IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ROD1,FC=0.61,p=0.004214868 HSDL2,FC=-0.68,p=0.00068042 ZFP37,FC=-0.19,p=0.409933405 SLC31A2,FC=-0.99,p=7.18e-18 FKBP15,FC=-0.22,p=1.34e-05 SLC31A1,FC=0.02,p=0.871517643 PRPF4,FC=0.07,p=0.352581215 PRPF4,FC=0.24,p=0.000569658 ALAD,FC=0.58,p=0.00011061 POLE3,FC=0.04,p=0.579808469 RGS3,FC=-0.37,p=9.28e-05 AMBP,FC=0.74,p=0.001123695 ATP6V1G1,FC=-0.15,p=0.045752486 C9orf91,FC=-0.50,p=0.051104964

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ROD1,FC=0.55,p=0.095650979 HSDL2,FC=-0.78,p=0.006260462 ZFP37,FC=0.47,p=0.079492632 SLC31A2,FC=-1.06,p=2.92e-14 FKBP15,FC=-0.43,p=1.52e-06 SLC31A1,FC=-0.21,p=0.136053481 PRPF4,FC=0.66,p=1.17e-08 PRPF4,FC=0.73,p=1.59e-09 ALAD,FC=0.63,p=0.00135372 POLE3,FC=0.56,p=3.15e-08 RGS3,FC=-1.13,p=9.46e-15 AMBP,FC=0.33,p=0.010831197 ATP6V1G1,FC=0.04,p=0.687308684 C9orf91,FC=-0.92,p=0.007821266


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ROD1,FC=1.10,p=3.03e-33 ROD1,FC=0.45,p=1.03e-09 ROD1,FC=1.17,p=5.25e-26 HSDL2,FC=-0.64,p=5.28e-09 HSDL2,FC=-0.85,p=3.33e-26 ZFP37,FC=-0.32,p=0.013293862 SLC31A2,FC=-1.15,p=1.63e-31 FKBP15,FC=-0.48,p=8.29e-27 FKBP15,FC=-0.57,p=1.17e-30 FKBP15,FC=1.20,p=5.88e-17 SLC31A1,FC=0.29,p=6.43e-05 PRPF4,FC=1.10,p=1.52e-32 PRPF4,FC=0.54,p=3.49e-16 BSPRY,FC=0.64,p=1.13e-13 HDHD3,FC=1.17,p=6.47e-31 ALAD,FC=-0.14,p=0.091684127 ALAD,FC=1.72,p=2.74e-42 POLE3,FC=0.32,p=2.55e-09 RGS3,FC=-0.30,p=0.008618665 RGS3,FC=-0.48,p=6.75e-09 AMBP,FC=0.56,p=0.008220954 ORM1,FC=0.71,p=0.005038545 ORM1,FC=0.29,p=0.155027339 DFNB31,FC=-0.13,p=0.290917894 DFNB31,FC=0.55,p=0.000223173 ATP6V1G1,FC=0.15,p=0.009141661 C9orf91,FC=0.14,p=0.00668247 TNFSF15,FC=0.61,p=2.4e-08

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ROD1,FC=-1.44,p=5.42e-20 ROD1,FC=-0.16,p=0.173141624 ROD1,FC=0.53,p=0.000113114 HSDL2,FC=1.39,p=3.89e-48 HSDL2,FC=-0.90,p=2.59e-45 ZFP37,FC=0.33,p=0.005773976 SLC31A2,FC=-0.69,p=2.04e-17 FKBP15,FC=-2.80,p=1.34e-86 FKBP15,FC=-4.02,p=1.56e-100 FKBP15,FC=2.65,p=8.59e-46 SLC31A1,FC=1.41,p=5.13e-42 PRPF4,FC=3.50,p=1.9e-92 PRPF4,FC=1.66,p=1.46e-44 BSPRY,FC=1.98,p=4.46e-68 HDHD3,FC=0.28,p=0.009679659 ALAD,FC=3.06,p=1.81e-105 ALAD,FC=5.24,p=8.35e-115 POLE3,FC=-3.94,p=1.34e-106 RGS3,FC=0.78,p=7.71e-13 RGS3,FC=-3.37,p=6.5e-85 AMBP,FC=5.86,p=3.78e-156 ORM1,FC=1.90,p=3.88e-31 ORM1,FC=2.31,p=7.26e-49 DFNB31,FC=0.35,p=0.00018157 DFNB31,FC=-1.39,p=6.34e-18 ATP6V1G1,FC=-6.17,p=1.67e-145 C9orf91,FC=-5.10,p=1.4e-137 TNFSF15,FC=0.20,p=0.041120273


