IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.09,p=0.517205014 PIP5K1B,FC=-1.58,p=1.89e-16 PRKACG,FC=0.37,p=0.001384341 FXN,FC=0.31,p=0.125076169 FXN,FC=0.13,p=0.313473562 TJP2,FC=-0.99,p=8.34e-09 APBA1,FC=-0.23,p=0.253294527 SMC5,FC=-0.25,p=0.005371265 KLF9,FC=-1.45,p=3.2e-26 ZFAND5,FC=0.01,p=0.857112899 ALDH1A1,FC=-1.43,p=6.17e-08 ANXA1,FC=-1.06,p=3.28e-07

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.26,p=0.138096912 PIP5K1B,FC=-1.58,p=3.41e-11 PRKACG,FC=0.26,p=0.087001889 FXN,FC=0.50,p=0.086622898 FXN,FC=0.48,p=0.010344641 TJP2,FC=-0.77,p=3.21e-05 APBA1,FC=0.01,p=0.979204604 SMC5,FC=-0.11,p=0.331786477 KLF9,FC=-1.93,p=1.36e-21 ZFAND5,FC=-0.00,p=0.978271509 ALDH1A1,FC=-0.90,p=0.001236845 ANXA1,FC=-0.64,p=0.004219359


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.33,p=0.001128836 PIP5K1B,FC=-1.64,p=2.58e-64 PRKACG,FC=0.21,p=0.111714919 FXN,FC=0.26,p=0.000120835 TJP2,FC=-0.88,p=3.73e-23 FAM189A2,FC=-1.61,p=9.79e-84 APBA1,FC=-0.30,p=0.015616533 SMC5,FC=-0.21,p=0.024252527 SMC5,FC=-0.15,p=0.112204568 KLF9,FC=-1.38,p=1.15e-26 KLF9,FC=-1.33,p=9.85e-44 KLF9,FC=-0.22,p=0.017713103 TRPM3,FC=-0.35,p=2.88e-06 TRPM3,FC=-0.45,p=1.06e-09 TRPM3,FC=-0.55,p=3.68e-07 TMEM2,FC=-0.61,p=2.37e-20 FAM108B1,FC=0.49,p=3.85e-10 ZFAND5,FC=-0.39,p=6.23e-11 ZFAND5,FC=-0.12,p=0.443772096 ZFAND5,FC=0.16,p=0.028960411 ALDH1A1,FC=-1.26,p=6.5e-12 ANXA1,FC=-1.29,p=6.06e-19

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-1.68,p=2.96e-43 PIP5K1B,FC=-4.89,p=1.72e-105 PRKACG,FC=3.83,p=1.38e-85 FXN,FC=-0.31,p=0.011372778 TJP2,FC=1.65,p=2.1e-77 FAM189A2,FC=-1.20,p=5.69e-28 APBA1,FC=2.55,p=1.94e-73 SMC5,FC=3.02,p=5.85e-89 SMC5,FC=0.93,p=5.97e-14 KLF9,FC=-4.04,p=1.83e-65 KLF9,FC=-6.44,p=3.39e-110 KLF9,FC=-1.68,p=2.93e-37 TRPM3,FC=0.21,p=0.075788141 TRPM3,FC=0.40,p=1.29e-07 TRPM3,FC=1.21,p=1.28e-28 TMEM2,FC=-5.87,p=2.74e-117 FAM108B1,FC=0.44,p=0.000310926 ZFAND5,FC=-3.65,p=1.29e-68 ZFAND5,FC=3.33,p=4.16e-61 ZFAND5,FC=-4.02,p=3.66e-83 ALDH1A1,FC=-4.37,p=1.59e-82 ANXA1,FC=-3.57,p=1.93e-117


