IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Move   
-
        
   Zoom

    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

AQP1, up, 18/44(41%) , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=-0.16,p=0.399750365 ITGB8,FC=0.47,p=0.075392493 SP4,FC=-0.02,p=0.926491209 RAPGEF5,FC=-1.24,p=8.52e-17 IL6,FC=-1.92,p=9.52e-09 NUPL2,FC=0.69,p=2.65e-07 GPNMB,FC=-0.28,p=0.079122445 IGF2BP3,FC=1.33,p=7.84e-09 TRA2A,FC=0.53,p=2.5e-07 TRA2A,FC=0.03,p=0.745769345 NPY,FC=0.40,p=0.067529435 MPP6,FC=0.93,p=0.000370896 DFNA5,FC=0.02,p=0.901220775 OSBPL3,FC=0.58,p=7.07e-05 CYCS,FC=0.84,p=1.08e-10 NFE2L3,FC=0.67,p=0.005173592 HNRNPA2B1,FC=0.39,p=1.08e-07 SKAP2,FC=-0.44,p=0.000765489 HOXA1,FC=0.33,p=0.123412164 HOXA2,FC=-0.85,p=0.000293423 HOXA4,FC=-1.39,p=8.18e-16 HOXA4,FC=-1.99,p=2.47e-20 HOXA4,FC=-1.91,p=2.82e-16 HOXA5,FC=-2.61,p=4.51e-18 HOXA9,FC=0.23,p=0.038683265 HOXA9,FC=0.45,p=0.03594254 HOXA10,FC=0.43,p=0.049437486 HOXA11,FC=0.37,p=0.000373302 HOXA11,FC=0.40,p=0.002530158 EVX1,FC=0.17,p=0.312463677 TAX1BP1,FC=0.27,p=0.000534823 TAX1BP1,FC=0.30,p=0.001872873 CREB5,FC=-1.22,p=2.38e-06 CPVL,FC=-1.11,p=3.02e-08 CHN2,FC=-0.58,p=0.000932099 SCRN1,FC=0.43,p=0.000878126 HCG2P7,FC=0.16,p=0.60771892 DKFZP586I1420,FC=0.45,p=0.001054196 GGCT,FC=1.06,p=2.15e-13 GARS,FC=0.65,p=1.26e-12 GARS,FC=0.57,p=1.69e-06 CRHR2,FC=0.74,p=1.68e-06 CRHR2,FC=1.00,p=3.83e-09 CRHR2,FC=0.12,p=0.467673031 AQP1,FC=-2.28,p=2.06e-17 GHRHR,FC=0.11,p=0.60791648 GHRHR,FC=0.38,p=0.012239816 GHRHR,FC=-0.06,p=0.612226857 ADCYAP1R1,FC=0.05,p=0.750472388 PDE1C,FC=-0.32,p=0.134710799 PDE1C,FC=0.08,p=0.635655137

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=-0.27,p=0.151016351 ITGB8,FC=0.87,p=0.012843979 SP4,FC=-0.37,p=0.197037142 RAPGEF5,FC=-1.15,p=1.15e-10 IL6,FC=-2.27,p=2.23e-05 NUPL2,FC=0.75,p=3.15e-05 GPNMB,FC=0.69,p=0.003373641 IGF2BP3,FC=2.61,p=2.85e-12 TRA2A,FC=0.59,p=7.24e-05 TRA2A,FC=-0.03,p=0.756423348 NPY,FC=0.34,p=0.269044429 MPP6,FC=1.32,p=0.000109972 DFNA5,FC=0.51,p=0.003641207 OSBPL3,FC=0.65,p=0.00165514 CYCS,FC=1.24,p=1.77e-10 NFE2L3,FC=0.81,p=0.014010004 HNRNPA2B1,FC=0.58,p=9.77e-08 SKAP2,FC=-0.65,p=1.05e-06 HOXA1,FC=0.81,p=0.004675573 HOXA2,FC=-0.84,p=0.016814095 HOXA4,FC=-0.93,p=0.005106038 HOXA4,FC=-1.61,p=1.42e-07 HOXA4,FC=-1.76,p=1.73e-05 HOXA5,FC=-2.33,p=5.87e-08 HOXA9,FC=0.23,p=0.126360792 HOXA9,FC=0.90,p=0.008519665 HOXA10,FC=1.10,p=0.000349527 HOXA11,FC=0.62,p=8.3e-06 HOXA11,FC=0.63,p=0.003288149 EVX1,FC=0.19,p=0.458868818 TAX1BP1,FC=0.01,p=0.869998294 TAX1BP1,FC=-0.25,p=0.012799193 CREB5,FC=-1.38,p=0.000214535 CPVL,FC=-1.38,p=3.49e-10 CHN2,FC=-1.08,p=1.36e-07 SCRN1,FC=0.54,p=1.32e-05 HCG2P7,FC=-0.15,p=0.737807139 DKFZP586I1420,FC=0.42,p=0.017502631 GGCT,FC=1.45,p=1.2e-14 GARS,FC=0.83,p=1.39e-09 GARS,FC=0.65,p=4.77e-06 CRHR2,FC=0.85,p=4.53e-05 CRHR2,FC=1.11,p=3.29e-05 CRHR2,FC=0.33,p=0.046265718 AQP1,FC=-3.18,p=7.97e-26 GHRHR,FC=0.09,p=0.760428729 GHRHR,FC=0.51,p=0.025009571 GHRHR,FC=-0.05,p=0.747863955 ADCYAP1R1,FC=0.30,p=0.153880794 PDE1C,FC=-0.73,p=0.014507543 PDE1C,FC=-0.06,p=0.808476428


