IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , MUSK, 0.50%, 1/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-1.03,p=6.48e-05 NR4A3,FC=-0.88,p=5.96e-05 NR4A3,FC=-1.35,p=8.7e-08 NR4A3,FC=0.46,p=0.06027928 NR4A3,FC=-1.11,p=6.98e-07 INVS,FC=-0.43,p=0.037683295 TMEFF1,FC=-0.34,p=0.227563277 BAAT,FC=-0.38,p=0.04655348 ZNF189,FC=-0.15,p=0.069981417 ALDOB,FC=-0.02,p=0.917917711 CYLC2,FC=-0.18,p=0.458041501 SMC2,FC=0.01,p=0.969064742 ABCA1,FC=0.30,p=0.049888691 ABCA1,FC=-0.00,p=0.992136787 ABCA1,FC=0.46,p=2.32e-07 FKTN,FC=-0.27,p=0.149384781 RAD23B,FC=0.03,p=0.734974933 KLF4,FC=-1.55,p=1.84e-15 IKBKAP,FC=-0.01,p=0.910656687 CTNNAL1,FC=-1.27,p=2.26e-15 PTPN3,FC=0.53,p=2.17e-05 PTPN3,FC=0.33,p=0.074409569 TXN,FC=0.35,p=0.011892359 SVEP1,FC=-1.78,p=3.22e-22 MUSK,FC=0.17,p=0.267001307 MUSK,FC=0.41,p=0.02518597 LPAR1,FC=-0.59,p=0.057753727 KIAA0368,FC=-0.40,p=0.054423465 UGCG,FC=-0.22,p=0.032229714 UGCG,FC=-0.56,p=0.012819891

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-1.60,p=0.000582237 NR4A3,FC=-1.39,p=6.9e-05 NR4A3,FC=-1.83,p=3.9e-06 NR4A3,FC=0.31,p=0.389067114 NR4A3,FC=-1.45,p=4.29e-06 INVS,FC=-0.28,p=0.26029791 TMEFF1,FC=-0.28,p=0.462010581 BAAT,FC=-0.41,p=0.101275191 ZNF189,FC=-0.45,p=0.001969586 ALDOB,FC=-0.35,p=0.150815424 CYLC2,FC=-0.13,p=0.718541303 SMC2,FC=0.55,p=0.127119188 ABCA1,FC=0.74,p=0.000752228 ABCA1,FC=0.07,p=0.839376564 ABCA1,FC=0.63,p=2.35e-07 FKTN,FC=0.01,p=0.959518746 RAD23B,FC=-0.08,p=0.336045753 KLF4,FC=-1.49,p=3.91e-10 IKBKAP,FC=0.38,p=0.001783762 CTNNAL1,FC=-1.17,p=1.74e-09 PTPN3,FC=0.73,p=2.16e-08 PTPN3,FC=0.58,p=0.010701745 TXN,FC=0.98,p=1.8e-06 SVEP1,FC=-1.84,p=2.92e-16 MUSK,FC=0.29,p=0.177028899 MUSK,FC=0.42,p=0.116626389 LPAR1,FC=-0.32,p=0.450842945 KIAA0368,FC=-0.40,p=0.117423011 UGCG,FC=-0.30,p=0.018325499 UGCG,FC=-1.32,p=1.41e-05