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ANKRD20A1,FC=-1.80,p=1.24e-27 RAB3IP,FC=0.16,p=0.440261666 PGM5,FC=-1.51,p=1.47e-16 PGM5,FC=-2.18,p=3.32e-28 PGM5,FC=0.60,p=0.009107455 C9orf71,FC=0.24,p=0.211444227 TAF1,FC=0.23,p=0.008450303 PIP5K1B,FC=-1.87,p=9.59e-36 PIP5K1B,FC=-0.94,p=1.17e-08 PRKACG,FC=0.29,p=0.090718615 FXN,FC=0.15,p=0.043090877 TJP2,FC=-0.24,p=0.210667371 TJP2,FC=-1.07,p=2.39e-20 TJP2,FC=-1.39,p=8.22e-13 FAM189A2,FC=-2.19,p=1.99e-40 APBA1,FC=0.32,p=0.029289613 PTAR1,FC=0.18,p=0.013057332 PTAR1,FC=-0.22,p=0.003959781 PTAR1,FC=0.49,p=0.001002833 C9orf135,FC=-0.41,p=0.09232756 C9orf135,FC=-1.44,p=3.84e-11 MAMDC2,FC=-3.48,p=8.48e-48 SMC5,FC=-0.39,p=0.026263447 SMC5,FC=-0.65,p=5.71e-12 SMC5,FC=-0.55,p=2.41e-08 KLF9,FC=-1.77,p=7.04e-27 KLF9,FC=-1.18,p=9.59e-22 KLF9,FC=0.28,p=0.133568947 TRPM3,FC=0.59,p=0.005189572 TRPM3,FC=-0.36,p=0.043395254 TRPM3,FC=0.18,p=0.240965943 TRPM3,FC=0.14,p=0.441081044 TRPM3,FC=0.41,p=0.027885022 TRPM3,FC=-0.17,p=0.371950187 TRPM3,FC=0.67,p=9.52e-05 TMEM2,FC=-0.57,p=2.35e-07 TMEM2,FC=-1.56,p=7.09e-14 FAM108B1,FC=-0.47,p=2.32e-08 FAM108B1,FC=0.06,p=0.650643926 C9orf85,FC=-0.40,p=0.006363107 C9orf85,FC=-0.17,p=0.154200188 C9orf57,FC=0.70,p=0.000805902 GDA,FC=1.13,p=1.81e-06 ZFAND5,FC=-0.64,p=0.000252346 ZFAND5,FC=-0.12,p=0.154235594 ZFAND5,FC=-0.48,p=8.99e-13 TMC1,FC=-0.53,p=0.004050741 ALDH1A1,FC=-1.73,p=6.78e-14 ANXA1,FC=-1.18,p=1.63e-14 ANXA1,FC=-1.20,p=2.17e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ANKRD20A1,FC=-1.37,p=1.79e-14 RAB3IP,FC=0.43,p=0.043256348 PGM5,FC=-2.25,p=4.75e-30 PGM5,FC=-3.17,p=2.33e-35 PGM5,FC=1.01,p=0.000186231 C9orf71,FC=0.95,p=6.55e-07 TAF1,FC=0.60,p=5.16e-11 PIP5K1B,FC=-2.15,p=3.26e-43 PIP5K1B,FC=-0.72,p=1.38e-07 PRKACG,FC=0.41,p=0.048410256 FXN,FC=0.32,p=0.000840849 TJP2,FC=-0.36,p=0.098748737 TJP2,FC=-1.32,p=1.08e-18 TJP2,FC=-1.68,p=9.9e-13 FAM189A2,FC=-2.48,p=4.85e-41 APBA1,FC=0.38,p=0.033229472 PTAR1,FC=-0.12,p=0.154631568 PTAR1,FC=-0.41,p=6.62e-09 PTAR1,FC=-0.05,p=0.839573413 C9orf135,FC=-1.25,p=4.98e-07 C9orf135,FC=-2.14,p=6.2e-25 MAMDC2,FC=-4.36,p=1.86e-52 SMC5,FC=-0.65,p=0.000746648 SMC5,FC=-0.77,p=2.62e-09 SMC5,FC=-0.49,p=8.14e-05 KLF9,FC=-2.39,p=7.94e-22 KLF9,FC=-1.53,p=2.98e-15 KLF9,FC=0.58,p=0.005170679 TRPM3,FC=1.15,p=3.98e-06 TRPM3,FC=-0.14,p=0.480288485 TRPM3,FC=0.27,p=0.107019998 TRPM3,FC=0.07,p=0.762374089 TRPM3,FC=0.73,p=0.000613424 TRPM3,FC=0.51,p=0.005843727 TRPM3,FC=1.20,p=4.16e-10 TMEM2,FC=-0.82,p=9.72e-11 TMEM2,FC=-2.78,p=8.68e-27 FAM108B1,FC=-0.25,p=0.007399471 FAM108B1,FC=0.21,p=0.157987057 C9orf85,FC=-0.53,p=0.003820389 C9orf85,FC=0.02,p=0.87383003 C9orf57,FC=1.30,p=2.73e-08 GDA,FC=3.47,p=3.41e-29 ZFAND5,FC=-1.36,p=1.6e-12 ZFAND5,FC=0.02,p=0.841494015 ZFAND5,FC=-0.44,p=1.36e-09 TMC1,FC=-0.77,p=0.000605877 ALDH1A1,FC=-0.81,p=0.001332394 ANXA1,FC=-0.58,p=3.89e-05 ANXA1,FC=-1.17,p=0.000137422


