IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , EPHA1, 0.50%, 1/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.63,p=0.002465129 OR2F2,FC=-0.03,p=0.730936571 OR2F1,FC=0.01,p=0.896674039 ARHGEF5,FC=0.21,p=0.017562862 CNTNAP2,FC=0.41,p=0.056471947

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=1.46,p=2.25e-07 OR2F2,FC=-0.10,p=0.454955512 OR2F1,FC=0.17,p=0.088622479 ARHGEF5,FC=0.78,p=7.72e-08 CNTNAP2,FC=1.46,p=0.000108552


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.08,p=0.319438962 OR2F2,FC=-0.07,p=0.569765517 OR2F1,FC=-0.39,p=0.003236444 ARHGEF5,FC=0.21,p=0.007353184 TPK1,FC=-0.84,p=5.54e-30 EEF1D,FC=-0.22,p=0.062473264 CNTNAP2,FC=-0.08,p=0.406404557 CNTNAP2,FC=-0.00,p=0.98553948 CNTNAP2,FC=0.39,p=0.017881755 CNTNAP2,FC=-0.26,p=0.005470495

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=-0.54,p=1.36e-07 OR2F2,FC=1.67,p=4.02e-38 OR2F1,FC=0.39,p=0.000187421 ARHGEF5,FC=-1.33,p=8.32e-31 TPK1,FC=-4.06,p=1.59e-96 EEF1D,FC=-2.11,p=6.66e-36 CNTNAP2,FC=-0.92,p=1.39e-07 CNTNAP2,FC=2.58,p=3.44e-72 CNTNAP2,FC=3.96,p=2.32e-85 CNTNAP2,FC=-0.96,p=5.94e-13


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.19,p=0.376983148 EPHA1,FC=0.58,p=3.83e-06 TAS2R41,FC=-0.20,p=0.293824986 FAM115C,FC=0.01,p=0.956785192 OR2F2,FC=0.66,p=0.000107724 OR2F1,FC=0.23,p=0.193349143 OR6B1,FC=0.26,p=0.230018589 OR2A20P,FC=-1.31,p=1.25e-12 ARHGEF5,FC=0.09,p=0.349789087 NOBOX,FC=0.65,p=0.000863459 TPK1,FC=-1.17,p=2.23e-13 TPK1,FC=-0.94,p=1.49e-17 EEF1D,FC=-0.75,p=7.35e-05 CNTNAP2,FC=0.51,p=0.011167119 CNTNAP2,FC=0.74,p=0.000698771 CNTNAP2,FC=0.76,p=0.002105533 CNTNAP2,FC=-0.08,p=0.692555006 CNTNAP2,FC=0.72,p=0.003762565

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.51,p=0.043228755 EPHA1,FC=1.53,p=3.03e-20 TAS2R41,FC=0.03,p=0.871807801 FAM115C,FC=0.10,p=0.569074377 OR2F2,FC=0.99,p=1.02e-05 OR2F1,FC=0.16,p=0.442154469 OR6B1,FC=0.49,p=0.049658912 OR2A20P,FC=-1.52,p=2.61e-13 ARHGEF5,FC=0.84,p=1.91e-08 NOBOX,FC=1.54,p=6.04e-12 TPK1,FC=-1.87,p=5.77e-19 TPK1,FC=-1.49,p=7.58e-27 EEF1D,FC=-0.11,p=0.40474324 CNTNAP2,FC=2.08,p=1.25e-12 CNTNAP2,FC=2.38,p=2.25e-14 CNTNAP2,FC=2.51,p=9.77e-11 CNTNAP2,FC=-0.24,p=0.269411579 CNTNAP2,FC=2.57,p=4.12e-14


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.64,p=0.060159131 EPHA1,FC=0.64,p=0.060159131 ARHGEF5,FC=-0.20,p=0.470447451 ARHGEF5,FC=0.34,p=0.181464714 TPK1,FC=-1.10,p=4.61e-05 CNTNAP2,FC=0.43,p=0.339745603 CNTNAP2,FC=-0.38,p=0.350685956 CNTNAP2,FC=0.80,p=0.096553951 CNTNAP2,FC=0.87,p=0.04561241

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.80,p=0.12966012 EPHA1,FC=0.80,p=0.12966012 ARHGEF5,FC=0.22,p=0.523238746 ARHGEF5,FC=0.13,p=0.702585446 TPK1,FC=-1.14,p=0.000170967 CNTNAP2,FC=2.71,p=0.000723708 CNTNAP2,FC=1.37,p=0.035190974 CNTNAP2,FC=3.06,p=0.000274346 CNTNAP2,FC=2.42,p=3.57e-05


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=-0.08,p=0.40492818 ARHGEF5,FC=-0.07,p=0.266633031 TPK1,FC=-0.09,p=0.025338398 CNTNAP2,FC=0.33,p=0.015969096 CNTNAP2,FC=0.01,p=0.851396084

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      EPHA1,FC=0.01,p=0.894627284 ARHGEF5,FC=0.11,p=0.191478049 TPK1,FC=-0.16,p=4.53e-06 CNTNAP2,FC=0.64,p=0.000546401 CNTNAP2,FC=0.11,p=0.12998181


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

EPHA1,FC=-0.05,p=0.57667984 OR2F2,FC=0.05,p=0.679564267 OR2F1,FC=-0.36,p=0.014981081 ARHGEF5,FC=-0.04,p=0.672860913 TPK1,FC=-0.77,p=7.69e-23 EEF1D,FC=0.05,p=0.674997057 CNTNAP2,FC=-0.00,p=0.983545239 CNTNAP2,FC=0.26,p=0.149276744 CNTNAP2,FC=0.34,p=0.090228965 CNTNAP2,FC=-0.66,p=1.37e-06

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-298A10, 12/50, 0.24 RP11-298A10, 9/50, 0.18 RP4-721B17, 6/50, 0.12 RP4-721B17, 1/50, 0.02 RP11-374N8, 4/50, 0.08 RP11-374N8, 6/50, 0.12 RP5-819O4, 5/50, 0.1 RP5-819O4, 3/50, 0.06 RP4-558L10, 3/50, 0.06 RP4-558L10, 7/50, 0.14 RP4-811H12, 7/50, 0.14 RP4-811H12, 5/50, 0.1 RP11-302C22, 19/50, 0.38 RP11-302C22, 1/50, 0.02

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

PMID=10987304 D7S661, 1/19, 5%

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