IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RPA3,FC=0.46,p=4.62e-05 RPA3,FC=0.41,p=0.005090254 ICA1,FC=0.76,p=7.42e-07 ICA1,FC=0.67,p=0.000667731 BAGE,FC=0.32,p=0.136603145 VHL,FC=0.56,p=0.009968745 VHL,FC=0.29,p=0.106606777 PHF14,FC=0.58,p=0.03278064 THSD7A,FC=0.01,p=0.945330171 ARL4A,FC=0.11,p=0.365699075 ETV1,FC=-0.55,p=0.033488321 ETV1,FC=-1.31,p=1.02e-09 DGKB,FC=-0.09,p=0.691654551 MEOX2,FC=-0.47,p=5.65e-05 MEOX2,FC=-2.12,p=4.05e-12 MEOX2,FC=-0.06,p=0.799350874 SOSTDC1,FC=-3.04,p=6.23e-24 ANKMY2,FC=-0.02,p=0.823899478 AGR2,FC=1.05,p=0.000854187 AHR,FC=-0.25,p=0.081136881 SNX13,FC=0.05,p=0.767562146 PRPS1L1,FC=0.42,p=0.037861238 HDAC9,FC=0.46,p=0.107099348 TWIST1,FC=1.21,p=0.000129922

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RPA3,FC=0.58,p=1.61e-05 RPA3,FC=0.46,p=0.004661214 ICA1,FC=-0.37,p=0.063669617 ICA1,FC=0.05,p=0.823244996 BAGE,FC=-0.49,p=0.019684308 VHL,FC=0.23,p=0.419339897 VHL,FC=-0.06,p=0.819773771 PHF14,FC=0.84,p=0.030537401 THSD7A,FC=-0.18,p=0.206843155 ARL4A,FC=0.38,p=0.012272192 ETV1,FC=-0.53,p=0.149008007 ETV1,FC=-1.53,p=5.61e-13 DGKB,FC=-0.10,p=0.776996834 MEOX2,FC=-0.41,p=0.001666885 MEOX2,FC=-2.67,p=6.87e-12 MEOX2,FC=-0.04,p=0.904461462 SOSTDC1,FC=-2.43,p=1.81e-07 ANKMY2,FC=-0.22,p=0.085182475 AGR2,FC=-1.05,p=0.001816049 AHR,FC=-0.54,p=0.000260309 SNX13,FC=-0.50,p=0.024764035 PRPS1L1,FC=0.35,p=0.254943208 HDAC9,FC=0.40,p=0.329982493 TWIST1,FC=2.11,p=6.43e-07


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C1GALT1,FC=0.69,p=2.74e-13 MIOS,FC=-0.02,p=0.851405638 MIOS,FC=0.14,p=0.002107609 MIOS,FC=0.28,p=6.81e-08 RPA3,FC=0.98,p=9.77e-27 ICA1,FC=1.13,p=3.66e-14 ICA1,FC=0.54,p=5.17e-11 ICA1,FC=0.90,p=1.78e-19 ICA1,FC=0.70,p=4.57e-16 ICA1,FC=0.32,p=0.001022561 VHL,FC=-0.01,p=0.945144146 NDUFA4,FC=0.15,p=0.004229008 PHF14,FC=0.32,p=0.057080044 PHF14,FC=-0.22,p=0.066277402 THSD7A,FC=-0.70,p=2.3e-09 TMEM106B,FC=1.26,p=5.21e-39 SCIN,FC=0.68,p=2.51e-08 ARL4A,FC=-0.06,p=0.492553013 ETV1,FC=-1.64,p=1.47e-26 ETV1,FC=0.20,p=0.024545918 ETV1,FC=-0.23,p=8.97e-05 ETV1,FC=-0.08,p=0.201790923 ETV1,FC=-0.48,p=5.49e-14 DGKB,FC=0.10,p=0.546847924 MEOX2,FC=-1.63,p=6.32e-19 SOSTDC1,FC=-4.65,p=7.08e-84 ANKMY2,FC=0.12,p=0.089626545 BZW2,FC=1.15,p=3.04e-44 TSPAN13,FC=-0.49,p=5.49e-09 AGR2,FC=1.74,p=1.52e-19 AHR,FC=-0.64,p=1.08e-07 SNX13,FC=0.32,p=6.61e-08 SNX13,FC=-0.29,p=5.64e-08 SNX13,FC=0.51,p=1.64e-07 PRPS1L1,FC=-0.34,p=0.000524156 HDAC9,FC=-0.07,p=0.446307172 TWIST1,FC=1.31,p=3.92e-18