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-0.84,p=1.57e-12 NR4A3,FC=-0.04,p=0.625707641 NR4A3,FC=-2.42,p=2.17e-29 STX17,FC=-0.17,p=0.001012713 ERP44,FC=-0.05,p=0.32609746 ERP44,FC=-0.50,p=6.72e-07 ERP44,FC=-0.48,p=8.35e-23 INVS,FC=-0.50,p=0.000988669 INVS,FC=-0.08,p=0.167307474 INVS,FC=0.01,p=0.972203873 TEX10,FC=-0.15,p=0.000420272 TMEFF1,FC=0.20,p=0.138850705 TMEFF1,FC=0.38,p=0.01115805 BAAT,FC=0.08,p=0.530577022 ZNF189,FC=-0.38,p=2.1e-08 ALDOB,FC=0.29,p=0.008606131 ALDOB,FC=0.53,p=0.004241408 ALDOB,FC=-0.32,p=0.102799812 ALDOB,FC=0.87,p=3.72e-07 CYLC2,FC=-0.29,p=1.3e-05 SMC2,FC=0.95,p=1.65e-17 SMC2,FC=0.37,p=0.000142474 NIPSNAP3B,FC=-0.23,p=0.000122119 ABCA1,FC=0.18,p=0.146416984 ABCA1,FC=-0.39,p=3.85e-07 ABCA1,FC=-0.85,p=1.12e-23 FKTN,FC=-0.27,p=0.001158815 TMEM38B,FC=0.29,p=0.002338716 RAD23B,FC=1.36,p=1.26e-39 RAD23B,FC=0.07,p=0.631795984 RAD23B,FC=0.25,p=0.000136949 KLF4,FC=-2.60,p=1.78e-64 KLF4,FC=-2.00,p=8.06e-43 ACTL7B,FC=0.02,p=0.880948278 ACTL7A,FC=-0.29,p=1.14e-05 IKBKAP,FC=-0.42,p=0.000276786 IKBKAP,FC=-0.12,p=0.026511817 C9orf6,FC=-0.15,p=0.05225301 CTNNAL1,FC=-1.48,p=8.12e-66 EPB41L4B,FC=0.02,p=0.78584216 EPB41L4B,FC=0.07,p=0.385689244 PTPN3,FC=0.74,p=1.29e-20 TXN,FC=0.62,p=2.25e-14 SVEP1,FC=-0.63,p=1.53e-05 SVEP1,FC=-2.68,p=4.4e-54 MUSK,FC=-0.31,p=0.002979072 MUSK,FC=-0.42,p=0.00366666 LPAR1,FC=-0.38,p=3.79e-09 LPAR1,FC=-0.51,p=6.58e-05 LPAR1,FC=-0.28,p=0.002057333 KIAA0368,FC=0.06,p=0.327595445 KIAA0368,FC=-0.19,p=0.000795716 KIAA0368,FC=-0.81,p=1.15e-16 UGCG,FC=0.47,p=0.000216928 UGCG,FC=0.38,p=1.25e-05

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-2.31,p=1.77e-46 NR4A3,FC=6.52,p=1.27e-175 NR4A3,FC=-2.38,p=1.49e-29 STX17,FC=-0.21,p=0.0008452 ERP44,FC=-7.18,p=8.59e-159 ERP44,FC=-2.42,p=2.57e-38 ERP44,FC=-6.06,p=1.82e-109 INVS,FC=0.14,p=0.362999347 INVS,FC=2.18,p=4.16e-95 INVS,FC=3.36,p=2.09e-46 TEX10,FC=-3.69,p=6.23e-58 TMEFF1,FC=-0.50,p=0.00093718 TMEFF1,FC=-1.47,p=3.39e-23 BAAT,FC=0.37,p=0.109101243 ZNF189,FC=-0.44,p=8.64e-14 ALDOB,FC=3.89,p=7.52e-90 ALDOB,FC=3.43,p=4.33e-55 ALDOB,FC=5.63,p=1.74e-78 ALDOB,FC=0.14,p=0.365210608 CYLC2,FC=-0.68,p=1.98e-08 SMC2,FC=1.48,p=1.08e-20 SMC2,FC=1.62,p=3.29e-47 NIPSNAP3B,FC=-1.84,p=1.95e-35 ABCA1,FC=1.91,p=3.28e-42 ABCA1,FC=-1.48,p=1.12e-45 ABCA1,FC=-1.03,p=5.4e-32 FKTN,FC=-0.11,p=0.059673137 TMEM38B,FC=3.52,p=2.22e-111 RAD23B,FC=2.39,p=1.11e-52 RAD23B,FC=7.91,p=1.01e-148 RAD23B,FC=1.95,p=3.74e-76 KLF4,FC=-8.08,p=1.4e-163 KLF4,FC=-4.52,p=8.77e-77 ACTL7B,FC=3.71,p=2.02e-96 ACTL7A,FC=1.61,p=1.05e-10 IKBKAP,FC=4.99,p=6.39e-122 IKBKAP,FC=1.79,p=4.68e-89 C9orf6,FC=-1.03,p=3.15e-28 CTNNAL1,FC=-2.57,p=7.35e-86 EPB41L4B,FC=-4.91,p=5.95e-99 EPB41L4B,FC=-0.35,p=0.046097509 PTPN3,FC=-1.02,p=6.04e-31 TXN,FC=-3.04,p=7.92e-123 SVEP1,FC=0.13,p=0.371814905 SVEP1,FC=-0.78,p=5.6e-23 MUSK,FC=3.18,p=6.92e-88 MUSK,FC=1.43,p=2.79e-21 LPAR1,FC=-0.97,p=9.65e-32 LPAR1,FC=-2.58,p=4.39e-36 LPAR1,FC=0.29,p=8.25e-05 KIAA0368,FC=-2.39,p=6.21e-81 KIAA0368,FC=-1.54,p=2.56e-60 KIAA0368,FC=1.32,p=7.92e-31 UGCG,FC=-0.62,p=3.55e-05 UGCG,FC=-0.43,p=0.006742804


