IGDB.NSCLC Chromosome View

Chromosome 7
7p22 7p21 7p15 7p14 7p13 7p12 7p11 7q11 7q21 7q22 7q31 7q32 7q33 7q34 7q35 7q36         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

XRCC2, up, 45/50(90%,3.51))(Fold Change) CDK5, 0.50%, 1/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=0.41,p=0.056471947 CUL1,FC=0.08,p=0.242768664 CUL1,FC=-0.11,p=0.146334657 EZH2,FC=1.27,p=1.06e-14 PDIA4,FC=0.78,p=1.38e-19 ZNF282,FC=0.36,p=0.000672879 ZNF212,FC=0.33,p=0.003022676 ZNF467,FC=-0.06,p=0.749305781 ZNF467,FC=-0.13,p=0.441864762 ZNF862,FC=-0.27,p=0.153660141 ATP6V0E2,FC=0.49,p=2.16e-06 RARRES2,FC=-0.89,p=8.39e-08 GIMAP5,FC=0.26,p=0.255479378 ABP1,FC=1.75,p=3.87e-08 KCNH2,FC=0.38,p=0.000427467 KCNH2,FC=0.32,p=0.061274467 NOS3,FC=-0.45,p=0.096507899 NOS3,FC=-0.10,p=0.381841177 ABCB8,FC=0.42,p=2.24e-06 ACCN3,FC=0.60,p=8.24e-05 CDK5,FC=0.33,p=0.118430515 CDK5,FC=0.59,p=0.002613822 SLC4A2,FC=0.18,p=0.007169106 FASTK,FC=0.41,p=1.1e-08 GBX1,FC=-0.06,p=0.526031055 SMARCD3,FC=-0.94,p=8.18e-05 SMARCD3,FC=-0.69,p=0.002671496 RHEB,FC=0.38,p=0.000414692 RHEB,FC=0.44,p=0.001333827 XRCC2,FC=0.24,p=0.105397767 DPP6,FC=-0.28,p=0.122104211 DPP6,FC=-0.54,p=0.007130959 PAXIP1,FC=0.34,p=8.84e-06 INSIG1,FC=-1.37,p=2.23e-17 EN2,FC=0.70,p=0.001468002 EN2,FC=0.47,p=0.016416267 SHH,FC=-0.12,p=0.240092132

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=1.46,p=0.000108552 CUL1,FC=0.16,p=0.142589613 CUL1,FC=-0.07,p=0.578671084 EZH2,FC=2.04,p=1.72e-13 PDIA4,FC=0.59,p=2.45e-07 ZNF282,FC=0.38,p=0.016195678 ZNF212,FC=0.35,p=0.0239187 ZNF467,FC=-0.08,p=0.708571802 ZNF467,FC=-0.54,p=0.004450022 ZNF862,FC=-0.51,p=0.006520335 ATP6V0E2,FC=0.24,p=0.032709411 RARRES2,FC=-1.45,p=1.16e-11 GIMAP5,FC=0.42,p=0.255379837 ABP1,FC=0.66,p=0.001029332 KCNH2,FC=0.48,p=0.000977989 KCNH2,FC=0.49,p=0.039493323 NOS3,FC=-1.29,p=2.14e-05 NOS3,FC=-0.02,p=0.884740278 ABCB8,FC=0.38,p=0.003097542 ACCN3,FC=0.83,p=0.000769448 CDK5,FC=0.31,p=0.206274654 CDK5,FC=0.60,p=0.016138187 SLC4A2,FC=-0.40,p=6.04e-06 FASTK,FC=0.27,p=0.002466879 GBX1,FC=-0.13,p=0.416197227 SMARCD3,FC=-2.15,p=2.23e-11 SMARCD3,FC=-1.85,p=3.22e-09 RHEB,FC=0.15,p=0.214333925 RHEB,FC=0.44,p=0.055286962 XRCC2,FC=0.77,p=4.63e-05 DPP6,FC=-0.68,p=0.007334989 DPP6,FC=-0.03,p=0.854224849 PAXIP1,FC=0.34,p=0.002095035 INSIG1,FC=-1.30,p=1.23e-08 EN2,FC=1.04,p=0.002152036 EN2,FC=0.45,p=0.076733596 SHH,FC=-0.08,p=0.449214583


