IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.55,p=0.000711894 NFIB,FC=0.30,p=0.140472868 NFIB,FC=-0.70,p=4.76e-08 NFIB,FC=-0.79,p=6.03e-09 NFIB,FC=0.06,p=0.600404797 SNAPC3,FC=0.13,p=0.301939833 PSIP1,FC=-0.90,p=0.00048907 PSIP1,FC=-0.81,p=1.01e-10 SH3GL2,FC=-0.41,p=0.080163789 RRAGA,FC=-0.57,p=2.12e-10 RPS6,FC=0.10,p=0.161596013

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.92,p=2.46e-05 NFIB,FC=0.26,p=0.252379049 NFIB,FC=-0.79,p=7.16e-06 NFIB,FC=-0.82,p=6.05e-06 NFIB,FC=0.04,p=0.790208504 SNAPC3,FC=0.30,p=0.136992338 PSIP1,FC=-0.08,p=0.739761433 PSIP1,FC=-0.37,p=0.044476259 SH3GL2,FC=-0.30,p=0.350677652 RRAGA,FC=-0.47,p=0.002265727 RPS6,FC=0.21,p=0.037625855


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-1.03,p=2.02e-29 NFIB,FC=-0.87,p=4.26e-16 NFIB,FC=0.29,p=0.158722401 NFIB,FC=-0.50,p=1.8e-05 NFIB,FC=-0.89,p=9.27e-28 NFIB,FC=-0.57,p=2.23e-07 NFIB,FC=-0.70,p=0.000204633 CER1,FC=-0.22,p=0.000145378 ANKH,FC=0.11,p=0.487976722 SNAPC3,FC=0.48,p=1.88e-10 SNAPC3,FC=-0.05,p=0.349934087 PSIP1,FC=-1.17,p=2.07e-41 PSIP1,FC=0.04,p=0.690290876 PSIP1,FC=-0.68,p=3.12e-10 BNC2,FC=-0.78,p=1.06e-24 CNTLN,FC=-0.74,p=7.58e-09 SH3GL2,FC=-1.75,p=1.67e-24 RRAGA,FC=-0.43,p=1.09e-14 HAUS6,FC=0.51,p=0.001578061 PLIN2,FC=-0.66,p=1.15e-08 DENND4C,FC=-0.34,p=7.26e-05 RPS6,FC=-0.04,p=0.272948424 RPS6,FC=0.02,p=0.484584368 RPS6,FC=0.22,p=1.75e-06 SLC24A2,FC=-0.19,p=0.014688127

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-5.02,p=3.22e-94 NFIB,FC=0.45,p=4.65e-12 NFIB,FC=-1.25,p=2.42e-06 NFIB,FC=-2.39,p=1.81e-38 NFIB,FC=-1.61,p=4.4e-80 NFIB,FC=-3.08,p=3.06e-71 NFIB,FC=1.91,p=1.25e-32 CER1,FC=-6.77,p=2.97e-104 ANKH,FC=-0.27,p=0.133605856 SNAPC3,FC=0.66,p=2.94e-07 SNAPC3,FC=-1.10,p=1e-32 PSIP1,FC=-0.45,p=3.72e-07 PSIP1,FC=0.80,p=1.22e-18 PSIP1,FC=-5.92,p=2.05e-56 BNC2,FC=-1.09,p=2e-20 CNTLN,FC=0.65,p=0.001644033 SH3GL2,FC=1.34,p=1.13e-38 RRAGA,FC=-1.36,p=9.57e-60 HAUS6,FC=5.35,p=1.37e-95 PLIN2,FC=-2.91,p=2.14e-99 DENND4C,FC=-0.76,p=1.43e-27 RPS6,FC=-2.54,p=8.65e-130 RPS6,FC=-11.26,p=2.45e-239 RPS6,FC=-0.86,p=4.16e-60 SLC24A2,FC=-0.91,p=1.42e-14


