IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Move   
-
        
   Zoom

    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      AKR1B1,FC=-0.20,p=0.194338086 AKR1B10,FC=1.60,p=0.000107136 BPGM,FC=-0.14,p=0.251916466 CALD1,FC=-0.83,p=4.66e-08 CALD1,FC=-0.54,p=0.000504097 CNOT4,FC=-0.25,p=0.000916653 NUP205,FC=0.12,p=0.201955546 PTN,FC=-2.02,p=3.65e-10 PTN,FC=-1.08,p=2.95e-07 CREB3L2,FC=0.21,p=0.034738791

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      AKR1B1,FC=0.11,p=0.45073018 AKR1B10,FC=3.88,p=7.14e-10 BPGM,FC=0.26,p=0.086511251 CALD1,FC=-0.74,p=5.28e-05 CALD1,FC=-0.51,p=0.011437622 CNOT4,FC=-0.02,p=0.823320613 NUP205,FC=0.95,p=1.15e-11 PTN,FC=-0.90,p=0.001694477 PTN,FC=-0.47,p=0.026655999 CREB3L2,FC=-0.36,p=0.000515735


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CHCHD3,FC=0.27,p=2.1e-05 AKR1B1,FC=-0.21,p=0.041672624 AKR1B10,FC=1.89,p=8.86e-10 BPGM,FC=0.04,p=0.495540682 CALD1,FC=-0.16,p=0.102781068 CALD1,FC=-0.39,p=0.006167505 CALD1,FC=-0.79,p=1.87e-18 CALD1,FC=0.04,p=0.728782049 CALD1,FC=-0.25,p=0.005504731 CALD1,FC=0.33,p=0.010660938 CALD1,FC=-0.31,p=0.000870947 CALD1,FC=-0.12,p=0.315366842 AGBL3,FC=-0.44,p=0.026351671 TMEM140,FC=-1.00,p=1.05e-37 C7orf49,FC=0.21,p=8.45e-05 WDR91,FC=-0.24,p=0.000840228 CNOT4,FC=0.01,p=0.873419419 CNOT4,FC=0.34,p=0.002168877 CNOT4,FC=0.22,p=0.002644608 CNOT4,FC=0.33,p=0.003561748 CNOT4,FC=0.56,p=9.03e-07 NUP205,FC=0.35,p=5.88e-07 NUP205,FC=0.36,p=9.15e-05 SLC13A4,FC=-0.33,p=0.000284197 CHRM2,FC=-0.23,p=0.068874491 PTN,FC=-0.82,p=2.83e-14 PTN,FC=-1.36,p=1.91e-18 PTN,FC=-1.46,p=5.35e-23 DGKI,FC=-0.14,p=0.25420882 CREB3L2,FC=0.29,p=1.51e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CHCHD3,FC=-1.50,p=8.36e-55 AKR1B1,FC=-1.74,p=1.04e-46 AKR1B10,FC=0.19,p=0.188679415 BPGM,FC=1.23,p=2.95e-45 CALD1,FC=1.39,p=5.36e-35 CALD1,FC=2.69,p=4.32e-49 CALD1,FC=-9.23,p=1.17e-159 CALD1,FC=2.67,p=1.66e-68 CALD1,FC=1.08,p=6.29e-25 CALD1,FC=2.09,p=4.85e-51 CALD1,FC=-0.44,p=5.08e-06 CALD1,FC=1.00,p=4.1e-19 AGBL3,FC=0.57,p=0.01546088 TMEM140,FC=-0.54,p=1.38e-09 C7orf49,FC=-6.41,p=6.91e-138 WDR91,FC=-1.93,p=3.01e-48 CNOT4,FC=1.07,p=8.21e-30 CNOT4,FC=2.22,p=1.44e-50 CNOT4,FC=3.25,p=1.5e-95 CNOT4,FC=3.47,p=5.8e-68 CNOT4,FC=2.03,p=5.99e-40 NUP205,FC=-0.58,p=2.54e-07 NUP205,FC=3.80,p=1.08e-59 SLC13A4,FC=1.02,p=1.51e-22 CHRM2,FC=0.97,p=6.06e-08 PTN,FC=0.41,p=2.74e-07 PTN,FC=3.05,p=7.37e-111 PTN,FC=-4.28,p=1.61e-84 DGKI,FC=-2.20,p=1.88e-46 CREB3L2,FC=-5.79,p=9.28e-119