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=-0.06,p=0.624455545 ITGB8,FC=0.35,p=0.021017419 ITGB8,FC=0.13,p=0.229522846 USP22,FC=0.15,p=0.201039156 SP4,FC=-0.67,p=4.84e-17 RAPGEF5,FC=-1.35,p=1.09e-46 RAPGEF5,FC=-0.18,p=0.002772491 IL6,FC=-1.65,p=6.5e-30 KLHL7,FC=1.40,p=3.12e-23 KLHL7,FC=0.97,p=1.12e-27 NUPL2,FC=0.63,p=7.08e-26 GPNMB,FC=-0.46,p=0.000109138 IGF2BP3,FC=1.54,p=1.5e-15 IGF2BP3,FC=1.53,p=1.18e-12 TRA2A,FC=0.14,p=0.011478611 TRA2A,FC=0.49,p=0.000174567 TRA2A,FC=0.17,p=0.20906656 NPY,FC=-0.20,p=0.052745565 MPP6,FC=2.04,p=1.35e-30 DFNA5,FC=0.05,p=0.590034727 OSBPL3,FC=0.85,p=6.55e-22 OSBPL3,FC=0.31,p=8.95e-05 CYCS,FC=0.14,p=0.397288946 CYCS,FC=0.62,p=1.38e-20 NPVF,FC=-0.49,p=0.000639826 NFE2L3,FC=0.69,p=1.52e-15 HNRNPA2B1,FC=0.29,p=1.77e-10 CBX3,FC=1.18,p=1.81e-36 CBX3,FC=0.60,p=5.94e-24 SNX10,FC=-0.66,p=2.79e-08 SKAP2,FC=0.16,p=0.144910786 SKAP2,FC=0.44,p=1.56e-06 SKAP2,FC=-0.28,p=0.002864115 HOXA1,FC=0.29,p=0.118562019 HOXA2,FC=-0.87,p=1.94e-07 HOXA3,FC=0.11,p=0.35840341 HOXA4,FC=-1.26,p=7.43e-45 HOXA5,FC=-2.03,p=7.33e-94 HOXA6,FC=0.09,p=0.27224121 HOXA7,FC=-0.44,p=9.06e-05 HOXA9,FC=0.01,p=0.924848601 HOXA9,FC=-0.18,p=0.071319668 HOXA10,FC=0.89,p=3.68e-07 HOXA10,FC=1.14,p=7.23e-08 HOXA11,FC=-0.76,p=2.64e-09 HOXA11,FC=-0.20,p=0.042673986 EVX1,FC=-0.03,p=0.714787697 TAX1BP1,FC=0.52,p=2.1e-13 TAX1BP1,FC=0.53,p=2.21e-07 TAX1BP1,FC=0.24,p=9.39e-05 CREB5,FC=-1.30,p=6.31e-18 TRIL,FC=-0.67,p=9.12e-11 TRIL,FC=-0.17,p=0.07415926 CPVL,FC=-0.86,p=7.38e-13 CHN2,FC=-0.51,p=2.12e-09 CHN2,FC=-0.29,p=1.4e-06 CHN2,FC=0.22,p=0.113909454 SCRN1,FC=0.61,p=4.74e-12 HCG2P7,FC=0.11,p=0.398666338 FKBP14,FC=0.82,p=4.11e-24 DKFZP586I1420,FC=-0.22,p=0.001040793 NOD1,FC=-0.58,p=5.66e-17 GGCT,FC=1.52,p=5.64e-63 GARS,FC=0.54,p=3.89e-22 CRHR2,FC=-0.50,p=0.000271026 CRHR2,FC=-0.25,p=2.63e-05 AQP1,FC=-2.31,p=9.76e-41 AQP1,FC=-1.39,p=4.42e-21 GHRHR,FC=-0.72,p=1.03e-09 GHRHR,FC=-0.14,p=0.280381267 ADCYAP1R1,FC=-0.44,p=0.00042229 NEUROD6,FC=-0.64,p=2.11e-11 C7orf16,FC=-0.76,p=1.88e-08 PDE1C,FC=-0.54,p=3.87e-19