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-1.66,p=5.4e-13 NR4A3,FC=0.30,p=0.057104628 NR4A3,FC=-3.08,p=8.06e-30 STX17,FC=0.35,p=1.44e-09 STX17,FC=-0.11,p=0.568633208 STX17,FC=-0.30,p=7.36e-06 STX17,FC=-0.47,p=6.96e-12 STX17,FC=-0.33,p=2.59e-05 ERP44,FC=-1.60,p=3.12e-21 ERP44,FC=-0.41,p=2.64e-07 ERP44,FC=-0.01,p=0.846655426 INVS,FC=-0.48,p=0.011072447 INVS,FC=0.01,p=0.970019669 INVS,FC=0.21,p=0.003232318 TEX10,FC=0.26,p=0.000165589 C9orf30,FC=0.20,p=0.002878851 C9orf30,FC=-0.25,p=0.01722101 TMEFF1,FC=-0.38,p=0.10544119 TMEFF1,FC=-0.13,p=0.481196459 MURC,FC=-0.12,p=0.588678214 BAAT,FC=0.85,p=0.000137228 MRPL50,FC=0.24,p=0.028336407 MRPL50,FC=0.27,p=0.110969041 MRPL50,FC=0.13,p=0.182352655 ZNF189,FC=-0.24,p=0.000849513 ALDOB,FC=0.95,p=8.22e-05 ALDOB,FC=0.49,p=0.01125591 ALDOB,FC=-0.05,p=0.854394464 ALDOB,FC=-1.55,p=4.15e-12 ALDOB,FC=0.61,p=0.010977595 C9orf125,FC=-1.38,p=1.1e-11 RNF20,FC=-0.06,p=0.201824845 GRIN3A,FC=0.78,p=5.67e-05 GRIN3A,FC=0.07,p=0.701344018 ADSSL1,FC=0.56,p=5.07e-06 CYLC2,FC=0.52,p=0.002810029 SMC2,FC=0.12,p=0.305042845 SMC2,FC=0.49,p=0.000285924 FLJ36031,FC=-0.25,p=0.142812599 NIPSNAP3A,FC=0.36,p=0.042785448 NIPSNAP3A,FC=-0.46,p=1.47e-06 NIPSNAP3B,FC=-0.03,p=0.843429712 NIPSNAP3B,FC=-0.23,p=0.052657291 ABCA1,FC=-0.29,p=0.017490267 ABCA1,FC=-0.23,p=0.014786305 ABCA1,FC=0.01,p=0.956473396 ABCA1,FC=-0.42,p=0.033159867 SLC44A1,FC=0.98,p=8.54e-13 SLC44A1,FC=0.43,p=4.05e-09 SLC44A1,FC=-0.28,p=0.010252297 FSD1L,FC=-0.37,p=0.000100683 FSD1L,FC=-0.20,p=0.393540551 FKTN,FC=-0.17,p=0.015489713 TAL2,FC=0.18,p=0.109822771 TAL2,FC=-0.02,p=0.924764747 TMEM38B,FC=-0.51,p=8.87e-05 TMEM38B,FC=0.35,p=0.00063343 TMEM38B,FC=0.19,p=0.102618156 ZNF462,FC=-0.18,p=0.241950817 ZNF462,FC=0.27,p=0.027728175 RAD23B,FC=-0.15,p=0.065787599 RAD23B,FC=-0.04,p=0.830381282 RAD23B,FC=-0.51,p=4.71e-14 RAD23B,FC=0.23,p=0.017285345 KLF4,FC=-2.54,p=1.52e-37 KLF4,FC=-2.38,p=1.48e-34 ACTL7B,FC=0.28,p=0.045511244 ACTL7A,FC=-0.08,p=0.542777668 IKBKAP,FC=-0.13,p=0.021714172 IKBKAP,FC=-0.97,p=2.91e-12 C9orf6,FC=0.04,p=0.531552554 CTNNAL1,FC=-1.44,p=3.09e-39 C9orf5,FC=-0.28,p=0.041116925 C9orf5,FC=0.14,p=0.542117236 C9orf5,FC=-0.77,p=3.73e-20 C9orf5,FC=-0.95,p=2.39e-27 C9orf5,FC=-0.63,p=1.32e-09 C9orf5,FC=-0.10,p=0.384961907 C9orf4,FC=1.01,p=5.33e-07 EPB41L4B,FC=-0.21,p=0.3250763 EPB41L4B,FC=0.31,p=0.010901836 EPB41L4B,FC=0.59,p=0.001252982 EPB41L4B,FC=-0.20,p=0.277527993 EPB41L4B,FC=0.41,p=0.000832933 EPB41L4B,FC=-0.38,p=0.00317157 PTPN3,FC=0.43,p=8.1e-05 C9orf152,FC=0.10,p=0.627811305 TXN,FC=0.27,p=0.002365556 TXNDC8,FC=0.60,p=0.000303 SVEP1,FC=-1.78,p=2.61e-16 SVEP1,FC=-0.26,p=0.067688685 SVEP1,FC=-2.59,p=9.07e-35 SVEP1,FC=0.38,p=0.086633423 SVEP1,FC=-0.69,p=9.2e-09 SVEP1,FC=0.40,p=0.012169784 SVEP1,FC=-1.00,p=8.4e-07 MUSK,FC=-0.51,p=0.003528651 MUSK,FC=-0.10,p=0.565115041 MUSK,FC=-0.54,p=0.00606825 LPAR1,FC=-0.83,p=3.33e-06 LPAR1,FC=-0.86,p=2.2e-10 LPAR1,FC=0.29,p=0.002594552 LPAR1,FC=-0.81,p=3.31e-13 OR2K2,FC=0.42,p=0.030356914 KIAA0368,FC=-0.94,p=4.5e-18 KIAA0368,FC=-0.27,p=4.34e-05 KIAA0368,FC=-0.15,p=0.02022688 KIAA0368,FC=-0.37,p=0.0006375 ZNF483,FC=-0.27,p=0.159343667 ZNF483,FC=-0.22,p=0.245104308 ZNF483,FC=-0.47,p=0.016018026 ZNF483,FC=-1.19,p=6.9e-12 PTGR1,FC=0.91,p=8.3e-10 PTGR1,FC=0.63,p=0.000368267 PTGR1,FC=0.54,p=7.29e-05 PTGR1,FC=0.88,p=7.34e-11 C9orf84,FC=0.03,p=0.878227715 C9orf84,FC=0.94,p=2.08e-05 UGCG,FC=-0.37,p=0.000495406 UGCG,FC=-0.06,p=0.705530982 SUSD1,FC=-0.44,p=0.000161905