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CHCHD3,FC=0.28,p=5.2e-06 CHCHD3,FC=-0.12,p=0.466323078 EXOC4,FC=0.29,p=1.46e-05 EXOC4,FC=0.16,p=0.42422146 EXOC4,FC=0.30,p=0.037969162 LRGUK,FC=0.14,p=0.298475549 SLC35B4,FC=-0.07,p=0.347315312 SLC35B4,FC=-0.23,p=0.004418946 SLC35B4,FC=-1.22,p=5.8e-09 AKR1B1,FC=-0.22,p=0.090408547 AKR1B10,FC=2.22,p=5.8e-09 BPGM,FC=-0.01,p=0.898431551 BPGM,FC=0.38,p=0.000728162 CALD1,FC=-0.29,p=0.143852434 CALD1,FC=-0.12,p=0.380556594 CALD1,FC=0.28,p=0.171047809 CALD1,FC=-0.59,p=0.000298367 CALD1,FC=0.75,p=0.000571964 CALD1,FC=-0.30,p=0.006841792 CALD1,FC=-0.36,p=0.036489156 CALD1,FC=-0.25,p=0.05120604 CALD1,FC=-0.09,p=0.53164719 CALD1,FC=-0.65,p=5.71e-10 CALD1,FC=-0.39,p=0.016519262 AGBL3,FC=-0.42,p=0.017027884 AGBL3,FC=-0.95,p=4.41e-05 TMEM140,FC=-0.85,p=5.41e-16 C7orf49,FC=0.64,p=3.16e-17 WDR91,FC=-0.22,p=0.026587033 WDR91,FC=0.02,p=0.842493176 WDR91,FC=-0.53,p=0.002150274 CNOT4,FC=0.50,p=0.003100006 CNOT4,FC=-0.26,p=6.38e-05 CNOT4,FC=-0.07,p=0.653580773 CNOT4,FC=-0.57,p=1.68e-06 CNOT4,FC=-0.10,p=0.486390454 NUP205,FC=0.09,p=0.336009813 NUP205,FC=0.36,p=1.74e-06 PL-5283,FC=0.61,p=0.000289823 PL-5283,FC=-0.09,p=0.315454071 PL-5283,FC=0.27,p=0.006610221 PL-5283,FC=0.87,p=5.6e-28 SLC13A4,FC=0.27,p=0.110779745 LUZP6,FC=-0.26,p=8.31e-06 CHRM2,FC=0.43,p=0.026435355 PTN,FC=-1.26,p=1.76e-13 PTN,FC=-1.04,p=5.61e-10 PTN,FC=-0.85,p=1.11e-08 DGKI,FC=0.57,p=0.002050272 CREB3L2,FC=0.15,p=0.274253022 CREB3L2,FC=0.80,p=1.68e-06 CREB3L2,FC=0.27,p=0.022350127 CREB3L2,FC=0.13,p=0.110768059

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CHCHD3,FC=0.53,p=1.34e-15 CHCHD3,FC=-0.29,p=0.031173346 EXOC4,FC=0.46,p=1.79e-08 EXOC4,FC=-0.28,p=0.066110876 EXOC4,FC=0.26,p=0.134155445 LRGUK,FC=0.28,p=0.130336137 SLC35B4,FC=0.06,p=0.369922314 SLC35B4,FC=-0.16,p=0.037054991 SLC35B4,FC=-1.56,p=7.79e-10 AKR1B1,FC=0.02,p=0.863300791 AKR1B10,FC=6.02,p=4.95e-35 BPGM,FC=0.21,p=0.044270536 BPGM,FC=0.52,p=7.76e-06 CALD1,FC=-0.21,p=0.2297497 CALD1,FC=0.14,p=0.238928229 CALD1,FC=0.51,p=0.002235237 CALD1,FC=-0.66,p=6.15e-05 CALD1,FC=1.44,p=5.2e-09 CALD1,FC=-0.43,p=0.001639375 CALD1,FC=-0.33,p=0.075580485 CALD1,FC=-0.45,p=0.005863531 CALD1,FC=0.07,p=0.620086824 CALD1,FC=-0.63,p=2.19e-07 CALD1,FC=-0.54,p=2.17e-05 AGBL3,FC=-1.23,p=5.93e-06 AGBL3,FC=-1.86,p=3.2e-12 TMEM140,FC=-1.32,p=3.55e-18 C7orf49,FC=1.02,p=7.09e-27 WDR91,FC=-0.45,p=2.42e-05 WDR91,FC=0.27,p=0.013297155 WDR91,FC=-0.81,p=0.000808496 CNOT4,FC=0.49,p=0.024694535 CNOT4,FC=-0.33,p=4.68e-06 CNOT4,FC=0.01,p=0.969077624 CNOT4,FC=-0.51,p=4.08e-05 CNOT4,FC=-0.25,p=0.175246865 NUP205,FC=0.20,p=0.064981863 NUP205,FC=0.80,p=1.13e-17 PL-5283,FC=0.99,p=1.14e-07 PL-5283,FC=0.10,p=0.313999422 PL-5283,FC=0.42,p=4.38e-05 PL-5283,FC=1.35,p=2.2e-40 SLC13A4,FC=0.87,p=1.6e-05 LUZP6,FC=0.05,p=0.414205774 CHRM2,FC=0.86,p=0.000164784 PTN,FC=0.16,p=0.447060779 PTN,FC=0.24,p=0.254289834 PTN,FC=0.55,p=0.00162828 DGKI,FC=1.05,p=5.35e-07 CREB3L2,FC=-0.58,p=0.003013888 CREB3L2,FC=1.03,p=7.43e-08 CREB3L2,FC=0.62,p=3.43e-06 CREB3L2,FC=-0.44,p=5.55e-07


