IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.09,p=0.517205014

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.26,p=0.138096912


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSMD12,FC=-0.07,p=0.181020336 PGM5,FC=-0.33,p=0.001128836

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSMD12,FC=3.23,p=3.16e-132 PGM5,FC=-1.68,p=2.96e-43


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      LOC400931,FC=-0.19,p=0.244377256 FBXO9,FC=0.37,p=0.103961414 TEAD2,FC=0.34,p=0.070036904 PSMD12,FC=-0.24,p=0.003164727 ANKRD20A1,FC=-1.80,p=1.24e-27 RAB3IP,FC=0.16,p=0.440261666 PGM5,FC=0.60,p=0.009107455 PGM5,FC=-1.51,p=1.47e-16 PGM5,FC=-2.18,p=3.32e-28

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      LOC400931,FC=-0.03,p=0.84731334 FBXO9,FC=0.66,p=0.012786005 TEAD2,FC=1.13,p=1.6e-07 PSMD12,FC=-0.69,p=3.29e-12 ANKRD20A1,FC=-1.37,p=1.79e-14 RAB3IP,FC=0.43,p=0.043256348 PGM5,FC=1.01,p=0.000186231 PGM5,FC=-2.25,p=4.75e-30 PGM5,FC=-3.17,p=2.33e-35


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.34,p=0.511751073

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.24,p=0.434265716


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.03,p=0.672688681

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.02,p=0.692605342


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PSMD12,FC=-0.06,p=0.214179192 PGM5,FC=0.01,p=0.953659074

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

, 0/50, 0 , 50/50, 1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=11748636 PMID=12599234 PMID=14581340 PMID=15093586

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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