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=-0.08,p=0.406404557 CNTNAP2,FC=-0.26,p=0.005470495 CNTNAP2,FC=0.39,p=0.017881755 CNTNAP2,FC=-0.00,p=0.98553948 CUL1,FC=0.07,p=0.167953579 EZH2,FC=1.58,p=6.73e-31 EZH2,FC=0.31,p=0.000865711 PDIA4,FC=1.39,p=1.98e-59 PDIA4,FC=1.06,p=3.56e-39 ZNF282,FC=0.19,p=0.000527704 ZNF212,FC=0.49,p=2.31e-20 ZNF783,FC=-0.22,p=0.000870802 ZNF783,FC=0.01,p=0.916496439 ZNF783,FC=0.09,p=0.118740947 ZNF767,FC=-0.09,p=0.084877427 ZNF467,FC=-0.14,p=0.022206718 ZNF862,FC=-0.32,p=0.005130448 ATP6V0E2,FC=0.46,p=4.02e-07 LRRC61,FC=0.51,p=4.92e-05 RARRES2,FC=-1.21,p=2.99e-19 REPIN1,FC=0.63,p=6.96e-18 GIMAP4,FC=-1.60,p=3.02e-43 GIMAP6,FC=-2.13,p=8.38e-54 GIMAP5,FC=-1.48,p=2.11e-77 GIMAP5,FC=-0.38,p=0.002071581 GIMAP5,FC=-1.58,p=8.8e-74 TMEM176B,FC=0.53,p=7.68e-06 TMEM176A,FC=0.07,p=0.473169561 ABP1,FC=1.47,p=7.36e-15 S100A11,FC=0.38,p=7.79e-10 KCNH2,FC=-0.15,p=0.109965282 KCNH2,FC=0.17,p=0.201971234 NOS3,FC=0.38,p=0.0293075 ABCB8,FC=1.00,p=1.93e-10 ACCN3,FC=0.26,p=0.000488459 CDK5,FC=1.27,p=1.77e-27 SLC4A2,FC=0.59,p=1.03e-06 FASTK,FC=1.84,p=4.69e-45 FASTK,FC=0.25,p=1.11e-05 FASTK,FC=1.10,p=3.88e-22 GBX1,FC=0.04,p=0.576682705 ABCF2,FC=0.14,p=0.202854268 ABCF2,FC=0.27,p=4.87e-09 ABCF2,FC=-1.17,p=7.67e-13 ABCF2,FC=0.95,p=7.04e-24 CHPF2,FC=0.58,p=8.46e-24 CHPF2,FC=0.90,p=3.16e-22 SMARCD3,FC=-0.23,p=0.004285197 RHEB,FC=0.49,p=1.17e-12 RHEB,FC=1.57,p=7.11e-21 PRKAG2,FC=-0.16,p=0.008904122 PRKAG2,FC=1.35,p=6.53e-16 GALNT11,FC=-0.02,p=0.776651372 XRCC2,FC=0.36,p=8.31e-06 ACTR3B,FC=0.46,p=4.77e-08 DPP6,FC=-0.96,p=5.28e-27 PAXIP1,FC=0.51,p=1.82e-20 HTR5A,FC=-0.42,p=4.44e-06 INSIG1,FC=-0.04,p=0.575157512 INSIG1,FC=-0.90,p=2.41e-30 INSIG1,FC=-0.81,p=1.66e-20 EN2,FC=0.00,p=0.993967501 SHH,FC=0.10,p=0.413784245

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=-0.92,p=1.39e-07 CNTNAP2,FC=-0.96,p=5.94e-13 CNTNAP2,FC=3.96,p=2.32e-85 CNTNAP2,FC=2.58,p=3.44e-72 CUL1,FC=-3.99,p=7.2e-57 EZH2,FC=2.83,p=1.38e-60 EZH2,FC=-0.05,p=0.562714465 PDIA4,FC=-5.44,p=6.54e-136 PDIA4,FC=-0.71,p=7.82e-26 ZNF282,FC=3.31,p=2.34e-132 ZNF212,FC=3.46,p=2.01e-132 ZNF783,FC=-0.19,p=0.102373232 ZNF783,FC=-4.04,p=1.73e-83 ZNF783,FC=0.02,p=0.786884686 ZNF767,FC=0.78,p=2.09e-06 ZNF467,FC=-0.29,p=0.051607585 ZNF862,FC=1.78,p=1.03e-54 ATP6V0E2,FC=1.31,p=2.15e-63 LRRC61,FC=3.98,p=3.49e-108 RARRES2,FC=-2.14,p=6.9e-64 REPIN1,FC=-1.03,p=1.54e-23 GIMAP4,FC=-2.15,p=1.23e-73 GIMAP6,FC=-2.54,p=2.5e-56 GIMAP5,FC=-7.28,p=1.93e-212 GIMAP5,FC=1.47,p=4.05e-15 GIMAP5,FC=-3.97,p=6.01e-83 TMEM176B,FC=-1.67,p=4.66e-55 TMEM176A,FC=-1.13,p=1.55e-40 ABP1,FC=1.35,p=8.5e-40 S100A11,FC=-7.09,p=1.28e-118 KCNH2,FC=0.63,p=2.09e-07 KCNH2,FC=0.20,p=0.13332881 NOS3,FC=-0.35,p=0.135871696 ABCB8,FC=3.57,p=4.66e-65 ACCN3,FC=0.95,p=9.95e-13 CDK5,FC=2.36,p=5.48e-59 SLC4A2,FC=1.86,p=1.8e-44 FASTK,FC=3.16,p=3.81e-87 FASTK,FC=-0.34,p=0.003176804 FASTK,FC=-1.36,p=6.44e-17 GBX1,FC=2.99,p=5.65e-60 ABCF2,FC=5.25,p=5e-124 ABCF2,FC=1.45,p=1.97e-75 ABCF2,FC=-0.05,p=0.741917815 ABCF2,FC=-1.32,p=3.27e-27 CHPF2,FC=-6.46,p=4.74e-112 CHPF2,FC=-0.50,p=0.000594432 SMARCD3,FC=-1.34,p=1.8e-22 RHEB,FC=-1.53,p=2.08e-63 RHEB,FC=7.18,p=8.83e-123 PRKAG2,FC=2.33,p=9.61e-77 PRKAG2,FC=2.61,p=6.12e-36 GALNT11,FC=-0.76,p=2.57e-23 XRCC2,FC=-4.17,p=2.55e-106 ACTR3B,FC=2.33,p=3.71e-66 DPP6,FC=-4.34,p=1.15e-77 PAXIP1,FC=6.31,p=6.21e-232 HTR5A,FC=-1.45,p=2.41e-31 INSIG1,FC=3.15,p=7.05e-118 INSIG1,FC=-0.32,p=3.89e-06 INSIG1,FC=1.49,p=8.8e-49 EN2,FC=2.73,p=5.11e-70 SHH,FC=1.63,p=5.94e-35