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SUSD1,FC=-0.44,p=0.000161905 ROD1,FC=0.95,p=3.95e-14 ROD1,FC=0.76,p=2.01e-13 ROD1,FC=1.04,p=1.64e-16 ROD1,FC=-0.17,p=0.006003934 ROD1,FC=0.36,p=2.77e-05 HSDL2,FC=-1.10,p=3.37e-22 HSDL2,FC=-0.88,p=1.36e-13 HSDL2,FC=-0.47,p=0.000451183 C9orf80,FC=0.61,p=1.06e-07 C9orf80,FC=0.28,p=0.000209504 SNX30,FC=-1.22,p=1.47e-19 SLC46A2,FC=-2.84,p=2.62e-26 LOC169834,FC=-0.00,p=0.993900693 ZFP37,FC=-0.22,p=0.118722037 C9orf109,FC=0.10,p=0.607721157 SLC31A2,FC=-1.36,p=3.07e-29 FKBP15,FC=-0.53,p=2.29e-13 FKBP15,FC=-0.55,p=2.85e-19 FKBP15,FC=0.06,p=0.766981436 FKBP15,FC=-0.10,p=0.639345289 FKBP15,FC=-0.15,p=0.586220072 SLC31A1,FC=-1.13,p=1.84e-16 SLC31A1,FC=-0.37,p=0.005032575 PRPF4,FC=0.22,p=0.108075819 PRPF4,FC=0.26,p=0.000599181 RNF183,FC=1.10,p=4.44e-06 WDR31,FC=0.25,p=0.054215384 BSPRY,FC=0.52,p=3.96e-05 BSPRY,FC=0.94,p=2.98e-15 HDHD3,FC=0.98,p=8.04e-23 ALAD,FC=0.94,p=1.81e-17 ALAD,FC=-0.48,p=1.97e-08 POLE3,FC=0.54,p=5.15e-11 C9orf43,FC=0.01,p=0.959988273 RGS3,FC=-0.51,p=0.004681724 RGS3,FC=0.14,p=0.11320815 RGS3,FC=-0.67,p=3.17e-13 ZNF618,FC=0.16,p=0.177118736 ZNF618,FC=0.23,p=0.026730357 ZNF618,FC=0.13,p=0.266618461 AMBP,FC=0.36,p=0.230165792 KIF12,FC=0.60,p=0.001716118 COL27A1,FC=-0.07,p=0.731390279 COL27A1,FC=0.22,p=0.094535179 COL27A1,FC=0.05,p=0.698922529 COL27A1,FC=0.41,p=0.033135443 COL27A1,FC=0.31,p=0.02229073 ORM1,FC=-0.49,p=0.0475516 ORM1,FC=-0.93,p=0.000193877 AKNA,FC=-0.55,p=1.02e-05 DFNB31,FC=-0.21,p=0.214344754 DFNB31,FC=0.14,p=0.419273907 ATP6V1G1,FC=0.05,p=0.529927326 ATP6V1G1,FC=-0.04,p=0.622746441 C9orf91,FC=0.14,p=0.074905809 TNFSF15,FC=0.12,p=0.483059927