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C1GALT1,FC=-0.52,p=0.000206476 MIOS,FC=4.05,p=1.14e-95 MIOS,FC=-5.44,p=2.22e-140 MIOS,FC=-2.68,p=3.96e-67 RPA3,FC=1.53,p=7.27e-39 ICA1,FC=4.35,p=2.39e-90 ICA1,FC=3.92,p=1.56e-117 ICA1,FC=-1.65,p=4.13e-34 ICA1,FC=-1.25,p=3.22e-36 ICA1,FC=1.97,p=1.72e-43 VHL,FC=3.76,p=4.02e-62 NDUFA4,FC=-7.12,p=2.47e-113 PHF14,FC=3.50,p=3.95e-64 PHF14,FC=3.36,p=1.84e-96 THSD7A,FC=0.37,p=5.16e-06 TMEM106B,FC=2.10,p=9.05e-73 SCIN,FC=5.19,p=2.19e-110 ARL4A,FC=1.14,p=3.4e-44 ETV1,FC=-5.94,p=4.44e-131 ETV1,FC=7.45,p=5.7e-174 ETV1,FC=-2.37,p=3.28e-38 ETV1,FC=-1.48,p=1.67e-25 ETV1,FC=-0.23,p=0.000511105 DGKB,FC=4.48,p=5.03e-86 MEOX2,FC=1.67,p=2.96e-44 SOSTDC1,FC=-1.92,p=2.2e-29 ANKMY2,FC=-0.89,p=4.23e-22 BZW2,FC=-1.08,p=3.08e-43 TSPAN13,FC=-6.06,p=4.42e-150 AGR2,FC=-1.25,p=1.26e-40 AHR,FC=-5.29,p=7.26e-113 SNX13,FC=-0.41,p=8.18e-15 SNX13,FC=-1.91,p=1.27e-52 SNX13,FC=1.71,p=2.37e-51 PRPS1L1,FC=1.43,p=2.32e-24 HDAC9,FC=1.63,p=1.41e-34 TWIST1,FC=0.03,p=0.895535833


