IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

, , MUSK, 0.50%, 1/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.03,p=0.734974933 KLF4,FC=-1.55,p=1.84e-15 IKBKAP,FC=-0.01,p=0.910656687 CTNNAL1,FC=-1.27,p=2.26e-15 PTPN3,FC=0.53,p=2.17e-05 PTPN3,FC=0.33,p=0.074409569 TXN,FC=0.35,p=0.011892359 SVEP1,FC=-1.78,p=3.22e-22 MUSK,FC=0.17,p=0.267001307 MUSK,FC=0.41,p=0.02518597 LPAR1,FC=-0.59,p=0.057753727 KIAA0368,FC=-0.40,p=0.054423465 UGCG,FC=-0.56,p=0.012819891 UGCG,FC=-0.22,p=0.032229714 ROD1,FC=0.61,p=0.004214868 HSDL2,FC=-0.68,p=0.00068042 ZFP37,FC=-0.19,p=0.409933405 SLC31A2,FC=-0.99,p=7.18e-18 FKBP15,FC=-0.22,p=1.34e-05 SLC31A1,FC=0.02,p=0.871517643 PRPF4,FC=0.24,p=0.000569658 PRPF4,FC=0.07,p=0.352581215 ALAD,FC=0.58,p=0.00011061 POLE3,FC=0.04,p=0.579808469 RGS3,FC=-0.37,p=9.28e-05 AMBP,FC=0.74,p=0.001123695 ATP6V1G1,FC=-0.15,p=0.045752486 C9orf91,FC=-0.50,p=0.051104964 TNFSF8,FC=-0.36,p=0.01555352 TNC,FC=0.19,p=0.473112457 TNC,FC=0.29,p=0.256219888 PAPPA,FC=0.11,p=0.57787466 ASTN2,FC=-0.01,p=0.940778605 TRIM32,FC=0.19,p=0.169900015 DBC1,FC=0.14,p=0.599232501

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=-0.08,p=0.336045753 KLF4,FC=-1.49,p=3.91e-10 IKBKAP,FC=0.38,p=0.001783762 CTNNAL1,FC=-1.17,p=1.74e-09 PTPN3,FC=0.73,p=2.16e-08 PTPN3,FC=0.58,p=0.010701745 TXN,FC=0.98,p=1.8e-06 SVEP1,FC=-1.84,p=2.92e-16 MUSK,FC=0.29,p=0.177028899 MUSK,FC=0.42,p=0.116626389 LPAR1,FC=-0.32,p=0.450842945 KIAA0368,FC=-0.40,p=0.117423011 UGCG,FC=-1.32,p=1.41e-05 UGCG,FC=-0.30,p=0.018325499 ROD1,FC=0.55,p=0.095650979 HSDL2,FC=-0.78,p=0.006260462 ZFP37,FC=0.47,p=0.079492632 SLC31A2,FC=-1.06,p=2.92e-14 FKBP15,FC=-0.43,p=1.52e-06 SLC31A1,FC=-0.21,p=0.136053481 PRPF4,FC=0.73,p=1.59e-09 PRPF4,FC=0.66,p=1.17e-08 ALAD,FC=0.63,p=0.00135372 POLE3,FC=0.56,p=3.15e-08 RGS3,FC=-1.13,p=9.46e-15 AMBP,FC=0.33,p=0.010831197 ATP6V1G1,FC=0.04,p=0.687308684 C9orf91,FC=-0.92,p=0.007821266 TNFSF8,FC=-0.90,p=0.000145346 TNC,FC=0.94,p=0.001863637 TNC,FC=0.41,p=0.28441258 PAPPA,FC=-0.13,p=0.561406992 ASTN2,FC=-0.59,p=0.03791113 TRIM32,FC=0.21,p=0.295552787 DBC1,FC=-0.50,p=0.09931325


