IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , PTPRD, 4.76%, 9/189 PINX1, 0.53%, 1/189

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.14,p=0.399620167 PTPRD,FC=-1.78,p=6.21e-09 PTPRD,FC=-1.25,p=1.83e-10 TYRP1,FC=-0.54,p=0.015567628 MPDZ,FC=-0.83,p=0.001064717 NFIB,FC=-0.55,p=0.000711894 NFIB,FC=-0.79,p=6.03e-09 NFIB,FC=-0.70,p=4.76e-08 NFIB,FC=0.30,p=0.140472868 NFIB,FC=0.06,p=0.600404797

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.15,p=0.608918965 PTPRD,FC=-1.04,p=0.000706596 PTPRD,FC=-0.88,p=0.001282086 TYRP1,FC=-0.51,p=0.107356493 MPDZ,FC=-1.04,p=0.00122274 NFIB,FC=-0.92,p=2.46e-05 NFIB,FC=-0.82,p=6.05e-06 NFIB,FC=-0.79,p=7.16e-06 NFIB,FC=0.26,p=0.252379049 NFIB,FC=0.04,p=0.790208504


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.30,p=0.038530728 PTPRD,FC=-0.61,p=1.8e-08 PTPRD,FC=-1.73,p=3.28e-35 PTPRD,FC=-1.42,p=8.36e-44 TYRP1,FC=-1.13,p=1.32e-18 MPDZ,FC=-1.33,p=8.01e-25 MPDZ,FC=-0.90,p=5.87e-30 NFIB,FC=-0.50,p=1.8e-05 NFIB,FC=-0.57,p=2.23e-07 NFIB,FC=-0.70,p=0.000204633 NFIB,FC=0.29,p=0.158722401 NFIB,FC=-0.87,p=4.26e-16 NFIB,FC=-1.03,p=2.02e-29 NFIB,FC=-0.89,p=9.27e-28

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-1.66,p=3.5e-16 PTPRD,FC=1.61,p=1.92e-33 PTPRD,FC=-0.52,p=1.55e-10 PTPRD,FC=1.49,p=6.3e-47 TYRP1,FC=-3.06,p=2.32e-70 MPDZ,FC=-0.80,p=4.16e-17 MPDZ,FC=-5.24,p=5.59e-93 NFIB,FC=-2.39,p=1.81e-38 NFIB,FC=-3.08,p=3.06e-71 NFIB,FC=1.91,p=1.25e-32 NFIB,FC=-1.25,p=2.42e-06 NFIB,FC=0.45,p=4.65e-12 NFIB,FC=-5.02,p=3.22e-94 NFIB,FC=-1.61,p=4.4e-80


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.37,p=0.117275569 PTPRD,FC=-0.39,p=0.03193213 PTPRD,FC=-1.82,p=2.3e-20 PTPRD,FC=-1.86,p=5.18e-23 PTPRD,FC=0.51,p=0.036267391 PTPRD,FC=0.09,p=0.617390899 PTPRD,FC=0.78,p=0.000571608 TYRP1,FC=-1.82,p=4.05e-20 C9orf150,FC=-1.10,p=7.08e-14 C9orf150,FC=-0.18,p=0.068220618 MPDZ,FC=-1.15,p=2.81e-13 MPDZ,FC=-0.70,p=2.32e-10 NFIB,FC=-1.13,p=9.57e-06 NFIB,FC=-0.56,p=0.000570879 NFIB,FC=-0.68,p=7.34e-10 NFIB,FC=-0.69,p=0.002390386 NFIB,FC=-0.93,p=2.27e-17 NFIB,FC=-0.81,p=2.83e-05 NFIB,FC=-0.09,p=0.703139327 NFIB,FC=-0.48,p=1.28e-05 NFIB,FC=-0.37,p=0.003026857

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.02,p=0.924430488 PTPRD,FC=-0.44,p=0.023955157 PTPRD,FC=-1.38,p=5.62e-09 PTPRD,FC=-1.35,p=2.75e-08 PTPRD,FC=0.36,p=0.201085823 PTPRD,FC=0.81,p=0.000182925 PTPRD,FC=0.55,p=0.026463767 TYRP1,FC=-1.90,p=1.37e-21 C9orf150,FC=-1.79,p=3.84e-21 C9orf150,FC=-0.61,p=7.97e-07 MPDZ,FC=-1.52,p=2.28e-13 MPDZ,FC=-0.68,p=4.19e-12 NFIB,FC=-2.00,p=1.75e-12 NFIB,FC=-1.41,p=2.68e-15 NFIB,FC=-0.97,p=7.6e-16 NFIB,FC=-1.35,p=5.19e-07 NFIB,FC=-1.23,p=2.87e-21 NFIB,FC=-0.85,p=2.04e-06 NFIB,FC=-1.52,p=3.33e-10 NFIB,FC=-0.67,p=1.03e-08 NFIB,FC=-0.81,p=9.68e-09


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.54,p=0.101122569 TYRP1,FC=-2.27,p=2.88e-05 MPDZ,FC=-0.28,p=0.521087443 NFIB,FC=-0.36,p=0.471654462

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=0.02,p=0.94340179 TYRP1,FC=-1.96,p=0.008087804 MPDZ,FC=-0.19,p=0.613966473 NFIB,FC=-0.66,p=0.072629984


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.05,p=0.123954321 TYRP1,FC=-0.02,p=0.216991645 TYRP1,FC=-0.31,p=7.43e-05 C9orf150,FC=-0.05,p=0.488901004 MPDZ,FC=-0.05,p=0.424783195 NFIB,FC=-0.09,p=0.327704354

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PTPRD,FC=-0.01,p=0.863603151 TYRP1,FC=-0.03,p=0.15219289 TYRP1,FC=-0.40,p=1.83e-09 C9orf150,FC=-0.15,p=0.036290743 MPDZ,FC=-0.12,p=0.010444741 NFIB,FC=-0.29,p=0.000186133


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PTPRD,FC=-0.29,p=0.082850093 PTPRD,FC=-0.86,p=3.88e-11 PTPRD,FC=-1.61,p=7.86e-33 PTPRD,FC=-1.45,p=3.69e-32 TYRP1,FC=-0.81,p=5.33e-08 MPDZ,FC=-1.19,p=5.51e-20 MPDZ,FC=-0.79,p=3.61e-19 NFIB,FC=-0.54,p=2.63e-06 NFIB,FC=-0.15,p=0.060620849 NFIB,FC=0.07,p=0.74300681 NFIB,FC=1.08,p=2.17e-08 NFIB,FC=-0.58,p=2.59e-11 NFIB,FC=-0.99,p=5.03e-30 NFIB,FC=-0.89,p=1.71e-28

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-527D15, 1/50, 0.02 RP11-527D15, 15/50, 0.3 RP11-19G1, 0/50, 0 RP11-19G1, 11/50, 0.22 RP11-23D5, 0/50, 0 RP11-23D5, 13/50, 0.26 RP11-352F21, 0/50, 0 RP11-352F21, 13/50, 0.26 RP11-446F13, 0/50, 0 RP11-446F13, 19/50, 0.38 RP11-187K14, 2/50, 0.04 RP11-187K14, 9/50, 0.18 RP11-413D24, 2/50, 0.04 RP11-413D24, 24/50, 0.48

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12599234 PMID=14970871 PMID=15093586

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S921, 12/22, 55% Our unpublished data D9S269, 14/31, 45% PMID=11980668 D9S254, 22/31, 71%

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