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.68,p=7.34e-10 NFIB,FC=-0.48,p=1.28e-05 NFIB,FC=-0.81,p=2.83e-05 NFIB,FC=-0.93,p=2.27e-17 NFIB,FC=-0.37,p=0.003026857 NFIB,FC=-0.69,p=0.002390386 NFIB,FC=-1.13,p=9.57e-06 NFIB,FC=-0.09,p=0.703139327 NFIB,FC=-0.56,p=0.000570879 ZDHHC21,FC=0.50,p=0.037077334 ZDHHC21,FC=0.46,p=0.004356994 ZDHHC21,FC=0.35,p=0.114269238 CER1,FC=0.30,p=0.094151102 FREM1,FC=-1.52,p=2.32e-15 ANKH,FC=-0.46,p=0.003498972 TTC39B,FC=0.11,p=0.531945474 TTC39B,FC=-0.22,p=0.090024889 SNAPC3,FC=0.26,p=0.037132635 SNAPC3,FC=0.03,p=0.753966489 METTL6,FC=0.09,p=0.56911496 PSIP1,FC=-0.70,p=2.75e-10 PSIP1,FC=0.01,p=0.937660035 PSIP1,FC=-1.00,p=2.35e-21 PSIP1,FC=0.17,p=0.128863883 C9orf93,FC=-0.20,p=0.176098885 C9orf93,FC=0.12,p=0.55680383 C9orf93,FC=-0.27,p=0.236807897 C9orf93,FC=-0.14,p=0.303209298 C9orf93,FC=-0.51,p=0.009702982 C9orf93,FC=0.18,p=0.260287824 BNC2,FC=-0.25,p=0.080863074 BNC2,FC=-0.57,p=2.13e-08 BNC2,FC=0.12,p=0.539708055 BNC2,FC=-0.51,p=3.91e-06 BNC2,FC=-0.82,p=1.12e-06 BNC2,FC=-0.12,p=0.280237467 QDPR,FC=-0.85,p=4.06e-11 CNTLN,FC=-0.65,p=0.000610058 CNTLN,FC=-0.76,p=0.000108542 CNTLN,FC=-1.27,p=1.7e-13 SH3GL2,FC=-2.10,p=7.9e-18 SH3GL2,FC=-0.43,p=0.025608855 ADAMTSL1,FC=-0.52,p=0.008106825 ADAMTSL1,FC=0.36,p=0.123690097 ADAMTSL1,FC=-0.55,p=0.001185413 ADAMTSL1,FC=0.57,p=0.002033339 ADAMTSL1,FC=-0.78,p=8.86e-06 ADAMTSL1,FC=-0.06,p=0.696392787 FAM154A,FC=0.46,p=0.005174971 RRAGA,FC=-0.33,p=3.31e-08 HAUS6,FC=0.25,p=0.060440673 HAUS6,FC=0.40,p=0.003404339 HAUS6,FC=-0.17,p=0.19657966 PLIN2,FC=-0.61,p=1.78e-05 DENND4C,FC=-0.71,p=2.44e-14 DENND4C,FC=-0.44,p=4.7e-09 DENND4C,FC=-0.65,p=9.85e-08 RPS6,FC=-0.64,p=1.71e-07 RPS6,FC=-0.05,p=0.111267543 RPS6,FC=-0.04,p=0.455560399 RPS6,FC=0.03,p=0.469752892 ZMYM2,FC=-0.06,p=0.513408539 SLC24A2,FC=0.64,p=0.000956471