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SUSD1,FC=-1.19,p=3.42e-10 ROD1,FC=1.26,p=7.56e-21 ROD1,FC=0.95,p=1.05e-13 ROD1,FC=1.24,p=5.52e-19 ROD1,FC=-0.21,p=0.004138597 ROD1,FC=0.70,p=1.97e-14 HSDL2,FC=-1.57,p=8.23e-29 HSDL2,FC=-1.27,p=5e-18 HSDL2,FC=-0.92,p=5.13e-09 C9orf80,FC=0.66,p=2.76e-06 C9orf80,FC=0.14,p=0.094430724 SNX30,FC=-2.13,p=1.82e-38 SLC46A2,FC=-4.28,p=6.33e-42 LOC169834,FC=0.08,p=0.771328184 ZFP37,FC=-0.02,p=0.862516467 C9orf109,FC=-0.77,p=0.001390546 SLC31A2,FC=-1.66,p=4.26e-22 FKBP15,FC=-0.47,p=5.37e-09 FKBP15,FC=-0.52,p=5.26e-11 FKBP15,FC=0.37,p=0.023117698 FKBP15,FC=-0.13,p=0.565643713 FKBP15,FC=-0.58,p=0.016422663 SLC31A1,FC=-1.23,p=2.86e-11 SLC31A1,FC=-0.96,p=1.96e-08 PRPF4,FC=0.95,p=3.13e-12 PRPF4,FC=0.90,p=5.79e-16 RNF183,FC=0.76,p=0.000851615 WDR31,FC=0.51,p=0.001410426 BSPRY,FC=-0.70,p=7.73e-07 BSPRY,FC=0.09,p=0.470751626 HDHD3,FC=0.82,p=8.15e-09 ALAD,FC=1.14,p=1.6e-18 ALAD,FC=-1.00,p=4.38e-15 POLE3,FC=1.23,p=8.39e-30 C9orf43,FC=0.28,p=0.099204418 RGS3,FC=-0.74,p=9.19e-05 RGS3,FC=0.05,p=0.646645369 RGS3,FC=-1.07,p=4.62e-17 ZNF618,FC=0.12,p=0.345775548 ZNF618,FC=0.26,p=0.049793098 ZNF618,FC=0.21,p=0.069331053 AMBP,FC=-1.32,p=2.37e-11 KIF12,FC=-0.08,p=0.675602626 COL27A1,FC=0.58,p=0.011291878 COL27A1,FC=0.74,p=4.78e-07 COL27A1,FC=0.07,p=0.674041136 COL27A1,FC=1.05,p=1.85e-05 COL27A1,FC=1.15,p=6.74e-16 ORM1,FC=-2.11,p=8.27e-17 ORM1,FC=-2.14,p=1.03e-17 AKNA,FC=-1.17,p=3.33e-10 DFNB31,FC=-0.28,p=0.130810088 DFNB31,FC=-0.13,p=0.517427834 ATP6V1G1,FC=0.03,p=0.65817757 ATP6V1G1,FC=0.15,p=0.057616561 C9orf91,FC=0.35,p=2.18e-05 TNFSF15,FC=-0.60,p=0.000346289


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      ROD1,FC=0.25,p=0.418078869 SLC31A2,FC=-1.35,p=4.45e-05 SLC31A1,FC=-0.36,p=0.14245963 POLE3,FC=0.59,p=0.022278191

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      ROD1,FC=0.52,p=0.048948482 SLC31A2,FC=-1.44,p=0.00074171 SLC31A1,FC=-0.27,p=0.3157001 POLE3,FC=1.17,p=0.001235022


