IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , SMO, 0.47%, 1/215

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ARF5,FC=0.29,p=2.05e-05 PAX4,FC=0.67,p=7.83e-07 PAX4,FC=0.25,p=0.250564773 SND1,FC=0.33,p=8.96e-06 LEP,FC=0.06,p=0.786905104 IMPDH1,FC=0.12,p=0.150287774 CALU,FC=0.54,p=1.86e-06 OPN1SW,FC=0.26,p=0.001241243 FLNC,FC=-0.33,p=0.08880272 ATP6V1F,FC=-0.02,p=0.741249912 IRF5,FC=0.27,p=0.020195744 IRF5,FC=0.18,p=0.084158726 IRF5,FC=-0.14,p=0.315607068 TNPO3,FC=0.54,p=1.43e-06 TNPO3,FC=0.46,p=5.1e-06 SMO,FC=0.31,p=0.000384047 AHCYL2,FC=-0.29,p=0.171562391 NRF1,FC=-0.27,p=0.103482639 UBE2H,FC=0.95,p=3.23e-06 KLHDC10,FC=-0.22,p=0.061831153 CPA2,FC=0.20,p=0.282357452 CPA1,FC=0.18,p=0.345948969 MEST,FC=0.36,p=0.013702122 MKLN1,FC=0.21,p=0.235241979 PODXL,FC=-1.42,p=4.27e-28

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ARF5,FC=0.77,p=3.52e-12 PAX4,FC=0.86,p=2.08e-05 PAX4,FC=0.53,p=0.069356952 SND1,FC=0.24,p=0.014399566 LEP,FC=-0.60,p=0.039480164 IMPDH1,FC=0.36,p=0.000234153 CALU,FC=0.57,p=1.94e-05 OPN1SW,FC=0.39,p=0.001481088 FLNC,FC=-0.91,p=0.000173752 ATP6V1F,FC=0.15,p=0.087709325 IRF5,FC=0.43,p=0.008268013 IRF5,FC=0.44,p=0.004358882 IRF5,FC=0.18,p=0.393445621 TNPO3,FC=0.92,p=3.01e-07 TNPO3,FC=0.96,p=3.35e-09 SMO,FC=0.44,p=0.000217104 AHCYL2,FC=-1.37,p=6.14e-14 NRF1,FC=0.13,p=0.579456176 UBE2H,FC=1.28,p=3.76e-06 KLHDC10,FC=-0.64,p=6.73e-06 CPA2,FC=0.22,p=0.430189716 CPA1,FC=-0.55,p=0.099031714 MEST,FC=0.64,p=0.001615681 MKLN1,FC=0.33,p=0.181630441 PODXL,FC=-1.75,p=1.5e-19