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.97,p=7.6e-16 NFIB,FC=-0.67,p=1.03e-08 NFIB,FC=-0.85,p=2.04e-06 NFIB,FC=-1.23,p=2.87e-21 NFIB,FC=-0.81,p=9.68e-09 NFIB,FC=-1.35,p=5.19e-07 NFIB,FC=-2.00,p=1.75e-12 NFIB,FC=-1.52,p=3.33e-10 NFIB,FC=-1.41,p=2.68e-15 ZDHHC21,FC=0.47,p=0.050923054 ZDHHC21,FC=-0.46,p=0.006442004 ZDHHC21,FC=-0.17,p=0.530051626 CER1,FC=1.13,p=5.54e-10 FREM1,FC=-1.79,p=1.96e-18 ANKH,FC=-0.51,p=0.002120269 TTC39B,FC=-0.41,p=0.035659829 TTC39B,FC=-0.00,p=0.989733303 SNAPC3,FC=0.04,p=0.765849903 SNAPC3,FC=0.16,p=0.166400981 METTL6,FC=0.34,p=0.052279079 PSIP1,FC=-0.82,p=3.81e-07 PSIP1,FC=-0.27,p=0.143646885 PSIP1,FC=-1.21,p=7.73e-15 PSIP1,FC=0.08,p=0.559123607 C9orf93,FC=-0.44,p=0.011312055 C9orf93,FC=0.19,p=0.422494113 C9orf93,FC=-0.34,p=0.18282545 C9orf93,FC=0.04,p=0.816098791 C9orf93,FC=-0.35,p=0.099217827 C9orf93,FC=0.24,p=0.225006251 BNC2,FC=-0.19,p=0.24088346 BNC2,FC=-0.66,p=6.2e-08 BNC2,FC=0.94,p=5.35e-07 BNC2,FC=-0.46,p=8.93e-06 BNC2,FC=-0.75,p=7.8e-05 BNC2,FC=0.18,p=0.075156844 QDPR,FC=-0.83,p=2.1e-12 CNTLN,FC=-0.07,p=0.720080594 CNTLN,FC=-0.44,p=0.022139388 CNTLN,FC=-1.10,p=6.51e-12 SH3GL2,FC=-2.32,p=6.54e-17 SH3GL2,FC=-0.11,p=0.559476562 ADAMTSL1,FC=-0.70,p=0.003191926 ADAMTSL1,FC=0.85,p=0.001782105 ADAMTSL1,FC=-0.05,p=0.777516468 ADAMTSL1,FC=0.71,p=0.000735659 ADAMTSL1,FC=-0.73,p=0.000321813 ADAMTSL1,FC=0.23,p=0.181447464 FAM154A,FC=0.36,p=0.041207507 RRAGA,FC=-0.36,p=9.63e-08 HAUS6,FC=0.69,p=2.25e-08 HAUS6,FC=0.58,p=0.00064962 HAUS6,FC=0.06,p=0.699811783 PLIN2,FC=-1.38,p=8.17e-13 DENND4C,FC=-0.97,p=5.41e-19 DENND4C,FC=-0.93,p=1.1e-21 DENND4C,FC=-0.57,p=3.64e-05 RPS6,FC=-0.89,p=8.11e-10 RPS6,FC=-0.07,p=0.083160983 RPS6,FC=-0.19,p=0.001846206 RPS6,FC=0.09,p=0.040139465 ZMYM2,FC=-0.18,p=0.034912568 SLC24A2,FC=1.38,p=3.58e-09


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.36,p=0.471654462 ANKH,FC=-0.08,p=0.833757351 ANKH,FC=-0.17,p=0.718586977 ANKH,FC=-0.03,p=0.944753145 ANKH,FC=0.06,p=0.848119638 ANKH,FC=0.33,p=0.272351859 ANKH,FC=0.11,p=0.741146483 ANKH,FC=0.19,p=0.462851651 SNAPC3,FC=0.86,p=0.009130863 PSIP1,FC=-0.15,p=0.541711478 SH3GL2,FC=-1.07,p=0.00811522 RPS6,FC=0.27,p=0.396860946 RPS6,FC=0.52,p=0.299918863 RPS6,FC=0.76,p=0.048443845 RPS6,FC=-0.39,p=0.396946173