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=1.32,p=8.45e-21 ITGB8,FC=1.93,p=1.08e-37 ITGB8,FC=5.64,p=3.18e-159 USP22,FC=0.28,p=0.031497405 SP4,FC=-0.06,p=0.581722524 RAPGEF5,FC=-0.03,p=0.824723406 RAPGEF5,FC=0.62,p=1.27e-14 IL6,FC=-2.13,p=2.4e-27 KLHL7,FC=3.19,p=5.71e-63 KLHL7,FC=-2.42,p=1.5e-69 NUPL2,FC=-3.03,p=5.32e-48 GPNMB,FC=-1.12,p=3.29e-25 IGF2BP3,FC=0.99,p=4.43e-23 IGF2BP3,FC=3.51,p=3.33e-89 TRA2A,FC=0.02,p=0.849105494 TRA2A,FC=-1.69,p=1.12e-11 TRA2A,FC=-1.92,p=1.41e-19 NPY,FC=-0.36,p=0.000344685 MPP6,FC=3.46,p=4.32e-72 DFNA5,FC=-0.50,p=0.00011452 OSBPL3,FC=1.64,p=1.51e-45 OSBPL3,FC=-0.04,p=0.742223996 CYCS,FC=3.03,p=1.03e-50 CYCS,FC=-5.34,p=6.7e-75 NPVF,FC=2.02,p=3.48e-31 NFE2L3,FC=-0.27,p=0.0339975 HNRNPA2B1,FC=-1.69,p=4.24e-82 CBX3,FC=1.40,p=3.66e-45 CBX3,FC=-6.57,p=5.4e-115 SNX10,FC=-0.30,p=0.00012234 SKAP2,FC=1.67,p=1.94e-17 SKAP2,FC=-3.63,p=4.78e-73 SKAP2,FC=-0.43,p=1.16e-12 HOXA1,FC=2.30,p=9.77e-76 HOXA2,FC=1.88,p=1.83e-29 HOXA3,FC=-1.40,p=2.34e-26 HOXA4,FC=0.23,p=0.011786515 HOXA5,FC=-4.94,p=7.12e-91 HOXA6,FC=-0.07,p=0.627376296 HOXA7,FC=0.93,p=3.7e-05 HOXA9,FC=1.31,p=7.88e-10 HOXA9,FC=5.29,p=8.04e-150 HOXA10,FC=2.96,p=4.25e-79 HOXA10,FC=4.63,p=6.56e-90 HOXA11,FC=1.06,p=1.89e-23 HOXA11,FC=5.09,p=1.44e-34 EVX1,FC=1.57,p=1.63e-23 TAX1BP1,FC=-1.63,p=3.17e-79 TAX1BP1,FC=1.21,p=6.33e-31 TAX1BP1,FC=-2.58,p=2.93e-94 CREB5,FC=-2.11,p=3.58e-29 TRIL,FC=0.45,p=1.53e-07 TRIL,FC=-2.15,p=1.56e-49 CPVL,FC=-2.12,p=1.37e-81 CHN2,FC=-0.92,p=5.22e-09 CHN2,FC=-4.20,p=3.16e-126 CHN2,FC=4.71,p=8.36e-85 SCRN1,FC=1.89,p=6.01e-75 HCG2P7,FC=-0.28,p=0.093068512 FKBP14,FC=1.63,p=5.33e-72 DKFZP586I1420,FC=-1.12,p=9.4e-25 NOD1,FC=1.10,p=8.48e-21 GGCT,FC=-4.38,p=4.91e-119 GARS,FC=-3.44,p=2.16e-128 CRHR2,FC=1.81,p=1.66e-33 CRHR2,FC=-0.53,p=4.23e-09 AQP1,FC=-3.26,p=2.43e-116 AQP1,FC=-3.47,p=1.64e-70 GHRHR,FC=2.52,p=4.14e-54 GHRHR,FC=2.53,p=2.03e-54 ADCYAP1R1,FC=0.83,p=7.74e-12 NEUROD6,FC=3.38,p=1.75e-70 C7orf16,FC=-0.25,p=0.103915201 PDE1C,FC=-1.25,p=1.09e-31