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=-0.08,p=0.692555006 CNTNAP2,FC=0.51,p=0.011167119 CNTNAP2,FC=0.74,p=0.000698771 CNTNAP2,FC=0.72,p=0.003762565 CNTNAP2,FC=0.76,p=0.002105533 C7orf33,FC=0.50,p=0.001520921 CUL1,FC=-0.36,p=0.000711856 CUL1,FC=-0.69,p=7e-05 CUL1,FC=-0.34,p=4.72e-06 EZH2,FC=1.00,p=2.3e-15 EZH2,FC=1.35,p=1.95e-26 PDIA4,FC=1.59,p=3.68e-36 PDIA4,FC=1.32,p=4.73e-25 ZNF786,FC=0.33,p=9.66e-05 ZNF425,FC=0.43,p=0.025527123 ZNF398,FC=-0.07,p=0.468231015 ZNF398,FC=-0.02,p=0.810942049 ZNF398,FC=0.62,p=1.57e-09 ZNF282,FC=0.43,p=3.63e-06 ZNF212,FC=0.42,p=5.58e-12 ZNF783,FC=0.13,p=0.19669612 ZNF783,FC=0.27,p=0.000299051 ZNF783,FC=0.20,p=0.109036529 ZNF777,FC=0.06,p=0.770533924 ZNF777,FC=-0.42,p=0.013312609 ZNF777,FC=-0.05,p=0.625201741 ZNF746,FC=0.28,p=0.109836209 ZNF746,FC=-0.05,p=0.468271431 ZNF767,FC=0.26,p=0.002456472 KRBA1,FC=0.00,p=0.986086668 ZNF467,FC=0.00,p=0.980700744 SSPO,FC=-0.28,p=0.057390275 ZNF862,FC=0.54,p=1.75e-07 ZNF862,FC=-0.24,p=0.091637223 ATP6V0E2,FC=0.62,p=1.51e-06 ARP11,FC=0.16,p=0.155560126 LRRC61,FC=0.65,p=8.7e-06 RARRES2,FC=-0.95,p=6.95e-08 REPIN1,FC=0.43,p=2.06e-07 REPIN1,FC=1.19,p=2.21e-08 ZNF775,FC=0.11,p=0.213271992 GIMAP8,FC=-1.94,p=2.2e-49 GIMAP8,FC=-1.40,p=6.39e-12 GIMAP7,FC=-1.43,p=2.52e-27 GIMAP4,FC=-1.40,p=4.45e-20 GIMAP6,FC=-1.91,p=7.23e-32 GIMAP6,FC=-1.76,p=2.41e-31 GIMAP2,FC=-0.86,p=1.55e-06 GIMAP1,FC=-0.89,p=4.05e-14 GIMAP1,FC=-2.16,p=3.98e-31 GIMAP1,FC=-1.20,p=1.86e-17 GIMAP5,FC=0.24,p=0.280860903 GIMAP5,FC=-1.15,p=1.47e-24 GIMAP5,FC=-0.88,p=3.52e-17 TMEM176B,FC=0.62,p=3.09e-05 TMEM176B,FC=-0.21,p=0.260025659 TMEM176A,FC=0.66,p=8.26e-06 ABP1,FC=1.83,p=1.07e-09 S100A11,FC=0.98,p=4.76e-15 KCNH2,FC=-0.44,p=0.052831661 KCNH2,FC=0.27,p=0.039504876 NOS3,FC=0.18,p=0.295613263 NOS3,FC=-0.19,p=0.419794089 ATG9B,FC=1.16,p=4.37e-08 ATG9B,FC=0.43,p=0.022318682 ABCB8,FC=0.76,p=0.000334838 ABCB8,FC=0.10,p=0.249922795 ACCN3,FC=0.38,p=0.023407972 CDK5,FC=0.75,p=6.93e-09 SLC4A2,FC=0.41,p=9.08e-05 FASTK,FC=0.86,p=9.67e-16 FASTK,FC=0.97,p=6.52e-23 FASTK,FC=0.97,p=8.44e-17 TMUB1,FC=0.85,p=1.73e-10 AGAP3,FC=-0.08,p=0.271758829 AGAP3,FC=0.66,p=0.002539609 AGAP3,FC=0.27,p=0.097264392 AGAP3,FC=0.65,p=0.000619025 GBX1,FC=-0.22,p=0.045266234 ASB10,FC=0.21,p=0.275005998 ASB10,FC=0.62,p=7.51e-06 ASB10,FC=0.06,p=0.705476863 ABCF2,FC=0.20,p=0.119107892 ABCF2,FC=0.63,p=2.39e-14 ABCF2,FC=-0.34,p=0.025335192 ABCF2,FC=-1.57,p=2.63e-13 CHPF2,FC=0.78,p=9.49e-22 CHPF2,FC=0.55,p=3.96e-10 SMARCD3,FC=-0.30,p=0.004991262 NUB1,FC=-0.52,p=0.009459598 NUB1,FC=0.61,p=3.61e-09 NUB1,FC=0.03,p=0.735347143 WDR86,FC=-0.56,p=0.008389521 CRYGN,FC=0.86,p=1.8e-05 RHEB,FC=0.46,p=0.029236294 RHEB,FC=0.09,p=0.409109702 RHEB,FC=0.54,p=4.83e-07 RHEB,FC=-0.44,p=0.015419401 RHEB,FC=0.61,p=5.22e-16 PRKAG2,FC=0.09,p=0.690269011 PRKAG2,FC=0.34,p=0.059255604 PRKAG2,FC=0.21,p=0.011526843 PRKAG2,FC=0.17,p=0.071580824 PRKAG2,FC=-0.13,p=0.142864281 GALNTL5,FC=0.11,p=0.549450382 GALNT11,FC=-0.23,p=0.019259344 MLL3,FC=0.57,p=4.38e-05 MLL3,FC=1.03,p=2.19e-13 MLL3,FC=-0.16,p=0.030129235 MLL3,FC=0.14,p=0.077028949 MLL3,FC=0.08,p=0.507991327 MLL3,FC=0.64,p=9.9e-05 MLL3,FC=0.50,p=0.016592834 LOC100128822,FC=-0.14,p=0.235882584 XRCC2,FC=0.33,p=0.000276691 ACTR3B,FC=0.04,p=0.783969985 ACTR3B,FC=0.36,p=0.000234958 CACNB4,FC=0.33,p=0.05195317 DPP6,FC=0.13,p=0.430520165 DPP6,FC=-0.26,p=0.158330061 DPP6,FC=-2.20,p=1.87e-21 LOC100132707,FC=-0.85,p=4.45e-08 PAXIP1,FC=0.42,p=1.79e-10 LOC202781,FC=0.31,p=0.000487484 HTR5A,FC=0.06,p=0.703963524 INSIG1,FC=-1.19,p=9.37e-18 INSIG1,FC=-1.35,p=1.44e-26 INSIG1,FC=-0.06,p=0.592939283 EN2,FC=0.81,p=4.94e-05 CNPY1,FC=0.09,p=0.662886184 RBM33,FC=-0.31,p=0.09797999 RBM33,FC=0.05,p=0.400106166 RBM33,FC=0.06,p=0.727060571 RBM33,FC=-0.07,p=0.496918292 RBM33,FC=0.46,p=6.14e-05 RBM33,FC=0.53,p=0.000406411 SHH,FC=-0.47,p=0.00439625