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GCC1,FC=-0.05,p=0.176143189 ARF5,FC=0.16,p=0.010266359 FSCN3,FC=-0.09,p=0.134087079 PAX4,FC=0.61,p=1.29e-07 PAX4,FC=-0.24,p=0.051487075 SND1,FC=0.59,p=2.95e-24 LEP,FC=0.15,p=0.174276675 RBM28,FC=0.69,p=1.55e-23 IMPDH1,FC=-0.18,p=0.002021281 C7orf68,FC=0.56,p=3.78e-07 CALU,FC=1.24,p=2.22e-32 CALU,FC=1.54,p=7.78e-45 CALU,FC=0.74,p=4.8e-27 CALU,FC=1.19,p=2.86e-41 OPN1SW,FC=-0.36,p=2.33e-05 FLNC,FC=-0.66,p=4.63e-09 ATP6V1F,FC=0.07,p=0.192508943 IRF5,FC=-0.01,p=0.860748222 IRF5,FC=0.05,p=0.652797577 TNPO3,FC=-0.03,p=0.458632901 TNPO3,FC=0.40,p=6.28e-07 TNPO3,FC=0.14,p=0.023838307 SMO,FC=0.96,p=3.8e-16 AHCYL2,FC=-0.57,p=1.63e-06 AHCYL2,FC=0.19,p=0.101614795 NRF1,FC=0.06,p=0.588092353 NRF1,FC=0.07,p=0.432853961 NRF1,FC=0.30,p=0.00012785 NRF1,FC=-0.36,p=7.13e-16 UBE2H,FC=1.57,p=2.09e-68 UBE2H,FC=0.75,p=4.89e-21 KLHDC10,FC=-0.19,p=0.004976904 KLHDC10,FC=-0.23,p=0.006709767 TMEM209,FC=0.27,p=0.072410807 CPA2,FC=-0.14,p=0.007657288 CPA4,FC=-0.23,p=1.11e-05 CPA1,FC=-0.01,p=0.950226566 TSGA14,FC=-0.18,p=0.100234503 MEST,FC=0.56,p=2.65e-11 MKLN1,FC=0.63,p=6.96e-15 PODXL,FC=-1.17,p=9.93e-62 CHCHD3,FC=0.27,p=2.1e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GCC1,FC=-0.70,p=8.03e-29 ARF5,FC=1.24,p=3.05e-29 FSCN3,FC=-4.85,p=7.23e-136 PAX4,FC=2.44,p=4.08e-38 PAX4,FC=0.26,p=0.074407846 SND1,FC=-1.84,p=1.95e-46 LEP,FC=1.77,p=4.7e-19 RBM28,FC=1.76,p=2.42e-76 IMPDH1,FC=-1.61,p=4.51e-57 C7orf68,FC=0.98,p=7.52e-24 CALU,FC=1.30,p=9.03e-29 CALU,FC=-2.49,p=1.86e-43 CALU,FC=-1.34,p=5.5e-54 CALU,FC=1.56,p=6.49e-49 OPN1SW,FC=4.90,p=1.22e-130 FLNC,FC=-4.12,p=7.92e-62 ATP6V1F,FC=-0.69,p=3.85e-12 IRF5,FC=-0.56,p=5.58e-08 IRF5,FC=2.79,p=6.04e-39 TNPO3,FC=0.14,p=0.010404032 TNPO3,FC=-2.86,p=3.1e-87 TNPO3,FC=-1.49,p=2.2e-51 SMO,FC=3.57,p=3.97e-90 AHCYL2,FC=3.59,p=6.63e-137 AHCYL2,FC=-0.45,p=2.47e-07 NRF1,FC=-0.21,p=0.189426854 NRF1,FC=1.68,p=4.39e-45 NRF1,FC=2.06,p=2.03e-40 NRF1,FC=-3.27,p=1.44e-74 UBE2H,FC=2.80,p=2.25e-91 UBE2H,FC=-5.80,p=2.73e-138 KLHDC10,FC=1.83,p=9.91e-70 KLHDC10,FC=1.73,p=6.6e-43 TMEM209,FC=6.30,p=7.47e-118 CPA2,FC=-1.08,p=9.32e-12 CPA4,FC=3.67,p=1.25e-150 CPA1,FC=4.03,p=1.78e-89 TSGA14,FC=3.07,p=4.92e-76 MEST,FC=0.58,p=3.12e-14 MKLN1,FC=1.64,p=3.95e-42 PODXL,FC=0.33,p=0.000775768 CHCHD3,FC=-1.50,p=8.36e-55