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=0.71,p=4.05e-05 TWISTNB,FC=-0.17,p=0.067684997 TMEM196,FC=0.09,p=0.565560808 TMEM196,FC=0.05,p=0.827945108 MACC1,FC=0.43,p=0.005049474 MACC1,FC=-0.03,p=0.844990805 MACC1,FC=0.70,p=0.000780095 ITGB8,FC=1.32,p=2.11e-07 ITGB8,FC=0.59,p=0.005328288 ITGB8,FC=0.52,p=0.023185009 ITGB8,FC=0.21,p=0.123385692 ABCB5,FC=0.27,p=0.106950336 ABCB5,FC=0.33,p=0.10814504 ABCB5,FC=-0.57,p=0.012618531 ABCB5,FC=0.77,p=2.06e-06 ZNF219,FC=-0.20,p=0.206718074 SP8,FC=1.46,p=5.21e-07 SP8,FC=0.53,p=0.005324598 USP22,FC=0.24,p=0.151767077 SP4,FC=0.27,p=0.073394332 SP4,FC=-0.09,p=0.304166288 DNAH11,FC=-0.27,p=0.178177474 DNAH11,FC=0.25,p=0.134826433 ZNF100,FC=0.42,p=0.005792512 CDCA7L,FC=0.13,p=0.317973627 RAPGEF5,FC=-1.19,p=3.03e-25 RAPGEF5,FC=0.19,p=0.126469771 RAPGEF5,FC=0.82,p=0.000338426 RAPGEF5,FC=1.05,p=5.84e-10 IL6,FC=-2.67,p=6.21e-31 FAM126A,FC=0.54,p=0.000399235 FAM126A,FC=0.04,p=0.838740357 FAM126A,FC=0.34,p=0.111014561 KLHL7,FC=0.52,p=0.002557315 KLHL7,FC=0.60,p=1.16e-05 KLHL7,FC=0.13,p=0.086285956 NUPL2,FC=0.50,p=8.83e-11 GPNMB,FC=-0.48,p=0.024227972 GPNMB,FC=-0.69,p=1.41e-05 C7orf30,FC=0.30,p=8.1e-05 C7orf30,FC=0.11,p=0.32250211 C7orf30,FC=0.21,p=0.072776907 C7orf30,FC=0.24,p=0.004003259 IGF2BP3,FC=2.06,p=4.04e-12 IGF2BP3,FC=1.91,p=1.08e-12 IGF2BP3,FC=0.81,p=3.7e-05 TRA2A,FC=0.06,p=0.623015283 TRA2A,FC=0.21,p=0.320368075 TRA2A,FC=0.31,p=0.05022197 TRA2A,FC=0.54,p=2.14e-10 CCDC126,FC=-0.17,p=0.055124017 CCDC126,FC=0.04,p=0.781806141 C7orf46,FC=-0.17,p=0.263194288 STK31,FC=1.36,p=1.11e-11 NPY,FC=0.19,p=0.373908114 MPP6,FC=0.91,p=4.43e-06 DFNA5,FC=0.33,p=0.011787154 OSBPL3,FC=0.59,p=1.62e-08 OSBPL3,FC=0.18,p=0.143268192 CYCS,FC=0.20,p=0.30008251 CYCS,FC=-0.40,p=4.65e-05 CYCS,FC=0.44,p=2.44e-09 CYCS,FC=-1.15,p=1.35e-08 C7orf31,FC=-0.62,p=2.88e-06 NPVF,FC=-0.05,p=0.798066206 NFE2L3,FC=0.56,p=0.000180642 NFE2L3,FC=0.86,p=2.36e-11 HNRNPA2B1,FC=-0.30,p=5.31e-05 HNRNPA2B1,FC=0.15,p=0.002257826 HNRNPA2B1,FC=0.14,p=0.314822061 HNRNPA2B1,FC=-0.19,p=0.11865399 CBX3,FC=0.86,p=5.67e-16 CBX3,FC=0.69,p=6.11e-20 CBX3,FC=0.78,p=1.82e-05 SNX10,FC=-0.79,p=1.59e-09 SKAP2,FC=-0.15,p=0.336452535 SKAP2,FC=0.01,p=0.943747803 SKAP2,FC=-0.32,p=0.000259622 SKAP2,FC=-0.59,p=1.35e-07 HOXA1,FC=0.78,p=0.002324035 HOXA2,FC=-0.86,p=9.06e-07 HOXA3,FC=-0.48,p=0.002576913 HOXA3,FC=0.33,p=0.044507378 HOXA4,FC=-1.35,p=2.03e-19 HOXA5,FC=-1.47,p=2.5e-26 HOXA6,FC=0.28,p=0.04430363 HOXA7,FC=-0.37,p=0.005686795 HOXA7,FC=-0.63,p=4.51e-05 HOXA9,FC=-0.30,p=0.191375808 HOXA9,FC=-0.12,p=0.57564532 HOXA10,FC=2.26,p=8.06e-16 HOXA10,FC=1.31,p=4.75e-09 HOXA11,FC=0.16,p=0.385772712 HOXA11,FC=0.94,p=3.01e-06 HOXA11AS,FC=0.31,p=0.04972744 HOXA11AS,FC=0.19,p=0.219525087 HOXA13,FC=0.57,p=0.033750841 EVX1,FC=0.37,p=0.028289187 EVX1,FC=-1.04,p=6.14e-12 HIBADH,FC=1.21,p=2.49e-12 HIBADH,FC=0.64,p=9.03e-05 HIBADH,FC=0.79,p=6.25e-16 TAX1BP1,FC=0.20,p=0.005813149 TAX1BP1,FC=0.11,p=0.076927123 TAX1BP1,FC=0.26,p=0.017030314 JAZF1,FC=-0.25,p=0.076828184 JAZF1,FC=-1.05,p=3.69e-22 CREB5,FC=-1.06,p=7.2e-11 CREB5,FC=-0.93,p=1.92e-09 CREB5,FC=-1.64,p=3.64e-21 TRIL,FC=-0.66,p=3.1e-05 TRIL,FC=0.05,p=0.751857465 CPVL,FC=-0.96,p=7.34e-13 CHN2,FC=0.37,p=0.007016517 CHN2,FC=-0.36,p=0.06186617 CHN2,FC=-0.95,p=2.97e-08 PRR15,FC=0.53,p=0.028146154 WIPF3,FC=0.44,p=0.022289388 SCRN1,FC=0.40,p=0.001390018 HCG2P7,FC=-0.27,p=0.169877462 FKBP14,FC=0.29,p=0.009823621 FKBP14,FC=0.35,p=0.01106173 PLEKHA8,FC=-0.18,p=0.216173694 PLEKHA8,FC=1.14,p=4.34e-09 PLEKHA8,FC=0.94,p=6.99e-25 C7orf41,FC=-0.07,p=0.640345635 C7orf41,FC=-1.12,p=8.05e-13 ZNRF2,FC=0.17,p=0.123820566 DKFZP586I1420,FC=-0.36,p=4.91e-05 NOD1,FC=-0.37,p=0.038860602 NOD1,FC=0.01,p=0.911767179 NOD1,FC=-0.10,p=0.30303189 GGCT,FC=1.17,p=5.47e-35 GARS,FC=0.59,p=1.93e-15 CRHR2,FC=0.07,p=0.6837405 CRHR2,FC=-0.20,p=0.355419397 INMT,FC=-3.49,p=2.14e-45 FAM188B,FC=-0.28,p=0.000253069 FAM188B,FC=0.05,p=0.761253895 AQP1,FC=-1.64,p=2e-13 AQP1,FC=-2.31,p=3.82e-24 GHRHR,FC=0.27,p=0.166894977 GHRHR,FC=0.35,p=0.042474002 ADCYAP1R1,FC=0.28,p=0.121771318 NEUROD6,FC=0.18,p=0.228260844 CCDC129,FC=0.66,p=0.000717693 CCDC129,FC=0.44,p=0.016105087 C7orf16,FC=-0.16,p=0.368398504 PDE1C,FC=-0.12,p=0.376617014 PDE1C,FC=-0.01,p=0.963331406