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=-0.24,p=0.269411579 CNTNAP2,FC=2.08,p=1.25e-12 CNTNAP2,FC=2.38,p=2.25e-14 CNTNAP2,FC=2.57,p=4.12e-14 CNTNAP2,FC=2.51,p=9.77e-11 C7orf33,FC=0.22,p=0.158577285 CUL1,FC=-0.49,p=0.000520987 CUL1,FC=0.16,p=0.180286457 CUL1,FC=-0.15,p=0.035959524 EZH2,FC=1.40,p=3.85e-18 EZH2,FC=2.15,p=1.64e-37 PDIA4,FC=1.32,p=5.32e-23 PDIA4,FC=1.42,p=3.09e-28 ZNF786,FC=0.69,p=1.83e-12 ZNF425,FC=0.62,p=0.006069799 ZNF398,FC=0.03,p=0.710396391 ZNF398,FC=0.14,p=0.129904787 ZNF398,FC=0.86,p=1.18e-10 ZNF282,FC=1.01,p=4.75e-18 ZNF212,FC=0.56,p=9.61e-14 ZNF783,FC=0.25,p=0.016689945 ZNF783,FC=0.32,p=0.000184204 ZNF783,FC=0.30,p=0.017417529 ZNF777,FC=-0.29,p=0.217247925 ZNF777,FC=-0.22,p=0.211031944 ZNF777,FC=-0.01,p=0.923609855 ZNF746,FC=1.04,p=4.87e-08 ZNF746,FC=0.14,p=0.098206698 ZNF767,FC=0.65,p=3.1e-07 KRBA1,FC=0.51,p=1.73e-05 ZNF467,FC=-0.09,p=0.431938502 SSPO,FC=-0.26,p=0.097230161 ZNF862,FC=0.02,p=0.853050436 ZNF862,FC=-0.76,p=1.67e-07 ATP6V0E2,FC=0.60,p=5.9e-05 ARP11,FC=-0.61,p=0.000139461 LRRC61,FC=0.97,p=1.66e-09 RARRES2,FC=-1.19,p=5.02e-12 REPIN1,FC=0.00,p=0.994124923 REPIN1,FC=1.02,p=0.000717676 ZNF775,FC=0.29,p=0.003277043 GIMAP8,FC=-2.48,p=1.07e-36 GIMAP8,FC=-1.93,p=7.82e-18 GIMAP7,FC=-2.31,p=4.98e-24 GIMAP4,FC=-2.40,p=3.13e-21 GIMAP6,FC=-3.11,p=3.5e-31 GIMAP6,FC=-2.57,p=3.19e-28 GIMAP2,FC=-2.29,p=3.64e-14 GIMAP1,FC=-1.28,p=9.41e-14 GIMAP1,FC=-2.95,p=1.57e-27 GIMAP1,FC=-2.11,p=1.54e-18 GIMAP5,FC=-0.40,p=0.089843494 GIMAP5,FC=-1.46,p=2.86e-19 GIMAP5,FC=-1.00,p=9.98e-14 TMEM176B,FC=0.03,p=0.844568192 TMEM176B,FC=-0.36,p=0.065771075 TMEM176A,FC=0.18,p=0.206185154 ABP1,FC=0.29,p=0.14168371 S100A11,FC=2.05,p=5.26e-26 KCNH2,FC=-0.98,p=2.54e-06 KCNH2,FC=0.11,p=0.342168572 NOS3,FC=-0.04,p=0.813646108 NOS3,FC=-0.95,p=0.000210318 ATG9B,FC=2.02,p=1.64e-20 ATG9B,FC=0.83,p=8.63e-05 ABCB8,FC=0.33,p=0.204778418 ABCB8,FC=0.23,p=0.01719528 