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GCC1,FC=0.08,p=0.14078799 GCC1,FC=0.64,p=0.005636795 ARF5,FC=0.85,p=3.22e-17 FSCN3,FC=0.44,p=0.013822136 PAX4,FC=0.51,p=0.015803579 PAX4,FC=0.73,p=8.36e-05 SND1,FC=0.57,p=1.05e-14 SND1,FC=0.27,p=0.030258018 LRRC4,FC=-2.02,p=4.11e-22 LEP,FC=0.04,p=0.890846837 RBM28,FC=0.71,p=8.33e-21 IMPDH1,FC=0.61,p=1.67e-09 C7orf68,FC=0.89,p=2.11e-08 C7orf68,FC=0.67,p=0.000177856 FAM71F2,FC=0.56,p=0.005242015 FAM71F1,FC=0.14,p=0.474551005 CALU,FC=1.27,p=7.05e-15 CALU,FC=0.19,p=0.128149541 CALU,FC=1.29,p=1.6e-18 CALU,FC=0.92,p=9.32e-26 CALU,FC=0.86,p=3.05e-16 OPN1SW,FC=0.43,p=0.009605697 CCDC136,FC=0.37,p=0.019019621 CCDC136,FC=-0.34,p=0.110653719 CCDC136,FC=0.09,p=0.56881583 FLNC,FC=-0.33,p=0.01298881 ATP6V1F,FC=0.31,p=2.3e-05 IRF5,FC=-0.23,p=0.061298442 IRF5,FC=0.19,p=0.247415756 IRF5,FC=-0.31,p=0.037312287 TNPO3,FC=0.27,p=0.000147891 TNPO3,FC=0.12,p=0.147285989 TNPO3,FC=0.40,p=5.82e-07 TSPAN33,FC=0.13,p=0.212064245 SMO,FC=0.43,p=0.001796615 AHCYL2,FC=0.33,p=0.027386523 AHCYL2,FC=-0.36,p=0.01459466 FAM40B,FC=0.75,p=0.000318246 FAM40B,FC=1.34,p=2.86e-12 NRF1,FC=-0.45,p=0.000105774 NRF1,FC=0.08,p=0.597283305 NRF1,FC=-0.14,p=0.013240116 NRF1,FC=-0.00,p=0.985863792 UBE2H,FC=-0.19,p=0.128277533 UBE2H,FC=0.76,p=2.3e-17 UBE2H,FC=0.42,p=0.010919246 UBE2H,FC=1.12,p=8.54e-30 UBE2H,FC=-0.30,p=0.02911831 UBE2H,FC=0.24,p=0.350607577 UBE2H,FC=0.86,p=1.51e-12 ZC3HC1,FC=0.45,p=2.04e-12 ZC3HC1,FC=0.04,p=0.858138432 KLHDC10,FC=-0.16,p=0.160196706 KLHDC10,FC=-0.66,p=0.000452465 KLHDC10,FC=0.09,p=0.391759321 KLHDC10,FC=0.20,p=0.147523113 TMEM209,FC=0.75,p=2e-07 TMEM209,FC=0.26,p=0.004250828 C7orf45,FC=-0.21,p=0.207816065 C7orf45,FC=0.55,p=0.007091684 CPA2,FC=0.11,p=0.447323951 CPA4,FC=0.43,p=0.007461481 CPA5,FC=0.41,p=0.018587831 CPA1,FC=-0.16,p=0.381295087 TSGA14,FC=0.72,p=0.000759668 TSGA14,FC=0.84,p=1.18e-12 TSGA14,FC=0.62,p=0.000430422 TSGA14,FC=0.86,p=2.31e-16 MEST,FC=0.92,p=6.12e-18 COPG2,FC=0.47,p=0.000119672 TSGA13,FC=-0.24,p=0.164694239 KLF14,FC=0.73,p=2.28e-05 KLF14,FC=0.33,p=0.064636086 MKLN1,FC=0.35,p=0.00057713 MKLN1,FC=-0.78,p=1.38e-06 MKLN1,FC=0.32,p=0.002105132 MKLN1,FC=0.13,p=0.621799061 MKLN1,FC=-0.07,p=0.260099381 MKLN1,FC=0.73,p=9.95e-05 MKLN1,FC=-0.30,p=0.005369907 PODXL,FC=-1.62,p=3.48e-47 PLXNA4,FC=0.20,p=0.325948243 PLXNA4,FC=-0.11,p=0.524822908 PLXNA4,FC=0.06,p=0.696856682 PLXNA4,FC=0.10,p=0.534257747 PLXNA4,FC=-0.03,p=0.865693465 CHCHD3,FC=-0.12,p=0.466323078 