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=0.76,p=0.000169312 TWISTNB,FC=-0.33,p=0.000239407 TMEM196,FC=0.13,p=0.466464194 TMEM196,FC=0.35,p=0.170234865 MACC1,FC=-0.59,p=3.91e-05 MACC1,FC=-1.93,p=6.12e-18 MACC1,FC=-0.33,p=0.069591723 ITGB8,FC=2.60,p=4.8e-18 ITGB8,FC=1.43,p=2.7e-10 ITGB8,FC=1.79,p=2.13e-14 ITGB8,FC=1.02,p=1.21e-11 ABCB5,FC=0.01,p=0.9439765 ABCB5,FC=0.48,p=0.044742083 ABCB5,FC=-0.69,p=0.005698492 ABCB5,FC=0.93,p=2.98e-06 ZNF219,FC=-0.25,p=0.174185937 SP8,FC=1.42,p=5.31e-07 SP8,FC=1.02,p=1.03e-05 USP22,FC=0.53,p=0.002146936 SP4,FC=0.61,p=0.000952744 SP4,FC=-0.53,p=3.14e-09 DNAH11,FC=-1.03,p=1.9e-07 DNAH11,FC=-0.47,p=0.02400224 ZNF100,FC=0.77,p=5.17e-05 CDCA7L,FC=0.60,p=2.61e-06 RAPGEF5,FC=-1.50,p=4.44e-26 RAPGEF5,FC=0.19,p=0.03938643 RAPGEF5,FC=1.16,p=5.05e-05 RAPGEF5,FC=0.92,p=0.000140234 IL6,FC=-2.41,p=3.49e-16 FAM126A,FC=0.83,p=9.36e-07 FAM126A,FC=-0.29,p=0.197785446 FAM126A,FC=-0.15,p=0.527756896 KLHL7,FC=0.47,p=0.008555263 KLHL7,FC=0.69,p=1.36e-06 KLHL7,FC=0.04,p=0.612637996 NUPL2,FC=0.49,p=2.52e-05 GPNMB,FC=1.04,p=1.24e-05 GPNMB,FC=0.34,p=0.023519973 C7orf30,FC=-0.06,p=0.381273997 C7orf30,FC=-0.28,p=0.033157555 C7orf30,FC=0.23,p=0.049628413 C7orf30,FC=0.04,p=0.642229853 IGF2BP3,FC=3.19,p=3.99e-20 IGF2BP3,FC=3.32,p=8.37e-34 IGF2BP3,FC=1.23,p=1.4e-08 TRA2A,FC=-0.34,p=0.003052738 TRA2A,FC=-0.12,p=0.471479126 TRA2A,FC=-0.02,p=0.87434481 TRA2A,FC=0.64,p=1.71e-10 CCDC126,FC=-0.58,p=4.8e-08 CCDC126,FC=-0.34,p=0.013837499 C7orf46,FC=-1.43,p=2.65e-12 STK31,FC=0.95,p=8.64e-06 NPY,FC=0.62,p=0.005284293 MPP6,FC=1.02,p=2.58e-06 DFNA5,FC=0.60,p=5.48e-05 OSBPL3,FC=0.51,p=8.25e-07 OSBPL3,FC=-0.24,p=0.019585912 CYCS,FC=-0.01,p=0.955220483 CYCS,FC=-0.41,p=1.39e-05 CYCS,FC=0.65,p=2.96e-14 CYCS,FC=-1.49,p=1.03e-11 C7orf31,FC=-0.72,p=4.06e-07 NPVF,FC=-0.48,p=0.020917831 NFE2L3,FC=0.16,p=0.284968713 NFE2L3,FC=0.74,p=6.04e-09 HNRNPA2B1,FC=-0.41,p=3.8e-07 HNRNPA2B1,FC=0.41,p=3.21e-11 HNRNPA2B1,FC=-0.16,p=0.354496885 HNRNPA2B1,FC=-0.16,p=0.101881493 CBX3,FC=0.55,p=4.24e-06 CBX3,FC=0.82,p=6.16e-24 CBX3,FC=0.58,p=3.55e-08 SNX10,FC=-1.27,p=5.72e-14 SKAP2,FC=-0.58,p=0.000794994 SKAP2,FC=-0.17,p=0.19179074 SKAP2,FC=-0.55,p=8.31e-11 SKAP2,FC=-1.19,p=6.75e-19 HOXA1,FC=2.21,p=5.66e-14 HOXA2,FC=-1.03,p=5.77e-07 HOXA3,FC=0.04,p=0.774362141 HOXA3,FC=0.72,p=1.94e-06 HOXA4,FC=-0.64,p=6.75e-05 HOXA5,FC=-1.61,p=4.22e-24 HOXA6,FC=0.66,p=5.62e-05 HOXA7,FC=-0.03,p=0.854652192 HOXA7,FC=-0.24,p=0.101446498 HOXA9,FC=-0.34,p=0.219177108 HOXA9,FC=0.49,p=0.033344698 HOXA10,FC=3.72,p=4.98e-30 HOXA10,FC=2.18,p=2.31e-18 HOXA11,FC=0.16,p=0.41574003 HOXA11,FC=1.39,p=5.79e-10 HOXA11AS,FC=0.93,p=2.57e-08 HOXA11AS,FC=0.46,p=0.014576801 HOXA13,FC=1.44,p=3.79e-06 EVX1,FC=0.19,p=0.300435334 EVX1,FC=-1.18,p=1.56e-11 HIBADH,FC=1.18,p=7.72e-09 HIBADH,FC=0.16,p=0.208399542 HIBADH,FC=0.50,p=3.64e-09 TAX1BP1,FC=-0.07,p=0.289902784 TAX1BP1,FC=-0.37,p=2.33e-06 TAX1BP1,FC=-0.50,p=0.000102329 JAZF1,FC=-0.19,p=0.129850944 JAZF1,FC=-1.35,p=3.78e-22 CREB5,FC=-0.93,p=5.74e-09 CREB5,FC=-0.75,p=1.16e-05 CREB5,FC=-1.65,p=5.17e-17 TRIL,FC=-0.56,p=0.000179563 TRIL,FC=0.30,p=0.047132665 CPVL,FC=-1.32,p=6.31e-13 CHN2,FC=0.81,p=1.75e-06 CHN2,FC=-0.64,p=0.00259604 CHN2,FC=-1.87,p=2.29e-18 PRR15,FC=0.91,p=3.16e-05 WIPF3,FC=0.97,p=6.81e-05 SCRN1,FC=0.48,p=1.47e-05 HCG2P7,FC=-0.11,p=0.620899477 FKBP14,FC=0.27,p=0.023521875 FKBP14,FC=0.13,p=0.3847207 PLEKHA8,FC=-0.80,p=2.44e-06 PLEKHA8,FC=0.90,p=0.000188495 PLEKHA8,FC=0.69,p=1.32e-13 C7orf41,FC=-0.34,p=0.024964056 C7orf41,FC=-1.85,p=3.33e-21 ZNRF2,FC=-0.19,p=0.1547655 DKFZP586I1420,FC=-0.46,p=1.56e-06 NOD1,FC=-1.26,p=2.3e-09 NOD1,FC=-0.23,p=0.009529227 NOD1,FC=-0.15,p=0.102971709 GGCT,FC=1.37,p=2.14e-31 GARS,FC=0.73,p=3.63e-14 CRHR2,FC=0.55,p=0.006610162 CRHR2,FC=-0.27,p=0.259711567 INMT,FC=-4.78,p=1.96e-39 FAM188B,FC=-0.55,p=1.37e-09 FAM188B,FC=-0.17,p=0.327701026 AQP1,FC=-2.05,p=7.7e-27 AQP1,FC=-3.30,p=9.34e-39 GHRHR,FC=0.50,p=0.026075341 GHRHR,FC=0.77,p=0.000174757 ADCYAP1R1,FC=0.73,p=0.000479366 NEUROD6,FC=-0.04,p=0.843821319 CCDC129,FC=0.57,p=0.007686217 CCDC129,FC=0.67,p=0.000646275 C7orf16,FC=0.39,p=0.056359438 PDE1C,FC=0.17,p=0.172317033 PDE1C,FC=-0.35,p=0.106187967