ACCN3,FC=0.38,p=0.059652225 CDK5,FC=0.59,p=0.000244215 SLC4A2,FC=-0.08,p=0.567788021 FASTK,FC=0.94,p=9.74e-11 FASTK,FC=1.23,p=5.32e-23 FASTK,FC=1.30,p=3.13e-21 TMUB1,FC=0.93,p=2.65e-08 AGAP3,FC=-0.16,p=0.066177859 AGAP3,FC=0.92,p=0.000425289 AGAP3,FC=0.01,p=0.974400706 AGAP3,FC=1.71,p=9.31e-20 GBX1,FC=-0.18,p=0.169869241 ASB10,FC=0.05,p=0.786154722 ASB10,FC=1.28,p=1.33e-11 ASB10,FC=-0.01,p=0.97157307 ABCF2,FC=0.35,p=0.029291459 ABCF2,FC=1.01,p=2.28e-22 ABCF2,FC=-0.11,p=0.481123171 ABCF2,FC=-1.69,p=1.01e-11 CHPF2,FC=0.62,p=5.48e-11 CHPF2,FC=0.42,p=7e-06 SMARCD3,FC=-0.55,p=1.65e-07 NUB1,FC=-1.81,p=6.85e-13 NUB1,FC=0.17,p=0.065980438 NUB1,FC=-0.32,p=2.01e-05 WDR86,FC=-1.94,p=9.73e-15 CRYGN,FC=0.07,p=0.743906561 RHEB,FC=-0.02,p=0.944122236 RHEB,FC=0.16,p=0.159377658 RHEB,FC=0.69,p=1.28e-11 RHEB,FC=-1.28,p=1.29e-09 RHEB,FC=0.68,p=3.27e-16 PRKAG2,FC=-0.20,p=0.42995684 PRKAG2,FC=-0.25,p=0.229149748 PRKAG2,FC=-0.24,p=0.017410862 PRKAG2,FC=-0.12,p=0.297371086 PRKAG2,FC=-0.50,p=3.68e-06 GALNTL5,FC=-0.13,p=0.522097174 GALNT11,FC=-0.75,p=5.79e-10 MLL3,FC=0.20,p=0.096916871 MLL3,FC=1.48,p=3.97e-15 MLL3,FC=-0.48,p=1.59e-09 MLL3,FC=0.15,p=0.067658116 MLL3,FC=0.01,p=0.942913118 MLL3,FC=0.66,p=5.43e-05 MLL3,FC=1.41,p=1.88e-09 LOC100128822,FC=-0.51,p=0.000717612 XRCC2,FC=0.69,p=3.76e-11 ACTR3B,FC=-0.16,p=0.238651968 ACTR3B,FC=0.51,p=1.09e-05 CACNB4,FC=0.50,p=0.009768449 DPP6,FC=0.59,p=0.005432344 DPP6,FC=0.20,p=0.276915316 DPP6,FC=-2.69,p=1.21e-22 LOC100132707,FC=-1.39,p=1.45e-14 PAXIP1,FC=0.55,p=9.24e-14 LOC202781,FC=0.50,p=7.04e-05 HTR5A,FC=0.22,p=0.221265292 INSIG1,FC=-0.57,p=3.3e-05 INSIG1,FC=-1.00,p=2.35e-17 INSIG1,FC=0.92,p=7.38e-11 EN2,FC=1.50,p=4.98e-09 CNPY1,FC=0.18,p=0.444288934 RBM33,FC=-0.57,p=0.001792575 RBM33,FC=0.30,p=1.16e-05 RBM33,FC=-0.09,p=0.607986627 RBM33,FC=0.09,p=0.406991092 RBM33,FC=0.71,p=2.78e-08 RBM33,FC=0.99,p=9.41e-08 SHH,FC=-0.63,p=0.001366304