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C1GALT1,FC=0.78,p=2.76e-13 COL28A1,FC=0.75,p=0.000252865 MIOS,FC=-0.16,p=0.380659074 MIOS,FC=0.13,p=0.011692058 MIOS,FC=0.04,p=0.483333352 RPA3,FC=0.56,p=5.71e-07 GLCCI1,FC=-0.26,p=0.241362662 GLCCI1,FC=-0.28,p=0.046666744 GLCCI1,FC=-0.57,p=8.36e-06 GLCCI1,FC=-0.51,p=0.00034039 ICA1,FC=0.89,p=2.85e-14 ICA1,FC=0.59,p=7.23e-08 ICA1,FC=0.51,p=0.000304461 ICA1,FC=0.45,p=0.003051747 ICA1,FC=0.62,p=8.71e-05 ICA1,FC=0.25,p=0.10021234 NXPH1,FC=0.93,p=8.36e-05 PER4,FC=0.65,p=0.000176806 BAGE,FC=0.65,p=0.00052825 VHL,FC=0.11,p=0.54840629 NDUFA4,FC=-0.07,p=0.284123014 PHF14,FC=0.42,p=4.57e-07 PHF14,FC=0.37,p=0.108997746 PHF14,FC=-0.20,p=0.17298614 THSD7A,FC=-0.69,p=3.92e-06 THSD7A,FC=-0.03,p=0.899442282 TMEM106B,FC=0.22,p=0.012657924 TMEM106B,FC=0.61,p=9.31e-10 TMEM106B,FC=1.30,p=2.36e-35 VWDE,FC=0.59,p=0.017491663 VWDE,FC=0.96,p=0.00089386 SCIN,FC=0.76,p=8.84e-07 SCIN,FC=0.90,p=0.000201136 SCIN,FC=0.40,p=0.181308483 ARL4A,FC=0.03,p=0.760932465 LOC729993,FC=0.61,p=0.003806287 ETV1,FC=-0.19,p=0.161537172 ETV1,FC=-1.88,p=6.59e-22 ETV1,FC=-1.05,p=2.59e-09 ETV1,FC=-0.36,p=0.011375813 ETV1,FC=-0.33,p=0.0176842 DGKB,FC=0.75,p=0.000431131 DGKB,FC=0.18,p=0.446523157 MEOX2,FC=-1.54,p=4.34e-11 SOSTDC1,FC=-4.80,p=1.89e-38 ANKMY2,FC=-0.03,p=0.709848545 ANKMY2,FC=0.29,p=0.105579876 BZW2,FC=0.85,p=1.27e-23 TSPAN13,FC=-0.17,p=0.092867222 AGR2,FC=0.83,p=0.000206113 AGR2,FC=1.31,p=2.37e-08 AGR3,FC=-2.06,p=8.48e-13 AHR,FC=1.58,p=1.21e-11 SNX13,FC=0.25,p=0.039651619 SNX13,FC=-0.25,p=0.00167809 SNX13,FC=0.38,p=4.73e-09 SNX13,FC=0.79,p=1.02e-06 SNX13,FC=0.45,p=0.000376722 C22orf39,FC=-0.52,p=6.8e-09 PRPS1L1,FC=-0.20,p=0.258453325 HDAC9,FC=0.32,p=0.104221064 HDAC9,FC=0.22,p=0.105272066 HDAC9,FC=0.22,p=0.250352097 HDAC9,FC=0.79,p=4.11e-05 HDAC9,FC=-0.08,p=0.736131215 TWIST1,FC=0.99,p=1.7e-07 FERD3L,FC=0.28,p=0.042353665

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C1GALT1,FC=0.12,p=0.298980368 COL28A1,FC=0.90,p=4.08e-05 MIOS,FC=-0.82,p=2.69e-05 MIOS,FC=0.04,p=0.534196019 MIOS,FC=-0.08,p=0.255332133 RPA3,FC=0.43,p=0.000108568 GLCCI1,FC=-1.42,p=1.14e-09 GLCCI1,FC=-1.21,p=2.89e-11 GLCCI1,FC=-1.37,p=2.5e-19 GLCCI1,FC=-1.67,p=9.65e-19 ICA1,FC=-0.87,p=9.08e-08 ICA1,FC=-0.97,p=1.14e-08 ICA1,FC=-0.25,p=0.211922712 ICA1,FC=-0.02,p=0.879403307 ICA1,FC=-0.40,p=0.026422367 ICA1,FC=-0.18,p=0.31662841 NXPH1,FC=0.83,p=0.00211393 PER4,FC=0.95,p=1.47e-06 BAGE,FC=0.64,p=0.005194756 VHL,FC=0.26,p=0.177822317 NDUFA4,FC=-0.41,p=6.15e-09 PHF14,FC=0.03,p=0.748730919 PHF14,FC=0.08,p=0.773661515 PHF14,FC=-0.02,p=0.895622288 THSD7A,FC=-1.06,p=7.13e-13 THSD7A,FC=-0.35,p=0.133066055 TMEM106B,FC=-0.41,p=1.05e-05 TMEM106B,FC=0.16,p=0.134896311 TMEM106B,FC=0.80,p=8.29e-13 VWDE,FC=0.40,p=0.169633039 VWDE,FC=0.38,p=0.271570689 SCIN,FC=0.61,p=0.000138303 SCIN,FC=-0.05,p=0.821379025 SCIN,FC=-0.78,p=0.012817807 ARL4A,FC=-0.16,p=0.162030585 LOC729993,FC=1.32,p=8.95e-08 ETV1,FC=-0.08,p=0.589546302 ETV1,FC=-2.51,p=3.32e-25 ETV1,FC=-0.74,p=5.68e-07 ETV1,FC=-0.54,p=0.000352293 ETV1,FC=-0.57,p=9.39e-05 DGKB,FC=1.13,p=2.51e-06 DGKB,FC=0.91,p=0.000794233 MEOX2,FC=-2.84,p=8.29e-16 SOSTDC1,FC=-1.93,p=3.1e-07 ANKMY2,FC=-0.44,p=7.64e-07 ANKMY2,FC=0.32,p=0.101498563 BZW2,FC=0.75,p=3.65e-13 TSPAN13,FC=-1.24,p=4.07e-21 AGR2,FC=-1.56,p=2.33e-11 AGR2,FC=-1.06,p=5.04e-06 AGR3,FC=-4.67,p=9.8e-33 AHR,FC=1.43,p=2e-11 SNX13,FC=-0.03,p=0.786780085 SNX13,FC=-0.80,p=2.51e-20 SNX13,FC=0.26,p=0.000444337 SNX13,FC=0.54,p=0.002553485 SNX13,FC=0.91,p=5.33e-11 C22orf39,FC=-0.25,p=0.001642996 PRPS1L1,FC=-0.34,p=0.089008194 HDAC9,FC=-0.25,p=0.302025477 HDAC9,FC=-0.05,p=0.763286674 HDAC9,FC=0.68,p=0.000445114 HDAC9,FC=0.39,p=0.078146098 HDAC9,FC=-0.67,p=0.004243949 TWIST1,FC=2.22,p=2.85e-21 FERD3L,FC=0.75,p=9.57e-07


