IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.09,p=0.517205014 PIP5K1B,FC=-1.58,p=1.89e-16 PRKACG,FC=0.37,p=0.001384341 FXN,FC=0.13,p=0.313473562 FXN,FC=0.31,p=0.125076169 TJP2,FC=-0.99,p=8.34e-09

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.26,p=0.138096912 PIP5K1B,FC=-1.58,p=3.41e-11 PRKACG,FC=0.26,p=0.087001889 FXN,FC=0.48,p=0.010344641 FXN,FC=0.50,p=0.086622898 TJP2,FC=-0.77,p=3.21e-05


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSMD12,FC=-0.07,p=0.181020336 PGM5,FC=-0.33,p=0.001128836 PIP5K1B,FC=-1.64,p=2.58e-64 PRKACG,FC=0.21,p=0.111714919 FXN,FC=0.26,p=0.000120835 TJP2,FC=-0.88,p=3.73e-23

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSMD12,FC=3.23,p=3.16e-132 PGM5,FC=-1.68,p=2.96e-43 PIP5K1B,FC=-4.89,p=1.72e-105 PRKACG,FC=3.83,p=1.38e-85 FXN,FC=-0.31,p=0.011372778 TJP2,FC=1.65,p=2.1e-77


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSMD12,FC=-0.24,p=0.003164727 ANKRD20A1,FC=-1.80,p=1.24e-27 RAB3IP,FC=0.16,p=0.440261666 PGM5,FC=0.60,p=0.009107455 PGM5,FC=-2.18,p=3.32e-28 PGM5,FC=-1.51,p=1.47e-16 C9orf71,FC=0.24,p=0.211444227 TAF1,FC=0.23,p=0.008450303 PIP5K1B,FC=-0.94,p=1.17e-08 PIP5K1B,FC=-1.87,p=9.59e-36 PRKACG,FC=0.29,p=0.090718615 FXN,FC=0.15,p=0.043090877 TJP2,FC=-1.07,p=2.39e-20 TJP2,FC=-1.39,p=8.22e-13 TJP2,FC=-0.24,p=0.210667371

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PSMD12,FC=-0.69,p=3.29e-12 ANKRD20A1,FC=-1.37,p=1.79e-14 RAB3IP,FC=0.43,p=0.043256348 PGM5,FC=1.01,p=0.000186231 PGM5,FC=-3.17,p=2.33e-35 PGM5,FC=-2.25,p=4.75e-30 C9orf71,FC=0.95,p=6.55e-07 TAF1,FC=0.60,p=5.16e-11 PIP5K1B,FC=-0.72,p=1.38e-07 PIP5K1B,FC=-2.15,p=3.26e-43 PRKACG,FC=0.41,p=0.048410256 FXN,FC=0.32,p=0.000840849 TJP2,FC=-1.32,p=1.08e-18 TJP2,FC=-1.68,p=9.9e-13 TJP2,FC=-0.36,p=0.098748737


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.34,p=0.511751073 PIP5K1B,FC=-0.65,p=0.164525059 PIP5K1B,FC=-0.11,p=0.77893495 TJP2,FC=0.12,p=0.720254021

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.24,p=0.434265716 PIP5K1B,FC=-0.28,p=0.659566684 PIP5K1B,FC=-0.47,p=0.268147648 TJP2,FC=0.02,p=0.956311059


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.03,p=0.672688681 PIP5K1B,FC=0.09,p=0.247565134 PRKACG,FC=0.07,p=0.035807523 FXN,FC=-0.00,p=0.996353842 TJP2,FC=-0.09,p=0.07764363

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.02,p=0.692605342 PIP5K1B,FC=0.07,p=0.370913242 PRKACG,FC=0.04,p=0.265882283 FXN,FC=0.04,p=0.620011839 TJP2,FC=-0.07,p=0.294976317


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PSMD12,FC=-0.06,p=0.214179192 PGM5,FC=0.01,p=0.953659074 PIP5K1B,FC=-1.81,p=2.3e-51 PRKACG,FC=0.09,p=0.514856253 FXN,FC=0.20,p=0.008516107 TJP2,FC=-0.74,p=3.26e-17

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-274B18, 5/50, 0.1 RP11-274B18, 3/50, 0.06 RP11-265B8, 4/50, 0.08 RP11-265B8, 0/50, 0

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636 PMID=15093586

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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