CHCHD3,FC=0.28,p=5.2e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GCC1,FC=0.19,p=0.004227857 GCC1,FC=1.00,p=0.000255705 ARF5,FC=1.52,p=3.93e-23 FSCN3,FC=1.16,p=4.83e-08 PAX4,FC=0.78,p=0.000979217 PAX4,FC=0.94,p=6.05e-05 SND1,FC=0.60,p=1.17e-10 SND1,FC=0.30,p=0.005297883 LRRC4,FC=-0.35,p=0.213756891 LEP,FC=-0.20,p=0.488188752 RBM28,FC=0.96,p=9.64e-26 IMPDH1,FC=0.96,p=6.41e-17 C7orf68,FC=1.86,p=4.96e-20 C7orf68,FC=1.54,p=2.27e-12 FAM71F2,FC=1.19,p=1.48e-07 FAM71F1,FC=1.19,p=4.89e-09 CALU,FC=1.22,p=6.05e-16 CALU,FC=-0.14,p=0.26163266 CALU,FC=1.22,p=1.74e-16 CALU,FC=1.01,p=3.83e-20 CALU,FC=0.74,p=3.2e-11 OPN1SW,FC=0.89,p=2.88e-06 CCDC136,FC=1.30,p=6.26e-15 CCDC136,FC=0.14,p=0.530636297 CCDC136,FC=0.79,p=7.88e-07 FLNC,FC=-0.28,p=0.018293407 ATP6V1F,FC=0.49,p=7.35e-09 IRF5,FC=0.12,p=0.37247209 IRF5,FC=0.48,p=0.012526369 IRF5,FC=-0.07,p=0.676345863 TNPO3,FC=0.67,p=7.8e-16 TNPO3,FC=0.36,p=3.06e-05 TNPO3,FC=0.67,p=7.59e-11 TSPAN33,FC=0.41,p=0.002969162 SMO,FC=1.52,p=1.42e-20 AHCYL2,FC=-0.31,p=0.004464253 AHCYL2,FC=-1.34,p=1.54e-22 FAM40B,FC=-0.35,p=0.137469311 FAM40B,FC=0.83,p=4.53e-06 NRF1,FC=-0.44,p=0.000533019 NRF1,FC=-0.13,p=0.433503637 NRF1,FC=-0.07,p=0.261272583 NRF1,FC=0.10,p=0.149704268 UBE2H,FC=-0.54,p=1.02e-05 UBE2H,FC=0.60,p=1.16e-10 UBE2H,FC=0.32,p=0.068944751 UBE2H,FC=1.42,p=2.83e-29 UBE2H,FC=-0.78,p=3.01e-07 UBE2H,FC=-0.39,p=0.124304983 UBE2H,FC=1.11,p=1.76e-19 ZC3HC1,FC=0.65,p=1.31e-16 ZC3HC1,FC=-0.16,p=0.445613927 KLHDC10,FC=-0.68,p=9.1e-08 KLHDC10,FC=-0.46,p=0.027403589 KLHDC10,FC=0.06,p=0.62374649 KLHDC10,FC=-0.03,p=0.785077626 TMEM209,FC=0.66,p=0.001233583 TMEM209,FC=0.13,p=0.176000628 C7orf45,FC=0.23,p=0.234848652 C7orf45,FC=0.91,p=0.000271804 CPA2,FC=1.06,p=1.23e-16 CPA4,FC=1.32,p=7.86e-12 CPA5,FC=0.45,p=0.020967075 CPA1,FC=-0.47,p=0.014933818 TSGA14,FC=1.36,p=1.09e-06 TSGA14,FC=0.53,p=0.000124779 TSGA14,FC=0.90,p=2.2e-06 TSGA14,FC=0.96,p=7.36e-15 MEST,FC=1.27,p=2.23e-16 COPG2,FC=0.70,p=9.98e-09 TSGA13,FC=-0.42,p=0.024232575 KLF14,FC=0.59,p=0.001419209 KLF14,FC=0.58,p=0.003370163 MKLN1,FC=0.37,p=0.000408097 MKLN1,FC=-0.92,p=1.69e-12 MKLN1,FC=-0.05,p=0.690939506 MKLN1,FC=-0.92,p=0.000864736 MKLN1,FC=-0.30,p=3.71e-05 MKLN1,FC=0.56,p=0.010431295 MKLN1,FC=-0.69,p=9.84e-15 PODXL,FC=-2.20,p=6.43e-45 PLXNA4,FC=-0.18,p=0.419115584 PLXNA4,FC=-0.12,p=0.512405226 PLXNA4,FC=-0.23,p=0.190157972 PLXNA4,FC=0.17,p=0.336769439 PLXNA4,FC=0.27,p=0.086674741 CHCHD3,FC=-0.29,p=0.031173346 CHCHD3,FC=0.53,p=1.34e-15