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      BPGM,FC=-0.74,p=0.078486745 BPGM,FC=-0.19,p=0.436207562 CALD1,FC=0.24,p=0.516927314 CNOT4,FC=0.04,p=0.903141232 PTN,FC=-1.25,p=0.020763561 PTN,FC=-1.25,p=0.020763561 DGKI,FC=0.29,p=0.484194235

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      BPGM,FC=-0.14,p=0.744384583 BPGM,FC=-0.06,p=0.811977292 CALD1,FC=-0.23,p=0.57545529 CNOT4,FC=-0.16,p=0.664854802 PTN,FC=-0.50,p=0.325309659 PTN,FC=-0.50,p=0.325309659 DGKI,FC=0.71,p=0.267473079


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CHCHD3,FC=0.10,p=0.029319272 CHCHD3,FC=-0.03,p=0.241637722 SLC35B4,FC=-0.02,p=0.681249485 AKR1B1,FC=-0.20,p=0.125955585 AKR1B10,FC=0.41,p=0.027084857 BPGM,FC=0.26,p=0.004113698 BPGM,FC=-0.02,p=0.282382634 CALD1,FC=-0.25,p=0.009560663 CALD1,FC=-0.25,p=0.03309729 CNOT4,FC=0.01,p=0.773026622 NUP205,FC=0.08,p=0.05160045 CHRM2,FC=0.01,p=0.579608369 DGKI,FC=0.03,p=0.24469252 DGKI,FC=0.04,p=0.378651576 CREB3L2,FC=0.03,p=0.385278181

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CHCHD3,FC=0.13,p=0.003210831 CHCHD3,FC=-0.05,p=0.074090173 SLC35B4,FC=-0.05,p=0.302018111 AKR1B1,FC=0.34,p=0.092789216 AKR1B10,FC=1.47,p=2.95e-05 BPGM,FC=0.24,p=0.016284071 BPGM,FC=-0.02,p=0.352661362 CALD1,FC=-0.24,p=0.013350704 CALD1,FC=-0.29,p=0.027838174 CNOT4,FC=-0.01,p=0.866273445 NUP205,FC=0.13,p=0.002139886 CHRM2,FC=0.06,p=0.050795149 DGKI,FC=0.02,p=0.412082393 DGKI,FC=0.09,p=0.266388749 CREB3L2,FC=-0.02,p=0.400069597


< Top >


    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

< Top >


    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-490,Mean=-0.03

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-490,Mean=-0.12

< Top >


    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

CHCHD3,FC=-0.06,p=0.369568718 AKR1B1,FC=-0.34,p=0.000935456 AKR1B10,FC=1.68,p=1.53e-07 BPGM,FC=0.28,p=0.000526833 CALD1,FC=0.00,p=0.987458283 CALD1,FC=-0.49,p=0.000534674 CALD1,FC=-0.56,p=2.06e-11 CALD1,FC=0.19,p=0.110505168 CALD1,FC=-0.39,p=0.000141592 CALD1,FC=1.38,p=1.83e-25 CALD1,FC=0.09,p=0.424855249 CALD1,FC=0.56,p=0.00010717 AGBL3,FC=-0.28,p=0.218250798 TMEM140,FC=-1.08,p=1.35e-32 C7orf49,FC=0.14,p=0.003984453 WDR91,FC=-0.41,p=5.02e-08 CNOT4,FC=-0.04,p=0.407144118 CNOT4,FC=0.48,p=1.06e-05 CNOT4,FC=0.04,p=0.70279257 CNOT4,FC=0.84,p=3.33e-13 CNOT4,FC=1.00,p=1.37e-15 NUP205,FC=0.28,p=0.000121982 NUP205,FC=0.19,p=0.056955624 SLC13A4,FC=-0.39,p=0.000179667 CHRM2,FC=-0.61,p=0.000254241 PTN,FC=-0.73,p=1.32e-10 PTN,FC=-1.19,p=4.48e-14 PTN,FC=-1.14,p=8.29e-14 DGKI,FC=-0.13,p=0.367066509 CREB3L2,FC=0.42,p=5.67e-09

< Top >


    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-239G19, 27/50, 0.54 RP11-239G19, 5/50, 0.1 RP11-221G19, 5/50, 0.1 RP11-221G19, 3/50, 0.06 RP11-371N6, 10/50, 0.2 RP11-371N6, 1/50, 0.02 RP11-88K4, 8/50, 0.16 RP11-88K4, 5/50, 0.1 RP11-102G17, 4/50, 0.08 RP11-102G17, 2/50, 0.04 RP11-8P6, 4/50, 0.08 RP11-8P6, 4/50, 0.08

< Top >


    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

< Top >


    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

Download all image files.
Save all PNG files.    Save all PDF files.    Save all PS files.