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=-0.34,p=0.511751073 PIP5K1B,FC=-0.65,p=0.164525059 PIP5K1B,FC=-0.11,p=0.77893495 TJP2,FC=0.12,p=0.720254021 APBA1,FC=0.62,p=0.193850307 TMEM2,FC=0.01,p=0.966812984 ALDH1A1,FC=-1.30,p=0.072261108 ANXA1,FC=-0.97,p=0.026033637

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.24,p=0.434265716 PIP5K1B,FC=-0.28,p=0.659566684 PIP5K1B,FC=-0.47,p=0.268147648 TJP2,FC=0.02,p=0.956311059 APBA1,FC=0.72,p=0.055702218 TMEM2,FC=-0.70,p=0.025557134 ALDH1A1,FC=-0.17,p=0.793037869 ANXA1,FC=-0.21,p=0.650099183


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.03,p=0.672688681 PIP5K1B,FC=0.09,p=0.247565134 PRKACG,FC=0.07,p=0.035807523 FXN,FC=-0.00,p=0.996353842 TJP2,FC=-0.09,p=0.07764363 APBA1,FC=-0.01,p=0.545378794 APBA1,FC=0.06,p=0.111390225 MAMDC2,FC=-0.65,p=1.28e-08 TRPM3,FC=-0.03,p=0.540390915 TMEM2,FC=-0.21,p=0.00130176 C9orf85,FC=0.14,p=2.54e-05 TMC1,FC=0.08,p=0.425054384 ALDH1A1,FC=-0.40,p=0.016389648 ANXA1,FC=-0.09,p=0.501376336

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PGM5,FC=0.02,p=0.692605342 PIP5K1B,FC=0.07,p=0.370913242 PRKACG,FC=0.04,p=0.265882283 FXN,FC=0.04,p=0.620011839 TJP2,FC=-0.07,p=0.294976317 APBA1,FC=-0.02,p=0.269562381 APBA1,FC=0.07,p=0.057018828 MAMDC2,FC=-0.79,p=6.53e-12 TRPM3,FC=0.01,p=0.893054728 TMEM2,FC=-0.38,p=3.22e-07 C9orf85,FC=0.20,p=1.9e-05 TMC1,FC=0.04,p=0.748210375 ALDH1A1,FC=0.04,p=0.848850484 ANXA1,FC=0.09,p=0.45264029


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-204,Mean=0.01

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-204,Mean=0.15

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PGM5,FC=0.01,p=0.953659074 PIP5K1B,FC=-1.81,p=2.3e-51 PRKACG,FC=0.09,p=0.514856253 FXN,FC=0.20,p=0.008516107 TJP2,FC=-0.74,p=3.26e-17 FAM189A2,FC=-1.78,p=1.63e-52 APBA1,FC=-0.01,p=0.961981079 SMC5,FC=-0.11,p=0.125772005 SMC5,FC=0.28,p=0.005273205 KLF9,FC=-1.09,p=9.43e-19 KLF9,FC=-0.86,p=3.43e-16 KLF9,FC=-0.24,p=0.012745877 TRPM3,FC=-0.71,p=8.08e-10 TRPM3,FC=-0.98,p=5.53e-17 TRPM3,FC=-0.74,p=5.87e-09 TMEM2,FC=-0.63,p=1.41e-19 FAM108B1,FC=0.55,p=9.33e-11 ZFAND5,FC=-0.38,p=6.41e-11 ZFAND5,FC=0.38,p=0.012078507 ZFAND5,FC=0.39,p=4.11e-07 ALDH1A1,FC=-1.01,p=1.05e-08 ANXA1,FC=-1.04,p=2.21e-18

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-274B18, 5/50, 0.1 RP11-274B18, 3/50, 0.06 RP11-265B8, 4/50, 0.08 RP11-265B8, 0/50, 0 RP11-109D9, 2/50, 0.04 RP11-109D9, 3/50, 0.06 RP11-141J10, 2/50, 0.04 RP11-141J10, 3/50, 0.06 RP11-563H8, 2/50, 0.04 RP11-563H8, 4/50, 0.08 RP11-429L21, 3/50, 0.06 RP11-429L21, 1/50, 0.02 RP11-71A24, 5/50, 0.1 RP11-71A24, 8/50, 0.16

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=15093586

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S273, 4/15, 27% PMID=10987304 D9S273, 7/15, 47% PMID=1314694 D9S15, 1/8, 13%

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