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=0.87,p=0.04561241 CNTNAP2,FC=0.80,p=0.096553951 CNTNAP2,FC=-0.38,p=0.350685956 CNTNAP2,FC=0.43,p=0.339745603 CUL1,FC=0.14,p=0.523907789 ZNF282,FC=0.61,p=0.020705175 ZNF212,FC=0.55,p=0.080068326 ZNF212,FC=1.00,p=0.000191001 RARRES2,FC=-0.03,p=0.951497889 ABP1,FC=1.86,p=0.002850717 KCNH2,FC=-0.21,p=0.486945442 ABCB8,FC=0.16,p=0.621083008 CDK5,FC=0.51,p=0.033546954 SLC4A2,FC=0.68,p=0.02031373 FASTK,FC=1.35,p=1.36e-05 ABCF2,FC=0.21,p=0.457922333 SMARCD3,FC=-0.28,p=0.353542423 PRKAG2,FC=0.08,p=0.838357006 MLL3,FC=0.55,p=0.013824348 MLL3,FC=0.31,p=0.347478891 DPP6,FC=0.04,p=0.854958317 INSIG1,FC=-0.86,p=0.011356638 EN2,FC=0.85,p=0.082777631

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=2.42,p=3.57e-05 CNTNAP2,FC=3.06,p=0.000274346 CNTNAP2,FC=1.37,p=0.035190974 CNTNAP2,FC=2.71,p=0.000723708 CUL1,FC=0.20,p=0.49154256 ZNF282,FC=0.56,p=0.036263531 ZNF212,FC=0.50,p=0.264621617 ZNF212,FC=0.71,p=0.010454381 RARRES2,FC=-0.74,p=0.144383085 ABP1,FC=0.52,p=0.202073605 KCNH2,FC=0.08,p=0.80635497 ABCB8,FC=0.13,p=0.64960938 CDK5,FC=0.54,p=0.043919947 SLC4A2,FC=-0.43,p=0.156442559 FASTK,FC=0.98,p=0.008498401 ABCF2,FC=0.61,p=0.021111939 SMARCD3,FC=-0.43,p=0.326657837 PRKAG2,FC=-0.86,p=0.002815161 MLL3,FC=0.48,p=0.058227889 MLL3,FC=-0.25,p=0.501046037 DPP6,FC=-0.18,p=0.707175478 INSIG1,FC=-0.58,p=0.047846815 EN2,FC=1.20,p=0.019383736