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGB8,FC=0.05,p=0.92488223 ITGB8,FC=0.79,p=0.060716222 ITGB8,FC=0.12,p=0.843932834 ITGB8,FC=0.79,p=0.060716222 IL6,FC=-1.09,p=0.015423189 GPNMB,FC=-1.51,p=0.011012576 GPNMB,FC=-1.34,p=0.008993357 DFNA5,FC=0.41,p=0.39992936 OSBPL3,FC=1.03,p=0.000495159 OSBPL3,FC=0.62,p=0.049896648 NFE2L3,FC=1.05,p=0.003971017 NFE2L3,FC=1.09,p=0.014931008 CBX3,FC=0.47,p=0.077694272 CBX3,FC=1.37,p=0.000101227 CBX3,FC=0.47,p=0.077694272 HOXA1,FC=0.24,p=0.56603904 HOXA2,FC=0.34,p=0.227506738 HOXA4,FC=-0.22,p=0.530358263 HOXA5,FC=0.14,p=0.73972125 HOXA9,FC=0.36,p=0.107961874 HOXA13,FC=-0.17,p=0.372786589 HIBADH,FC=0.24,p=0.404554868 TAX1BP1,FC=-0.37,p=0.163537852 TAX1BP1,FC=0.05,p=0.86376052 CHN2,FC=-0.60,p=0.06971038 GARS,FC=0.78,p=0.001323912 INMT,FC=-0.70,p=0.084512809 AQP1,FC=-1.55,p=0.017213211 ADCYAP1R1,FC=-0.25,p=0.518664901

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ITGB8,FC=1.16,p=0.001175797 ITGB8,FC=0.90,p=0.024491746 ITGB8,FC=0.77,p=0.207595039 ITGB8,FC=0.90,p=0.024491746 IL6,FC=-1.66,p=0.001160948 GPNMB,FC=0.24,p=0.683595699 GPNMB,FC=0.02,p=0.968816016 DFNA5,FC=0.55,p=0.070025704 OSBPL3,FC=0.46,p=0.273716609 OSBPL3,FC=-0.01,p=0.986672925 NFE2L3,FC=0.56,p=0.07887842 NFE2L3,FC=0.40,p=0.46146694 CBX3,FC=0.43,p=0.195371162 CBX3,FC=0.96,p=0.007297452 CBX3,FC=0.43,p=0.195371162 HOXA1,FC=0.54,p=0.154563552 HOXA2,FC=0.47,p=0.15412783 HOXA4,FC=0.20,p=0.52967702 HOXA5,FC=-0.48,p=0.204090157 HOXA9,FC=0.32,p=0.315984387 HOXA13,FC=-0.03,p=0.898296007 HIBADH,FC=-0.30,p=0.278615751 TAX1BP1,FC=-0.04,p=0.896348988 TAX1BP1,FC=-0.58,p=0.013903453 CHN2,FC=-0.82,p=0.064081086 GARS,FC=0.84,p=0.016337415 INMT,FC=-0.99,p=0.005281517 AQP1,FC=-2.99,p=3e-07 ADCYAP1R1,FC=0.25,p=0.552702004