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-1.92,p=3.47e-14 NR4A3,FC=0.20,p=0.204400469 NR4A3,FC=-3.69,p=2.64e-31 STX17,FC=0.52,p=1.11e-12 STX17,FC=0.06,p=0.751138937 STX17,FC=-0.31,p=9.17e-05 STX17,FC=-0.55,p=1.04e-09 STX17,FC=-0.48,p=2.54e-07 ERP44,FC=-2.14,p=9.74e-23 ERP44,FC=-0.06,p=0.458188799 ERP44,FC=-0.01,p=0.83950303 INVS,FC=-0.93,p=2.45e-05 INVS,FC=0.47,p=0.004171494 INVS,FC=0.45,p=1.46e-07 TEX10,FC=0.92,p=1.26e-25 C9orf30,FC=0.68,p=2.22e-14 C9orf30,FC=-0.11,p=0.438120138 TMEFF1,FC=0.28,p=0.27510367 TMEFF1,FC=0.37,p=0.059642096 MURC,FC=-0.52,p=0.055541454 BAAT,FC=0.62,p=0.003401222 MRPL50,FC=0.53,p=8.77e-06 MRPL50,FC=-0.45,p=0.02260016 MRPL50,FC=0.25,p=0.021653819 ZNF189,FC=-0.35,p=5.55e-05 ALDOB,FC=-0.07,p=0.684037523 ALDOB,FC=0.43,p=0.005008145 ALDOB,FC=-0.18,p=0.523727983 ALDOB,FC=-2.26,p=1.35e-15 ALDOB,FC=-0.17,p=0.44033562 C9orf125,FC=0.54,p=0.002515586 RNF20,FC=0.30,p=2.34e-07 GRIN3A,FC=0.55,p=0.020933039 GRIN3A,FC=0.15,p=0.394208946 ADSSL1,FC=0.77,p=1.3e-07 CYLC2,FC=0.89,p=5.89e-06 SMC2,FC=0.66,p=1.75e-06 SMC2,FC=1.14,p=2.98e-12 FLJ36031,FC=0.16,p=0.413097544 NIPSNAP3A,FC=0.49,p=0.022743089 NIPSNAP3A,FC=-0.52,p=6.75e-06 NIPSNAP3B,FC=0.21,p=0.072702347 NIPSNAP3B,FC=-0.37,p=0.011534971 ABCA1,FC=0.02,p=0.85550082 ABCA1,FC=-0.00,p=0.976193776 ABCA1,FC=0.12,p=0.55058374 ABCA1,FC=0.01,p=0.957462918 SLC44A1,FC=1.95,p=1.3e-30 SLC44A1,FC=0.93,p=2.51e-22 SLC44A1,FC=0.21,p=0.088015535 FSD1L,FC=-0.54,p=9.15e-08 FSD1L,FC=-0.71,p=0.013948968 FKTN,FC=-0.19,p=0.038026071 TAL2,FC=0.18,p=0.131976761 TAL2,FC=-0.26,p=0.233876699 TMEM38B,FC=-0.18,p=0.24626511 TMEM38B,FC=1.00,p=3.59e-17 TMEM38B,FC=0.80,p=2.79e-08 ZNF462,FC=0.64,p=6.43e-07 ZNF462,FC=0.74,p=2.32e-05 