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      SUSD1,FC=-0.14,p=0.069090197 ROD1,FC=0.08,p=0.012778293 ZFP37,FC=0.06,p=0.366286853 SLC31A2,FC=-0.46,p=4.13e-09 SLC31A1,FC=0.01,p=0.74467061 SLC31A1,FC=-0.18,p=1.97e-06 PRPF4,FC=0.02,p=0.596431995 BSPRY,FC=0.08,p=0.504200344 HDHD3,FC=0.08,p=0.065176567 ALAD,FC=-0.04,p=0.389639502 POLE3,FC=-0.03,p=0.705488061 C9orf43,FC=0.04,p=0.000190575 RGS3,FC=-0.20,p=1.12e-07 ZNF618,FC=0.02,p=0.793071293 AMBP,FC=0.03,p=0.876705215 KIF12,FC=-0.00,p=0.949882883 COL27A1,FC=0.16,p=0.025381091 COL27A1,FC=-0.04,p=0.316556001 ORM1,FC=-0.08,p=0.371672416 DFNB31,FC=0.01,p=0.618117605 ATP6V1G1,FC=0.31,p=3.5e-05 C9orf91,FC=0.01,p=0.628482284 TNFSF15,FC=0.02,p=0.562644092

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      SUSD1,FC=-0.27,p=0.000730985 ROD1,FC=0.13,p=0.000325914 ZFP37,FC=0.08,p=0.246751173 SLC31A2,FC=-0.50,p=1.58e-10 SLC31A1,FC=0.01,p=0.514470579 SLC31A1,FC=-0.21,p=2.84e-05 PRPF4,FC=0.07,p=0.123314925 BSPRY,FC=-0.34,p=0.006626433 HDHD3,FC=0.07,p=0.06435298 ALAD,FC=-0.06,p=0.102480217 POLE3,FC=0.14,p=0.056965938 C9orf43,FC=0.04,p=0.013197889 RGS3,FC=-0.26,p=8.04e-12 ZNF618,FC=-0.03,p=0.663463823 AMBP,FC=-0.17,p=0.063037523 KIF12,FC=0.02,p=0.71884318 COL27A1,FC=0.20,p=0.033178968 COL27A1,FC=-0.03,p=0.563844696 ORM1,FC=-0.19,p=0.001929962 DFNB31,FC=0.02,p=0.489481866 ATP6V1G1,FC=0.36,p=8.93e-06 C9orf91,FC=0.01,p=0.707354155 TNFSF15,FC=-0.02,p=0.528776616


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-455,Mean=-0.03

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-455,Mean=0.02

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

ROD1,FC=1.52,p=1.12e-40 ROD1,FC=0.73,p=7.01e-18 ROD1,FC=1.53,p=4.72e-26 HSDL2,FC=-0.38,p=0.000311225 HSDL2,FC=-0.71,p=2.55e-17 ZFP37,FC=-0.13,p=0.308733339 SLC31A2,FC=-1.21,p=1.46e-26 FKBP15,FC=-0.59,p=8.14e-28 FKBP15,FC=-0.54,p=1.45e-23 FKBP15,FC=2.07,p=8.74e-36 SLC31A1,FC=0.58,p=3.94e-08 PRPF4,FC=1.37,p=4.66e-31 PRPF4,FC=0.56,p=3.54e-13 BSPRY,FC=0.57,p=1.08e-09 HDHD3,FC=1.30,p=6.19e-30 ALAD,FC=-0.03,p=0.776344433 ALAD,FC=2.22,p=8.68e-58 POLE3,FC=0.36,p=1.43e-07 RGS3,FC=-0.57,p=2.13e-05 RGS3,FC=-0.45,p=1.56e-08 AMBP,FC=0.29,p=0.091096422 ORM1,FC=0.89,p=0.000399627 ORM1,FC=0.28,p=0.19623332 DFNB31,FC=-0.58,p=0.000113003 DFNB31,FC=0.54,p=0.001110874 ATP6V1G1,FC=0.43,p=3.17e-10 C9orf91,FC=0.20,p=0.000548578 TNFSF15,FC=1.25,p=3.64e-21

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-88M9, 8/50, 0.16 RP11-88M9, 2/50, 0.04 RP11-534I8, 12/50, 0.24 RP11-534I8, 4/50, 0.08 RP11-78H18, 6/50, 0.12 RP11-78H18, 4/50, 0.08

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11391799

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

There is no LOH frequency data!

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