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ARF5,FC=0.69,p=0.020657228 FSCN3,FC=1.65,p=3.53e-05 IMPDH1,FC=0.44,p=0.048519881 CALU,FC=1.15,p=0.001383134 IRF5,FC=-0.62,p=0.168755051 UBE2H,FC=0.38,p=0.08243818 UBE2H,FC=-0.55,p=0.055437402 CPA2,FC=0.39,p=0.224354346 CPA4,FC=0.74,p=0.039635728 CPA1,FC=0.57,p=0.190548697 MEST,FC=-0.01,p=0.982346133 MKLN1,FC=0.72,p=0.039994908 PODXL,FC=-0.97,p=0.002719992

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ARF5,FC=0.77,p=0.017536831 FSCN3,FC=1.90,p=0.017588706 IMPDH1,FC=0.24,p=0.45632711 CALU,FC=0.92,p=0.00288722 IRF5,FC=-0.75,p=0.152148303 UBE2H,FC=0.40,p=0.157565289 UBE2H,FC=-0.15,p=0.763508587 CPA2,FC=0.58,p=0.265270482 CPA4,FC=0.88,p=0.042881057 CPA1,FC=0.48,p=0.425544758 MEST,FC=0.22,p=0.627742544 MKLN1,FC=1.06,p=0.00243789 PODXL,FC=-1.88,p=7.74e-06


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      GCC1,FC=-0.13,p=3.86e-05 ARF5,FC=0.00,p=0.991220142 FSCN3,FC=-0.16,p=0.001482229 SND1,FC=0.08,p=0.045874211 SND1,FC=-0.06,p=0.183459564 LRRC4,FC=-0.22,p=0.082459434 LEP,FC=0.02,p=0.310795193 RBM28,FC=0.15,p=0.000744041 IMPDH1,FC=-0.04,p=0.231544257 CALU,FC=0.03,p=0.332308965 OPN1SW,FC=0.05,p=0.022705114 FLNC,FC=-0.34,p=0.035084988 ATP6V1F,FC=-0.00,p=0.932129964 IRF5,FC=-0.11,p=0.003440772 TNPO3,FC=-0.23,p=0.001038118 SMO,FC=-0.07,p=0.159126695 FAM40B,FC=0.31,p=0.005375051 NRF1,FC=0.03,p=0.081898986 UBE2H,FC=0.10,p=0.056863142 CPA2,FC=0.21,p=0.014554329 CPA4,FC=0.15,p=7.45e-05 CPA5,FC=0.06,p=0.002068579 CPA1,FC=0.01,p=0.606035028 TSGA14,FC=0.06,p=0.005745424 TSGA14,FC=0.04,p=0.245178713 MEST,FC=0.05,p=0.656483264 COPG2,FC=0.08,p=0.317256708 COPG2,FC=0.07,p=0.226309087 TSGA13,FC=0.12,p=7.52e-05 KLF14,FC=-0.02,p=0.700073932 MKLN1,FC=0.01,p=0.657160723 MKLN1,FC=0.07,p=0.201622544 PODXL,FC=-0.38,p=7.76e-07 PLXNA4,FC=0.20,p=0.005968615 PLXNA4,FC=0.11,p=0.002139738 PLXNA4,FC=-0.01,p=0.679646278 CHCHD3,FC=0.10,p=0.029319272 CHCHD3,FC=-0.03,p=0.241637722

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      GCC1,FC=-0.15,p=4.33e-05 ARF5,FC=0.03,p=0.545915635 FSCN3,FC=-0.19,p=1.79e-05 SND1,FC=0.04,p=0.22404575 SND1,FC=-0.08,p=0.021983993 LRRC4,FC=0.07,p=0.642965997 LEP,FC=0.03,p=0.339430184 RBM28,FC=0.21,p=0.000223968 IMPDH1,FC=-0.04,p=0.16953995 CALU,FC=0.02,p=0.418280544 OPN1SW,FC=0.05,p=0.283215978 FLNC,FC=-0.35,p=0.00234939 ATP6V1F,FC=0.04,p=0.454067393 IRF5,FC=-0.11,p=0.003323799 TNPO3,FC=-0.19,p=0.004517576 SMO,FC=0.05,p=0.407558662 FAM40B,FC=0.29,p=0.007582733 NRF1,FC=0.04,p=0.046373753 UBE2H,FC=0.15,p=0.004387047 CPA2,FC=0.20,p=0.016422098 CPA4,FC=0.16,p=0.000203884 CPA5,FC=0.06,p=0.00836854 CPA1,FC=0.01,p=0.715845874 TSGA14,FC=0.04,p=0.053388882 TSGA14,FC=0.03,p=0.392201744 MEST,FC=0.14,p=0.140811119 COPG2,FC=-0.04,p=0.5168628 COPG2,FC=0.08,p=0.122476398 TSGA13,FC=0.12,p=0.000139545 KLF14,FC=-0.04,p=0.498705673 MKLN1,FC=0.04,p=0.188129666 MKLN1,FC=0.00,p=0.955313205 PODXL,FC=-0.63,p=1.19e-07 PLXNA4,FC=0.21,p=0.003959886 PLXNA4,FC=0.12,p=0.001030855 PLXNA4,FC=-0.04,p=0.27900928 CHCHD3,FC=0.13,p=0.003210831 CHCHD3,FC=-0.05,p=0.074090173