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=0.01,p=0.851396084 CNTNAP2,FC=0.33,p=0.015969096 C7orf33,FC=0.02,p=0.490084321 CUL1,FC=-0.01,p=0.83224332 EZH2,FC=0.40,p=0.000107158 ZNF425,FC=0.05,p=0.266010643 ZNF398,FC=-0.06,p=0.208518572 ZNF398,FC=-0.05,p=0.002436752 ZNF282,FC=-0.14,p=0.013828629 RARRES2,FC=-0.57,p=0.000260344 REPIN1,FC=-0.05,p=0.40931555 GIMAP8,FC=-0.69,p=4.09e-10 GIMAP7,FC=-0.49,p=0.102785902 GIMAP4,FC=0.02,p=0.478251582 GIMAP6,FC=-0.22,p=1.29e-08 GIMAP1,FC=-0.78,p=4.04e-10 GIMAP5,FC=-0.42,p=3.58e-07 ABP1,FC=-0.05,p=0.195120477 KCNH2,FC=-0.20,p=0.114762907 NOS3,FC=0.02,p=0.688446718 ABCB8,FC=0.06,p=0.221089384 ACCN3,FC=0.02,p=0.721619165 CDK5,FC=0.02,p=0.712736533 SLC4A2,FC=-0.07,p=0.127832644 FASTK,FC=0.06,p=0.161110512 ASB10,FC=0.17,p=0.015802485 ABCF2,FC=-0.17,p=1.25e-05 SMARCD3,FC=-0.17,p=0.011460071 CRYGN,FC=-0.02,p=0.358595374 RHEB,FC=0.20,p=2.54e-07 PRKAG2,FC=-0.01,p=0.872466769 GALNTL5,FC=0.06,p=0.166801635 GALNT11,FC=0.16,p=0.02116742 MLL3,FC=0.05,p=0.598737736 MLL3,FC=-0.01,p=0.43671569 MLL3,FC=0.02,p=0.506010913 XRCC2,FC=-0.04,p=0.003464068 HTR5A,FC=0.02,p=0.797474799 INSIG1,FC=-0.12,p=0.044299782 INSIG1,FC=-0.05,p=0.386401877 INSIG1,FC=0.02,p=0.606916633 EN2,FC=0.00,p=0.965765852 SHH,FC=-0.13,p=0.002994824

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      CNTNAP2,FC=0.11,p=0.12998181 CNTNAP2,FC=0.64,p=0.000546401 C7orf33,FC=0.01,p=0.637215285 CUL1,FC=0.04,p=0.457766756 EZH2,FC=0.53,p=1.99e-08 ZNF425,FC=0.06,p=0.091885256 ZNF398,FC=-0.03,p=0.582126142 ZNF398,FC=-0.05,p=0.015930374 ZNF282,FC=-0.10,p=0.099411476 RARRES2,FC=-0.57,p=7.24e-06 REPIN1,FC=-0.12,p=0.059389943 GIMAP8,FC=-0.79,p=2.91e-07 GIMAP7,FC=-0.57,p=0.054527264 GIMAP4,FC=-0.00,p=0.897738744 GIMAP6,FC=-0.26,p=1.45e-11 GIMAP1,FC=-0.83,p=3.23e-11 GIMAP5,FC=-0.52,p=2.13e-08 ABP1,FC=-0.08,p=0.056161395 KCNH2,FC=-0.30,p=0.001294543 NOS3,FC=0.03,p=0.444045292 ABCB8,FC=0.08,p=0.114491698 ACCN3,FC=0.00,p=0.955556747 CDK5,FC=0.02,p=0.644465068 SLC4A2,FC=-0.09,p=0.003752904 FASTK,FC=0.05,p=0.253622616 ASB10,FC=0.18,p=0.008053345 ABCF2,FC=-0.14,p=0.003580427 SMARCD3,FC=-0.28,p=4.79e-08 CRYGN,FC=-0.02,p=0.222970648 RHEB,FC=0.19,p=0.000112523 PRKAG2,FC=-0.03,p=0.370734165 GALNTL5,FC=0.08,p=0.150136988 GALNT11,FC=0.04,p=0.537226623 MLL3,FC=-0.06,p=0.507619425 MLL3,FC=-0.01,p=0.566171418 MLL3,FC=-0.01,p=0.777772896 XRCC2,FC=-0.03,p=0.034239842 HTR5A,FC=-0.02,p=0.817569339 INSIG1,FC=-0.06,p=0.459408264 INSIG1,FC=0.04,p=0.487795312 INSIG1,FC=0.02,p=0.5399408 EN2,FC=0.03,p=0.716894713 SHH,FC=-0.12,p=0.029132482