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=0.06,p=0.429260249 ITGB8,FC=0.04,p=0.308128483 ABCB5,FC=-0.03,p=0.74288088 SP4,FC=0.07,p=0.03796249 SP4,FC=0.03,p=0.200606802 DNAH11,FC=0.12,p=0.166110983 DNAH11,FC=0.12,p=0.325114409 RAPGEF5,FC=-0.32,p=0.03072339 IL6,FC=-0.76,p=2.21e-35 KLHL7,FC=0.29,p=1.32e-07 NUPL2,FC=0.06,p=0.129406486 GPNMB,FC=-0.38,p=0.025266633 C7orf30,FC=0.06,p=0.407580111 TRA2A,FC=0.05,p=0.393890753 STK31,FC=0.26,p=0.053398829 NPY,FC=0.01,p=0.786346532 MPP6,FC=0.26,p=0.000206097 DFNA5,FC=-0.03,p=0.791846939 OSBPL3,FC=0.41,p=2.75e-05 CYCS,FC=0.07,p=0.433105734 CYCS,FC=-0.34,p=0.003814186 C7orf31,FC=-0.11,p=0.23744215 NFE2L3,FC=0.48,p=0.000184928 CBX3,FC=0.40,p=6.15e-05 SNX10,FC=-0.22,p=0.016193679 HOXA1,FC=0.09,p=0.503157537 HOXA4,FC=-0.40,p=2.67e-09 HOXA5,FC=-0.31,p=8.87e-05 HOXA6,FC=-0.25,p=0.000574184 HOXA7,FC=-0.15,p=0.211883081 HOXA9,FC=0.03,p=0.048201439 HOXA10,FC=0.10,p=0.152234269 HOXA11,FC=-0.15,p=0.088364185 HOXA13,FC=0.25,p=0.001057523 EVX1,FC=0.04,p=0.707229638 HIBADH,FC=0.14,p=7.13e-05 HIBADH,FC=0.22,p=0.006843632 TAX1BP1,FC=0.22,p=0.02441483 CREB5,FC=-0.02,p=0.516739712 CPVL,FC=-0.38,p=0.006103164 CHN2,FC=-0.03,p=0.100567905 SCRN1,FC=0.05,p=0.011952063 FKBP14,FC=0.05,p=0.241887197 ZNRF2,FC=0.22,p=0.002595096 DKFZp586I1420,FC=-0.02,p=0.833407841 GARS,FC=0.20,p=0.033608818 CRHR2,FC=0.02,p=0.217023209 INMT,FC=-0.36,p=7.58e-14 AQP1,FC=-0.35,p=0.015274119 GHRHR,FC=0.06,p=0.01343734 ADCYAP1R1,FC=-0.02,p=0.360061776 NEUROD6,FC=0.09,p=0.035131068 C7orf16,FC=0.03,p=0.193451136 PDE1C,FC=0.01,p=0.735537965

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TWISTNB,FC=0.08,p=0.24037123 ITGB8,FC=0.05,p=0.104040696 ABCB5,FC=-0.03,p=0.75413613 SP4,FC=0.07,p=0.019423075 SP4,FC=0.03,p=0.153271007 DNAH11,FC=0.11,p=0.196118339 DNAH11,FC=0.09,p=0.445698206 RAPGEF5,FC=-0.36,p=0.002408428 IL6,FC=-0.72,p=8.14e-17 KLHL7,FC=0.35,p=4.22e-07 NUPL2,FC=0.06,p=0.02586761 GPNMB,FC=-0.02,p=0.875035051 C7orf30,FC=0.05,p=0.49870677 TRA2A,FC=-0.07,p=0.120611607 STK31,FC=0.17,p=0.122180914 NPY,FC=0.00,p=0.892314079 MPP6,FC=0.38,p=6.65e-07 DFNA5,FC=0.11,p=0.431089587 OSBPL3,FC=0.38,p=1.36e-05 CYCS,FC=0.30,p=0.002441253 CYCS,FC=-0.39,p=0.005373754 C7orf31,FC=-0.13,p=0.159332577 NFE2L3,FC=0.46,p=0.000430099 CBX3,FC=0.43,p=4.15e-08 SNX10,FC=-0.31,p=5.37e-05 HOXA1,FC=0.11,p=0.351078181 HOXA4,FC=-0.31,p=0.00081787 HOXA5,FC=-0.29,p=0.000372473 HOXA6,FC=-0.28,p=5.12e-08 HOXA7,FC=0.01,p=0.941852205 HOXA9,FC=0.03,p=0.074871837 HOXA10,FC=0.27,p=0.000135217 HOXA11,FC=-0.13,p=0.203289456 HOXA13,FC=0.25,p=0.001122065 EVX1,FC=0.05,p=0.579929145 HIBADH,FC=0.10,p=0.003609525 HIBADH,FC=0.09,p=0.182859569 TAX1BP1,FC=0.03,p=0.613866806 CREB5,FC=-0.02,p=0.695279963 CPVL,FC=-0.46,p=0.001337178 CHN2,FC=-0.03,p=0.138821441 SCRN1,FC=0.05,p=0.012264976 FKBP14,FC=0.08,p=0.077901569 ZNRF2,FC=0.20,p=0.00524396 DKFZp586I1420,FC=-0.19,p=0.040909343 GARS,FC=0.29,p=1.53e-05 CRHR2,FC=0.00,p=0.777223736 INMT,FC=-0.38,p=1.19e-14 AQP1,FC=-0.62,p=1.64e-15 GHRHR,FC=0.05,p=0.065018539 ADCYAP1R1,FC=-0.01,p=0.597264311 NEUROD6,FC=0.09,p=0.024913161 C7orf16,FC=0.02,p=0.554804954 PDE1C,FC=-0.00,p=0.948434189


< Top >


    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

< Top >


    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-148a,Mean=0.80 hsa-mir-196b,Mean=0.12

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-148a,Mean=0.56 hsa-mir-196b,Mean=0.08