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-182,Mean=0.41 hsa-miR-183,Mean=0.50 hsa-miR-335,Mean=0.56 hsa-miR-29a,Mean=-1.33

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-182,Mean=0.43 hsa-miR-183,Mean=0.55 hsa-miR-335,Mean=0.61 hsa-miR-29a,Mean=-1.94

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-182,Mean=0.34 hsa-mir-96,Mean=0.58 hsa-mir-183,Mean=0.35 hsa-mir-335,Mean=-0.59 hsa-mir-29a,Mean=0.32

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-182,Mean=0.36 hsa-mir-96,Mean=0.58 hsa-mir-183,Mean=0.22 hsa-mir-335,Mean=-0.31 hsa-mir-29a,Mean=0.14

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

GCC1,FC=-0.24,p=2.16e-07 ARF5,FC=0.09,p=0.138225454 FSCN3,FC=-0.64,p=3.4e-10 PAX4,FC=0.40,p=0.004092943 PAX4,FC=-0.40,p=0.003079078 SND1,FC=0.52,p=1.6e-18 LEP,FC=-0.03,p=0.855788933 RBM28,FC=0.67,p=1.81e-17 IMPDH1,FC=-0.42,p=3.87e-12 C7orf68,FC=0.14,p=0.199209296 CALU,FC=1.10,p=2.68e-16 CALU,FC=1.60,p=2.07e-32 CALU,FC=0.55,p=2.39e-13 CALU,FC=1.22,p=3.1e-30 OPN1SW,FC=-0.58,p=1.46e-08 FLNC,FC=-0.54,p=2.8e-06 ATP6V1F,FC=-0.09,p=0.123671276 IRF5,FC=-0.30,p=8.07e-05 IRF5,FC=0.32,p=0.016174898 TNPO3,FC=-0.32,p=2.9e-07 TNPO3,FC=0.49,p=1.18e-06 TNPO3,FC=0.12,p=0.044359069 SMO,FC=0.77,p=6.38e-09 AHCYL2,FC=-0.36,p=0.002196589 AHCYL2,FC=0.35,p=0.005797249 NRF1,FC=0.45,p=0.000497534 NRF1,FC=-0.27,p=0.032156786 NRF1,FC=0.41,p=3.24e-07 NRF1,FC=-0.40,p=2.52e-16 UBE2H,FC=1.66,p=6.78e-55 UBE2H,FC=0.69,p=1.45e-12 KLHDC10,FC=-0.14,p=0.032679212 KLHDC10,FC=-0.23,p=0.009827282 TMEM209,FC=0.73,p=2.53e-06 CPA2,FC=-0.52,p=4.08e-09 CPA4,FC=-0.70,p=1.91e-17 CPA1,FC=-0.18,p=0.243968758 TSGA14,FC=-0.30,p=0.027895561 MEST,FC=0.50,p=7.74e-08 MKLN1,FC=0.84,p=2.1e-17 PODXL,FC=-1.25,p=9.23e-48 CHCHD3,FC=-0.06,p=0.369568718

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-224A1, 7/50, 0.14 RP11-224A1, 3/50, 0.06 RP11-128A6, 10/50, 0.2 RP11-128A6, 0/50, 0 RP11-437L1, 26/50, 0.52 RP11-437L1, 1/50, 0.02 RP5-999D10, 22/50, 0.44 RP5-999D10, 3/50, 0.06 RP11-36B6, 8/50, 0.16 RP11-36B6, 2/50, 0.04 RP11-329I5, 6/50, 0.12 RP11-329I5, 0/50, 0 RP11-193I17, 3/50, 0.06 RP11-193I17, 3/50, 0.06 RP11-355K3, 0/50, 0 RP11-355K3, 3/50, 0.06

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=14581340

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D7S530, 2/17, 12% PMID=10987304 D7S640, 4/18, 22%

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