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

CNTNAP2,FC=-0.00,p=0.983545239 CNTNAP2,FC=-0.66,p=1.37e-06 CNTNAP2,FC=0.34,p=0.090228965 CNTNAP2,FC=0.26,p=0.149276744 CUL1,FC=0.03,p=0.57223438 EZH2,FC=1.61,p=1.06e-24 EZH2,FC=-0.00,p=0.971761995 PDIA4,FC=1.12,p=3.61e-30 PDIA4,FC=0.98,p=7.29e-27 ZNF282,FC=0.02,p=0.772001288 ZNF212,FC=0.44,p=1.81e-13 ZNF783,FC=-0.49,p=8.77e-08 ZNF783,FC=-0.36,p=0.000272384 ZNF783,FC=-0.16,p=0.01954824 ZNF767,FC=-0.18,p=0.019538681 ZNF467,FC=-0.27,p=7.74e-05 ZNF862,FC=-0.29,p=0.033157429 ATP6V0E2,FC=0.36,p=1.32e-05 LRRC61,FC=0.68,p=2.43e-06 RARRES2,FC=-1.04,p=1.73e-12 REPIN1,FC=0.70,p=1.45e-18 GIMAP4,FC=-1.44,p=1.23e-26 GIMAP6,FC=-2.16,p=2.94e-35 GIMAP5,FC=-1.69,p=8.24e-68 GIMAP5,FC=-0.36,p=0.018611338 GIMAP5,FC=-1.81,p=5.72e-64 TMEM176B,FC=0.51,p=8.23e-05 TMEM176A,FC=-0.23,p=0.018948125 ABP1,FC=1.53,p=6.66e-14 S100A11,FC=0.58,p=3.11e-12 KCNH2,FC=-0.40,p=4.96e-05 KCNH2,FC=0.12,p=0.400474775 NOS3,FC=0.73,p=0.00025291 ABCB8,FC=1.52,p=2.72e-15 ACCN3,FC=0.07,p=0.392254856 CDK5,FC=1.19,p=1.99e-16 SLC4A2,FC=0.52,p=3.2e-05 FASTK,FC=2.05,p=2.53e-49 FASTK,FC=0.26,p=8.15e-05 FASTK,FC=1.15,p=1.76e-21 GBX1,FC=-0.29,p=0.000283918 ABCF2,FC=-0.04,p=0.791250301 ABCF2,FC=0.20,p=4.71e-05 ABCF2,FC=-1.21,p=1.15e-10 ABCF2,FC=1.05,p=9.72e-18 CHPF2,FC=0.64,p=4.22e-27 CHPF2,FC=1.05,p=4.14e-21 SMARCD3,FC=-0.16,p=0.041538268 RHEB,FC=0.53,p=1.93e-16 RHEB,FC=2.40,p=6.72e-30 PRKAG2,FC=-0.26,p=3.25e-05 PRKAG2,FC=1.62,p=6.03e-19 GALNT11,FC=-0.02,p=0.772593615 XRCC2,FC=0.31,p=0.004528191 ACTR3B,FC=0.40,p=8e-06 DPP6,FC=-1.49,p=1.76e-35 PAXIP1,FC=0.35,p=1.73e-09 HTR5A,FC=-0.01,p=0.943077097 INSIG1,FC=0.14,p=0.133671043 INSIG1,FC=-0.65,p=1.93e-11 INSIG1,FC=-0.70,p=1.02e-10 EN2,FC=-0.55,p=0.001361276 SHH,FC=0.00,p=0.994638787

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP5-1136G13, 5/50, 0.1 RP5-1136G13, 0/50, 0 RP11-24N19, 26/50, 0.52 RP11-24N19, 1/50, 0.02 RP4-800G7, 10/50, 0.2 RP4-800G7, 1/50, 0.02 RP11-511P7, 11/50, 0.22 RP11-511P7, 2/50, 0.04 RP4-548K24, 18/50, 0.36 RP4-548K24, 3/50, 0.06 RP4-548D19, 15/50, 0.3 RP4-548D19, 1/50, 0.02 RP11-208G20, 8/50, 0.16 RP11-208G20, 15/50, 0.3 RP11-312C1, 12/50, 0.24 RP11-312C1, 1/50, 0.02 RP11-422E4, 5/50, 0.1 RP11-422E4, 1/50, 0.02 RP11-269M19, 11/50, 0.22 RP11-269M19, 1/50, 0.02 RP5-1015O24, 3/50, 0.06 RP5-1015O24, 2/50, 0.04 RP11-69O3, 21/50, 0.42 RP11-69O3, 1/50, 0.02

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D7S636, 3/20, 15% D7S798, 3/16, 19% PMID=10987304 D7S2465, 5/19, 26% D7S3070, 3/13, 23% PMID=15900585 D7S3070, 6/13, 46%

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