< Top >


    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

TWISTNB,FC=0.32,p=0.008798769 ITGB8,FC=0.50,p=0.005519514 ITGB8,FC=0.22,p=0.037304673 USP22,FC=0.11,p=0.375220053 SP4,FC=-0.82,p=1.81e-19 RAPGEF5,FC=-1.26,p=1.04e-30 RAPGEF5,FC=-0.14,p=0.071995474 IL6,FC=-1.68,p=9.51e-22 KLHL7,FC=1.68,p=6.49e-20 KLHL7,FC=0.80,p=1.45e-18 NUPL2,FC=0.51,p=9.05e-14 GPNMB,FC=-0.45,p=0.000403433 IGF2BP3,FC=1.31,p=7.98e-10 IGF2BP3,FC=1.73,p=1.08e-10 TRA2A,FC=0.16,p=0.003474474 TRA2A,FC=1.11,p=6.61e-15 TRA2A,FC=0.74,p=1.03e-07 NPY,FC=-0.44,p=0.000144817 MPP6,FC=2.30,p=1.42e-27 DFNA5,FC=-0.02,p=0.790192034 OSBPL3,FC=0.97,p=3.4e-23 OSBPL3,FC=0.23,p=0.004750438 CYCS,FC=0.50,p=0.009194649 CYCS,FC=0.48,p=3.16e-14 NPVF,FC=-0.56,p=0.000923805 NFE2L3,FC=0.83,p=1.12e-15 HNRNPA2B1,FC=0.31,p=8.71e-10 CBX3,FC=1.27,p=4.92e-38 CBX3,FC=0.62,p=1.39e-30 SNX10,FC=-0.54,p=5.57e-05 SKAP2,FC=0.39,p=0.000964261 SKAP2,FC=0.60,p=7.32e-09 SKAP2,FC=-0.17,p=0.09051822 HOXA1,FC=0.37,p=0.081489052 HOXA2,FC=-0.77,p=0.000103665 HOXA3,FC=0.66,p=4.86e-06 HOXA4,FC=-1.60,p=5.93e-45 HOXA5,FC=-1.97,p=2.58e-62 HOXA6,FC=0.10,p=0.317831555 HOXA7,FC=-0.03,p=0.817550068 HOXA9,FC=-0.13,p=0.434552398 HOXA9,FC=-0.26,p=0.00518637 HOXA10,FC=0.43,p=0.050456444 HOXA10,FC=1.42,p=2.56e-09 HOXA11,FC=-1.59,p=2.62e-19 HOXA11,FC=-0.50,p=1.54e-05 EVX1,FC=-0.29,p=0.012614218 TAX1BP1,FC=0.61,p=3.49e-22 TAX1BP1,FC=0.90,p=3.49e-14 TAX1BP1,FC=0.35,p=5.76e-09 CREB5,FC=-1.17,p=9.68e-16 TRIL,FC=-0.51,p=1.13e-05 TRIL,FC=-0.17,p=0.058180026 CPVL,FC=-0.75,p=5.9e-08 CHN2,FC=-0.51,p=9.52e-09 CHN2,FC=-0.35,p=6.52e-07 CHN2,FC=0.52,p=0.002773855 SCRN1,FC=0.49,p=1.16e-06 HCG2P7,FC=-0.06,p=0.701701259 FKBP14,FC=0.93,p=4.63e-21 DKFZP586I1420,FC=-0.26,p=0.001278206 NOD1,FC=-0.69,p=8.42e-19 GGCT,FC=1.38,p=4.48e-46 GARS,FC=0.51,p=1.47e-15 CRHR2,FC=-0.70,p=6.18e-05 CRHR2,FC=-0.64,p=4.88e-15 AQP1,FC=-1.83,p=2.08e-23 AQP1,FC=-0.94,p=2.73e-08 GHRHR,FC=-1.24,p=1.03e-17 GHRHR,FC=-0.19,p=0.208398749 ADCYAP1R1,FC=-0.71,p=1.66e-06 NEUROD6,FC=-1.17,p=3e-17 C7orf16,FC=-0.79,p=2.16e-11 PDE1C,FC=-0.77,p=7.65e-26

< Top >


    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-71F18, 6/50, 0.12 RP11-71F18, 5/50, 0.1 RP11-486P11, 7/50, 0.14 RP11-486P11, 3/50, 0.06 RP11-211J15, 6/50, 0.12 RP11-211J15, 2/50, 0.04 RP11-445O1, 5/50, 0.1 RP11-445O1, 4/50, 0.08 RP11-451F11, 8/50, 0.16 RP11-451F11, 2/50, 0.04 RP11-343P21, 3/50, 0.06 RP11-343P21, 4/50, 0.08 RP11-99O17, 7/50, 0.14 RP11-99O17, 3/50, 0.06 RP5-1066K24, 5/50, 0.1 RP5-1066K24, 2/50, 0.04 RP11-232C20, 6/50, 0.12 RP11-232C20, 0/50, 0 RP4-781A18, 5/50, 0.1 RP4-781A18, 4/50, 0.08 RP4-596O9, 4/50, 0.08 RP4-596O9, 5/50, 0.1 RP11-550A18, 2/50, 0.04 RP11-550A18, 6/50, 0.12 RP11-111I9, 7/50, 0.14 RP11-111I9, 1/50, 0.02 RP5-1143H19, 8/50, 0.16 RP5-1143H19, 2/50, 0.04

< Top >


    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11391799 PMID=14581340 PMID=14581340

< Top >


    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D7S2496, 6/35, 17% D7S493, 2/19, 11% PMID=10987304 D7S516, 1/15, 7% PMID=1314694 D7S370, 5/18, 28% D7S1802, 3/17, 18% PMID=15900585 D7S1802, 1/12, 8%

< Top >


Download all image files.
Save all PNG files.    Save all PDF files.    Save all PS files.