RAD23B,FC=-0.05,p=0.653335616 RAD23B,FC=-0.69,p=0.00175377 RAD23B,FC=-0.53,p=5.16e-11 RAD23B,FC=0.19,p=0.079880401 KLF4,FC=-1.70,p=1.1e-22 KLF4,FC=-1.37,p=3.47e-12 ACTL7B,FC=0.10,p=0.498154899 ACTL7A,FC=-0.20,p=0.19155342 IKBKAP,FC=0.09,p=0.178687422 IKBKAP,FC=-0.71,p=4.48e-09 C9orf6,FC=0.17,p=0.018732356 CTNNAL1,FC=-1.31,p=4.42e-18 C9orf5,FC=-0.06,p=0.585635752 C9orf5,FC=0.14,p=0.62249962 C9orf5,FC=-1.23,p=6.1e-29 C9orf5,FC=-1.23,p=7.12e-29 C9orf5,FC=-0.89,p=3.18e-15 C9orf5,FC=0.15,p=0.178258764 C9orf4,FC=2.12,p=6.74e-16 EPB41L4B,FC=-0.25,p=0.325266693 EPB41L4B,FC=0.21,p=0.086370053 EPB41L4B,FC=0.84,p=0.000116987 EPB41L4B,FC=0.46,p=0.027119438 EPB41L4B,FC=0.63,p=1e-06 EPB41L4B,FC=-0.19,p=0.098664389 PTPN3,FC=0.76,p=2.49e-12 C9orf152,FC=-2.02,p=5.7e-22 TXN,FC=0.71,p=1.42e-08 TXNDC8,FC=0.88,p=7.11e-06 SVEP1,FC=-2.70,p=2.8e-24 SVEP1,FC=-0.15,p=0.328562404 SVEP1,FC=-2.28,p=5.59e-27 SVEP1,FC=0.85,p=0.000939519 SVEP1,FC=-0.41,p=0.002716423 SVEP1,FC=1.12,p=1.95e-08 SVEP1,FC=-1.21,p=2.36e-08 MUSK,FC=-0.81,p=2.55e-05 MUSK,FC=0.45,p=0.028047067 MUSK,FC=-0.16,p=0.502231524 LPAR1,FC=-1.17,p=1.27e-09 LPAR1,FC=-0.73,p=9.51e-07 LPAR1,FC=0.57,p=2.1e-09 LPAR1,FC=-0.67,p=9e-07 OR2K2,FC=0.75,p=0.00147357 KIAA0368,FC=-1.31,p=2.13e-26 KIAA0368,FC=-0.34,p=6.63e-05 KIAA0368,FC=-0.16,p=0.056526427 KIAA0368,FC=-0.54,p=8.74e-07 ZNF483,FC=-0.08,p=0.711872322 ZNF483,FC=-0.34,p=0.054805539 ZNF483,FC=-0.48,p=0.011543625 ZNF483,FC=-2.30,p=2.28e-25 PTGR1,FC=1.78,p=2.16e-19 PTGR1,FC=1.34,p=3.77e-09 PTGR1,FC=1.17,p=4.92e-09 PTGR1,FC=1.61,p=7.31e-16 C9orf84,FC=0.51,p=0.021864829 C9orf84,FC=1.36,p=4.09e-11 UGCG,FC=-0.67,p=1.62e-06 UGCG,FC=-0.31,p=0.065955131 SUSD1,FC=-1.19,p=3.42e-10


