12599234 PMID=16322280

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D7S1818, 20/29, 69% Our unpublished data D7S506, 11/20, 55% Our unpublished data D7S2475, 14/31, 45% D7S1818, 2/11, 18% PMID=15900585 D7S1818, 3/12, 25%

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