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=1.36,p=1.26e-39 RAD23B,FC=0.25,p=0.000136949 RAD23B,FC=0.07,p=0.631795984 KLF4,FC=-2.60,p=1.78e-64 KLF4,FC=-2.00,p=8.06e-43 ACTL7B,FC=0.02,p=0.880948278 ACTL7A,FC=-0.29,p=1.14e-05 IKBKAP,FC=-0.12,p=0.026511817 IKBKAP,FC=-0.42,p=0.000276786 C9orf6,FC=-0.15,p=0.05225301 CTNNAL1,FC=-1.48,p=8.12e-66 EPB41L4B,FC=0.07,p=0.385689244 EPB41L4B,FC=0.02,p=0.78584216 PTPN3,FC=0.74,p=1.29e-20 TXN,FC=0.62,p=2.25e-14 SVEP1,FC=-0.63,p=1.53e-05 SVEP1,FC=-2.68,p=4.4e-54 MUSK,FC=-0.42,p=0.00366666 MUSK,FC=-0.31,p=0.002979072 LPAR1,FC=-0.38,p=3.79e-09 LPAR1,FC=-0.28,p=0.002057333 LPAR1,FC=-0.51,p=6.58e-05 KIAA0368,FC=-0.19,p=0.000795716 KIAA0368,FC=-0.81,p=1.15e-16 KIAA0368,FC=0.06,p=0.327595445 UGCG,FC=0.38,p=1.25e-05 UGCG,FC=0.47,p=0.000216928 ROD1,FC=1.10,p=3.03e-33 ROD1,FC=1.17,p=5.25e-26 ROD1,FC=0.45,p=1.03e-09 HSDL2,FC=-0.64,p=5.28e-09 HSDL2,FC=-0.85,p=3.33e-26 ZFP37,FC=-0.32,p=0.013293862 SLC31A2,FC=-1.15,p=1.63e-31 FKBP15,FC=-0.48,p=8.29e-27 FKBP15,FC=-0.57,p=1.17e-30 FKBP15,FC=1.20,p=5.88e-17 SLC31A1,FC=0.29,p=6.43e-05 PRPF4,FC=1.10,p=1.52e-32 PRPF4,FC=0.54,p=3.49e-16 BSPRY,FC=0.64,p=1.13e-13 HDHD3,FC=1.17,p=6.47e-31 ALAD,FC=-0.14,p=0.091684127 ALAD,FC=1.72,p=2.74e-42 POLE3,FC=0.32,p=2.55e-09 RGS3,FC=-0.30,p=0.008618665 RGS3,FC=-0.48,p=6.75e-09 AMBP,FC=0.56,p=0.008220954 ORM1,FC=0.71,p=0.005038545 ORM1,FC=0.29,p=0.155027339 DFNB31,FC=0.55,p=0.000223173 DFNB31,FC=-0.13,p=0.290917894 ATP6V1G1,FC=0.15,p=0.009141661 C9orf91,FC=0.14,p=0.00668247 TNFSF15,FC=0.61,p=2.4e-08 TNFSF8,FC=-0.37,p=3.47e-07 TNC,FC=0.79,p=7.79e-06 TNC,FC=0.09,p=0.525236792 DEC1,FC=-0.62,p=1.06e-07 PAPPA,FC=0.26,p=0.036403225 PAPPA,FC=0.46,p=0.000175948 ASTN2,FC=-0.05,p=0.695669017 ASTN2,FC=0.19,p=0.159416122 ASTN2,FC=0.09,p=0.443266051 TRIM32,FC=-0.01,p=0.775105169 TLR4,FC=-0.60,p=1.69e-12 DBC1,FC=-0.53,p=9.71e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=2.39,p=1.11e-52 RAD23B,FC=1.95,p=3.74e-76 RAD23B,FC=7.91,p=1.01e-148 KLF4,FC=-8.08,p=1.4e-163 KLF4,FC=-4.52,p=8.77e-77 ACTL7B,FC=3.71,p=2.02e-96 