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=1.00,p=0.001039249 TMEFF1,FC=0.51,p=0.325542271 BAAT,FC=-0.88,p=0.116764968 ZNF189,FC=-0.06,p=0.783705283 ALDOB,FC=0.85,p=0.020131149 RAD23B,FC=0.11,p=0.75981978 RAD23B,FC=-1.50,p=0.162956328 RAD23B,FC=0.45,p=0.140911112 RAD23B,FC=-0.08,p=0.834305577 KLF4,FC=-1.98,p=1.32e-05 IKBKAP,FC=0.17,p=0.542999373 IKBKAP,FC=0.88,p=0.00356099 CTNNAL1,FC=-1.03,p=0.003148246 C9orf5,FC=-0.16,p=0.468898593 C9orf5,FC=-0.26,p=0.305073979 C9orf5,FC=-0.59,p=0.25404638 C9orf5,FC=-0.34,p=0.256927713 PTPN3,FC=0.84,p=0.019140982 TXN,FC=-0.99,p=0.001273187 KIAA0368,FC=0.51,p=0.051380959 UGCG,FC=0.51,p=0.069778222

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=0.47,p=0.400893983 TMEFF1,FC=0.90,p=0.0092226 BAAT,FC=-0.19,p=0.733616868 ZNF189,FC=0.15,p=0.630639021 ALDOB,FC=1.21,p=0.000908327 RAD23B,FC=-0.13,p=0.632649615 RAD23B,FC=-3.83,p=0.002102832 RAD23B,FC=0.60,p=0.046383342 RAD23B,FC=-0.17,p=0.666470976 KLF4,FC=-1.71,p=0.000820551 IKBKAP,FC=0.22,p=0.512145569 IKBKAP,FC=0.82,p=0.007496235 CTNNAL1,FC=-0.89,p=0.036367421 C9orf5,FC=-0.64,p=0.036112017 C9orf5,FC=-0.89,p=0.010972653 C9orf5,FC=-0.01,p=0.971736626 C9orf5,FC=-1.04,p=0.000431803 PTPN3,FC=0.57,p=0.028298881 TXN,FC=-1.42,p=0.000582309 KIAA0368,FC=-0.01,p=0.980944751 UGCG,FC=0.45,p=0.209926242