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RPA3,FC=0.78,p=0.004089638 ICA1,FC=0.79,p=0.090853681 VHL,FC=0.44,p=0.156398108 VHL,FC=-0.03,p=0.872903345 NDUFA4,FC=-0.09,p=0.730491467 MEOX2,FC=-0.66,p=0.142434405 AGR2,FC=-0.24,p=0.676666951 AHR,FC=0.37,p=0.128974157

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RPA3,FC=0.94,p=0.008250645 ICA1,FC=-1.26,p=0.004599999 VHL,FC=0.50,p=0.10060454 VHL,FC=0.18,p=0.39200672 NDUFA4,FC=-0.18,p=0.665985751 MEOX2,FC=-0.65,p=0.077929897 AGR2,FC=-2.42,p=0.000221821 AHR,FC=0.53,p=0.062616551


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      C1GALT1,FC=0.26,p=0.00105694 RPA3,FC=0.39,p=9.38e-07 ICA1,FC=0.12,p=0.04049408 NXPH1,FC=-0.08,p=0.293337976 NDUFA4,FC=0.32,p=9.17e-06 PHF14,FC=0.07,p=0.301247384 SCIN,FC=-0.07,p=0.50441 ARL4A,FC=0.13,p=0.133522751 ETV1,FC=-0.12,p=0.328139806 DGKB,FC=-0.06,p=0.309808811 MEOX2,FC=0.13,p=0.077294813 SOSTDC1,FC=-0.12,p=0.018456733 ANKMY2,FC=0.01,p=0.842685244 BZW2,FC=0.25,p=0.00071632 AGR2,FC=0.47,p=0.001483638 AHR,FC=0.07,p=0.543747089 SNX13,FC=0.29,p=0.00026164 PRPS1L1,FC=0.04,p=0.052681023 HDAC9,FC=-0.05,p=0.42744201 TWIST1,FC=0.02,p=0.458052454 FERD3L,FC=-0.01,p=0.774487089