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.66,p=0.072629984 ANKH,FC=0.27,p=0.590929458 ANKH,FC=0.53,p=0.367600454 ANKH,FC=1.02,p=0.036833406 ANKH,FC=0.38,p=0.241338839 ANKH,FC=0.75,p=0.040461623 ANKH,FC=0.21,p=0.564539606 ANKH,FC=0.25,p=0.447703084 SNAPC3,FC=0.55,p=0.037552968 PSIP1,FC=0.08,p=0.773304164 SH3GL2,FC=-1.11,p=0.069836553 RPS6,FC=-0.01,p=0.962589775 RPS6,FC=0.44,p=0.379624562 RPS6,FC=0.02,p=0.957598406 RPS6,FC=-0.95,p=0.046404196


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.09,p=0.327704354 CER1,FC=0.04,p=0.462957191 SNAPC3,FC=-0.07,p=0.089637841 PSIP1,FC=0.01,p=0.70863206 PSIP1,FC=-0.03,p=0.772109488 BNC2,FC=0.02,p=0.587862226 SH3GL2,FC=-0.00,p=0.915429454 ADAMTSL1,FC=0.05,p=0.106538891 RRAGA,FC=-0.23,p=0.000111296 RPS6,FC=0.32,p=0.000130242 SLC24A2,FC=0.04,p=0.013416684

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NFIB,FC=-0.29,p=0.000186133 CER1,FC=0.03,p=0.477375356 SNAPC3,FC=-0.04,p=0.264360928 PSIP1,FC=-0.00,p=0.996630467 PSIP1,FC=0.01,p=0.901431497 BNC2,FC=0.02,p=0.505952519 SH3GL2,FC=-0.03,p=0.138699129 ADAMTSL1,FC=0.04,p=0.13785768 RRAGA,FC=-0.25,p=0.000155296 RPS6,FC=0.29,p=7.73e-05 SLC24A2,FC=0.04,p=0.216961529


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

NFIB,FC=-0.99,p=5.03e-30 NFIB,FC=-0.58,p=2.59e-11 NFIB,FC=1.08,p=2.17e-08 NFIB,FC=-0.54,p=2.63e-06 NFIB,FC=-0.89,p=1.71e-28 NFIB,FC=-0.15,p=0.060620849 NFIB,FC=0.07,p=0.74300681 CER1,FC=-0.43,p=1.4e-10 ANKH,FC=0.29,p=0.114824286 SNAPC3,FC=0.68,p=1.27e-16 SNAPC3,FC=0.07,p=0.24772476 PSIP1,FC=-1.11,p=3.46e-45 PSIP1,FC=0.09,p=0.319517927 PSIP1,FC=-0.60,p=4.01e-13 BNC2,FC=-0.85,p=8.9e-28 CNTLN,FC=-1.00,p=2.57e-12 SH3GL2,FC=-1.83,p=1.46e-24 RRAGA,FC=-0.46,p=6.66e-16 HAUS6,FC=1.23,p=3.35e-11 PLIN2,FC=-1.14,p=1.25e-22 DENND4C,FC=-0.27,p=0.000299128 RPS6,FC=0.10,p=0.001073918 RPS6,FC=0.14,p=1.44e-08 RPS6,FC=0.30,p=1.23e-13 SLC24A2,FC=-0.56,p=4.27e-07

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-408A13, 1/50, 0.02 RP11-408A13, 17/50, 0.34 RP11-490C5, 1/50, 0.02 RP11-490C5, 7/50, 0.14 RP11-109M15, 2/50, 0.04 RP11-109M15, 21/50, 0.42 RP11-132E11, 1/50, 0.02 RP11-132E11, 3/50, 0.06 RP11-123J20, 1/50, 0.02 RP11-123J20, 18/50, 0.36 RP11-503K16, 2/50, 0.04 RP11-503K16, 13/50, 0.26 RP11-513M16, 1/50, 0.02 RP11-513M16, 6/50, 0.12

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12599234 PMID=14970871 PMID=15983384

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D9S285, 13/17, 76% PMID=10987304 D9S157, 13/17, 76% D9S925, 5/24, 21% PMID=15900585 D9S925, 13/27, 48%

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