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-0.08,p=0.023521002 STX17,FC=0.01,p=0.650675717 INVS,FC=0.02,p=0.636941331 TMEFF1,FC=0.09,p=0.090483044 BAAT,FC=0.10,p=0.059005834 MRPL50,FC=0.34,p=4.79e-06 ZNF189,FC=0.02,p=0.40121044 ALDOB,FC=0.01,p=0.750639465 RNF20,FC=-0.11,p=0.006116359 GRIN3A,FC=0.08,p=0.263028451 CYLC2,FC=0.07,p=0.537918817 NIPSNAP3A,FC=0.02,p=0.73164537 NIPSNAP3B,FC=0.03,p=0.197937101 ABCA1,FC=-0.03,p=0.220054435 TAL2,FC=0.05,p=0.016263265 ZNF462,FC=0.05,p=0.603183567 ZNF462,FC=0.09,p=0.238912862 RAD23B,FC=0.07,p=0.289861211 KLF4,FC=-0.36,p=6.44e-13 ACTL7B,FC=0.08,p=0.24198759 ACTL7A,FC=0.02,p=0.714620069 IKBKAP,FC=-0.01,p=0.787194561 CTNNAL1,FC=-0.35,p=0.000127097 C9orf5,FC=-0.27,p=2.31e-05 C9orf5,FC=-0.01,p=0.845549947 C9orf4,FC=0.04,p=0.629657605 EPB41L4B,FC=0.06,p=0.041593907 EPB41L4B,FC=0.08,p=0.034990329 C9orf152,FC=0.08,p=0.549804579 TXN,FC=0.34,p=0.000729507 MUSK,FC=0.03,p=0.213204601 KIAA0368,FC=-0.00,p=0.942125801 KIAA0368,FC=0.02,p=0.711270271 ZNF483,FC=-0.26,p=0.002656609 UGCG,FC=-0.07,p=0.479918198 SUSD1,FC=-0.14,p=0.069090197

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      NR4A3,FC=-0.08,p=0.078141164 STX17,FC=-0.00,p=0.981897366 INVS,FC=0.05,p=0.19648221 TMEFF1,FC=0.11,p=0.041066939 BAAT,FC=0.05,p=0.21489443 MRPL50,FC=0.50,p=4.92e-09 ZNF189,FC=0.02,p=0.527186817 ALDOB,FC=0.01,p=0.570591452 RNF20,FC=-0.06,p=0.195919173 GRIN3A,FC=0.10,p=0.29570294 CYLC2,FC=0.06,p=0.459525295 NIPSNAP3A,FC=0.06,p=0.20831331 NIPSNAP3B,FC=0.04,p=0.065387859 ABCA1,FC=-0.03,p=0.419891614 TAL2,FC=0.03,p=0.151790847 ZNF462,FC=0.08,p=0.320675849 ZNF462,FC=0.12,p=0.098909301 RAD23B,FC=0.14,p=0.015868791 KLF4,FC=-0.24,p=0.000339525 ACTL7B,FC=0.07,p=0.394828286 ACTL7A,FC=0.01,p=0.850290213 IKBKAP,FC=0.11,p=0.133432648 CTNNAL1,FC=-0.37,p=0.005682677 C9orf5,FC=-0.36,p=5.39e-09 C9orf5,FC=-0.14,p=0.001909982 C9orf4,FC=0.11,p=0.225928625 EPB41L4B,FC=0.07,p=0.07167318 EPB41L4B,FC=0.07,p=0.065799724 C9orf152,FC=-0.29,p=0.00182998 TXN,FC=0.65,p=1.01e-06 MUSK,FC=0.04,p=0.081975375 KIAA0368,FC=-0.00,p=0.9390819 KIAA0368,FC=0.02,p=0.807570797 ZNF483,FC=-0.29,p=0.001675396 UGCG,FC=-0.11,p=0.202129929 SUSD1,FC=-0.27,p=0.000730985


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-32,Mean=-0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-32,Mean=0.06