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      C1GALT1,FC=0.16,p=0.003863652 RPA3,FC=0.41,p=4.37e-09 ICA1,FC=-0.14,p=0.020614082 NXPH1,FC=-0.08,p=0.302180334 NDUFA4,FC=0.27,p=0.000446953 PHF14,FC=0.11,p=0.102341598 SCIN,FC=-0.10,p=0.183442758 ARL4A,FC=0.14,p=0.062169338 ETV1,FC=-0.31,p=0.001660449 DGKB,FC=-0.03,p=0.734315384 MEOX2,FC=0.12,p=0.036145697 SOSTDC1,FC=-0.05,p=0.373023256 ANKMY2,FC=-0.02,p=0.408986636 BZW2,FC=0.29,p=1.7e-05 AGR2,FC=0.12,p=0.43511961 AHR,FC=-0.04,p=0.647590595 SNX13,FC=0.25,p=0.000825493 PRPS1L1,FC=0.04,p=0.282770858 HDAC9,FC=-0.04,p=0.709092476 TWIST1,FC=0.04,p=0.307116307 FERD3L,FC=0.02,p=0.607494355


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

C1GALT1,FC=0.91,p=7.18e-17 MIOS,FC=0.33,p=0.015803971 MIOS,FC=0.07,p=0.106288941 MIOS,FC=0.17,p=0.000843888 RPA3,FC=0.79,p=2.7e-14 ICA1,FC=0.89,p=1.31e-06 ICA1,FC=0.30,p=0.001132902 ICA1,FC=0.90,p=4.11e-17 ICA1,FC=0.58,p=1.67e-11 ICA1,FC=0.24,p=0.046908662 VHL,FC=-0.02,p=0.909590692 NDUFA4,FC=0.10,p=0.020317706 PHF14,FC=0.08,p=0.695188376 PHF14,FC=0.07,p=0.478023176 THSD7A,FC=-0.72,p=3.09e-10 TMEM106B,FC=1.75,p=2.48e-50 SCIN,FC=0.80,p=1.53e-10 ARL4A,FC=0.14,p=0.154898231 ETV1,FC=-1.32,p=2.76e-17 ETV1,FC=0.29,p=0.002404203 ETV1,FC=-0.30,p=7.58e-06 ETV1,FC=-0.15,p=0.041611058 ETV1,FC=-0.65,p=9.6e-14 DGKB,FC=-0.30,p=0.152191448 MEOX2,FC=-1.08,p=1.14e-06 SOSTDC1,FC=-4.26,p=4.21e-41 ANKMY2,FC=0.07,p=0.287719386 BZW2,FC=1.00,p=7.53e-30 TSPAN13,FC=-0.31,p=0.00010202 AGR2,FC=1.83,p=8.58e-27 AHR,FC=0.26,p=0.014701991 SNX13,FC=0.35,p=1.39e-10 SNX13,FC=-0.61,p=1.02e-13 SNX13,FC=1.10,p=1.39e-29 PRPS1L1,FC=-0.90,p=4.36e-10 HDAC9,FC=0.08,p=0.443915059 TWIST1,FC=1.32,p=4.41e-14

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP4-733B9, 5/50, 0.1 RP4-733B9, 5/50, 0.1 RP11-505D17, 4/50, 0.08 RP11-505D17, 3/50, 0.06 RP11-304A10, 6/50, 0.12 RP11-304A10, 3/50, 0.06 RP11-352E12, 1/50, 0.02 RP11-352E12, 8/50, 0.16 RP11-392P1, 8/50, 0.16 RP11-392P1, 2/50, 0.04 RP11-502P9, 10/50, 0.2 RP11-502P9, 6/50, 0.12 RP5-1100A7, 7/50, 0.14 RP5-1100A7, 3/50, 0.06 RP11-195L14, 11/50, 0.22 RP11-195L14, 2/50, 0.04 RP4-685A2, 7/50, 0.14 RP4-685A2, 2/50, 0.04 RP11-512E16, 5/50, 0.1 RP11-512E16, 6/50, 0.12 RP11-547G15, 4/50, 0.08 RP11-547G15, 7/50, 0.14 RP11-196O16, 3/50, 0.06 RP11-196O16, 4/50, 0.08 RP11-403N12, 15/50, 0.3 RP11-403N12, 1/50, 0.02 RP11-323K15, 7/50, 0.14 RP11-323K15, 0/50, 0 RP11-71F18, 6/50, 0.12 RP11-71F18, 5/50, 0.1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D7S513, 2/21, 10% PMID=10987304 D7S507, 1/20, 5% D7S3047, 8/22, 36% PMID=15900585 D7S3047, 9/23, 39%

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