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

NR4A3,FC=-0.72,p=1.15e-07 NR4A3,FC=-0.12,p=0.292907589 NR4A3,FC=-2.38,p=8.06e-19 STX17,FC=0.04,p=0.506468059 ERP44,FC=0.01,p=0.785358357 ERP44,FC=-0.44,p=4.71e-06 ERP44,FC=-0.71,p=5.22e-32 INVS,FC=-0.42,p=0.010810737 INVS,FC=0.22,p=0.000676917 INVS,FC=0.44,p=0.02920527 TEX10,FC=-0.26,p=1.44e-09 TMEFF1,FC=0.39,p=0.006407569 TMEFF1,FC=0.49,p=0.004194667 BAAT,FC=0.77,p=2.56e-05 ZNF189,FC=-0.24,p=0.000428841 ALDOB,FC=0.21,p=0.103819791 ALDOB,FC=0.60,p=0.003865457 ALDOB,FC=-0.20,p=0.344004201 ALDOB,FC=0.71,p=0.000468193 CYLC2,FC=-0.54,p=3.48e-10 SMC2,FC=0.98,p=2.33e-14 SMC2,FC=0.44,p=4.2e-06 NIPSNAP3B,FC=-0.50,p=2.7e-09 ABCA1,FC=-0.01,p=0.93835341 ABCA1,FC=-0.56,p=2.18e-11 ABCA1,FC=-0.91,p=1.38e-25 FKTN,FC=-0.23,p=0.000128603 TMEM38B,FC=0.53,p=1.31e-05 RAD23B,FC=1.43,p=3.74e-34 RAD23B,FC=0.43,p=0.006625338 RAD23B,FC=0.20,p=0.003870942 KLF4,FC=-2.40,p=1.71e-41 KLF4,FC=-1.71,p=5.58e-24 ACTL7B,FC=-0.22,p=0.082205357 ACTL7A,FC=-0.33,p=4.44e-05 IKBKAP,FC=-0.28,p=0.028443983 IKBKAP,FC=-0.16,p=0.000631116 C9orf6,FC=-0.15,p=0.04943807 CTNNAL1,FC=-1.47,p=5.39e-54 EPB41L4B,FC=-0.09,p=0.251575679 EPB41L4B,FC=-0.62,p=2.08e-05 PTPN3,FC=0.62,p=2.03e-12 TXN,FC=0.68,p=3.25e-15 SVEP1,FC=-0.82,p=2.44e-06 SVEP1,FC=-2.44,p=2.09e-35 MUSK,FC=-0.31,p=0.006512793 MUSK,FC=-0.84,p=5.74e-06 LPAR1,FC=-0.64,p=4.12e-18 LPAR1,FC=-0.31,p=0.016597876 LPAR1,FC=-0.26,p=0.002836211 KIAA0368,FC=0.15,p=0.02805057 KIAA0368,FC=-0.01,p=0.863973608 KIAA0368,FC=-0.84,p=2.23e-19 UGCG,FC=1.31,p=1.92e-19 UGCG,FC=0.63,p=1.71e-10

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-208F1, 4/50, 0.08 RP11-208F1, 0/50, 0 RP11-80H12, 4/50, 0.08 RP11-80H12, 6/50, 0.12 RP11-75J9, 4/50, 0.08 RP11-75J9, 6/50, 0.12 RP11-318L4, 2/50, 0.04 RP11-318L4, 10/50, 0.2 RP11-185E13, 3/50, 0.06 RP11-185E13, 10/50, 0.2 RP11-31J20, 6/50, 0.12 RP11-31J20, 2/50, 0.04 RP11-287A8, 0/50, 0 RP11-287A8, 1/50, 0.02 RP11-540H22, 1/50, 0.02 RP11-540H22, 10/50, 0.2 RP11-438P9, 5/50, 0.1 RP11-438P9, 4/50, 0.08 RP11-400A24, 4/50, 0.08 RP11-400A24, 3/50, 0.06 RP11-388N6, 5/50, 0.1 RP11-388N6, 3/50, 0.06 RP11-470J20, 7/50, 0.14 RP11-470J20, 2/50, 0.04 RP11-202G18, 3/50, 0.06 RP11-202G18, 5/50, 0.1 RP11-570D4, 8/50, 0.16 RP11-570D4, 4/50, 0.08

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S1112, 22/35, 63% D9S1690, 7/18, 39% PMID=10987304 D9S1677, 8/13, 62%

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