ACTL7A,FC=1.61,p=1.05e-10 IKBKAP,FC=1.79,p=4.68e-89 IKBKAP,FC=4.99,p=6.39e-122 C9orf6,FC=-1.03,p=3.15e-28 CTNNAL1,FC=-2.57,p=7.35e-86 EPB41L4B,FC=-0.35,p=0.046097509 EPB41L4B,FC=-4.91,p=5.95e-99 PTPN3,FC=-1.02,p=6.04e-31 TXN,FC=-3.04,p=7.92e-123 SVEP1,FC=0.13,p=0.371814905 SVEP1,FC=-0.78,p=5.6e-23 MUSK,FC=1.43,p=2.79e-21 MUSK,FC=3.18,p=6.92e-88 LPAR1,FC=-0.97,p=9.65e-32 LPAR1,FC=0.29,p=8.25e-05 LPAR1,FC=-2.58,p=4.39e-36 KIAA0368,FC=-1.54,p=2.56e-60 KIAA0368,FC=1.32,p=7.92e-31 KIAA0368,FC=-2.39,p=6.21e-81 UGCG,FC=-0.43,p=0.006742804 UGCG,FC=-0.62,p=3.55e-05 ROD1,FC=-1.44,p=5.42e-20 ROD1,FC=0.53,p=0.000113114 ROD1,FC=-0.16,p=0.173141624 HSDL2,FC=1.39,p=3.89e-48 HSDL2,FC=-0.90,p=2.59e-45 ZFP37,FC=0.33,p=0.005773976 SLC31A2,FC=-0.69,p=2.04e-17 FKBP15,FC=-2.80,p=1.34e-86 FKBP15,FC=-4.02,p=1.56e-100 FKBP15,FC=2.65,p=8.59e-46 SLC31A1,FC=1.41,p=5.13e-42 PRPF4,FC=3.50,p=1.9e-92 PRPF4,FC=1.66,p=1.46e-44 BSPRY,FC=1.98,p=4.46e-68 HDHD3,FC=0.28,p=0.009679659 ALAD,FC=3.06,p=1.81e-105 ALAD,FC=5.24,p=8.35e-115 POLE3,FC=-3.94,p=1.34e-106 RGS3,FC=0.78,p=7.71e-13 RGS3,FC=-3.37,p=6.5e-85 AMBP,FC=5.86,p=3.78e-156 ORM1,FC=1.90,p=3.88e-31 ORM1,FC=2.31,p=7.26e-49 DFNB31,FC=-1.39,p=6.34e-18 DFNB31,FC=0.35,p=0.00018157 ATP6V1G1,FC=-6.17,p=1.67e-145 C9orf91,FC=-5.10,p=1.4e-137 TNFSF15,FC=0.20,p=0.041120273 TNFSF8,FC=-1.59,p=7.09e-31 TNC,FC=2.45,p=1.54e-83 TNC,FC=2.01,p=2.59e-38 DEC1,FC=-0.02,p=0.823357176 PAPPA,FC=2.57,p=1.35e-53 PAPPA,FC=5.65,p=7.59e-125 ASTN2,FC=4.28,p=1.08e-96 ASTN2,FC=-1.17,p=3.35e-08 ASTN2,FC=1.66,p=6.45e-36 TRIM32,FC=-0.23,p=0.001191135 TLR4,FC=-1.59,p=7.78e-44 DBC1,FC=-1.99,p=9.93e-25


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=-0.04,p=0.830381282 RAD23B,FC=-0.15,p=0.065787599 RAD23B,FC=0.23,p=0.017285345 RAD23B,FC=-0.51,p=4.71e-14 KLF4,FC=-2.38,p=1.48e-34 KLF4,FC=-2.54,p=1.52e-37 ACTL7B,FC=0.28,p=0.045511244 ACTL7A,FC=-0.08,p=0.542777668 IKBKAP,FC=-0.97,p=2.91e-12 IKBKAP,FC=-0.13,p=0.021714172 C9orf6,FC=0.04,p=0.531552554 CTNNAL1,FC=-1.44,p=3.09e-39 C9orf5,FC=-0.95,p=2.39e-27 C9orf5,FC=-0.28,p=0.041116925 C9orf5,FC=-0.77,p=3.73e-20 C9orf5,FC=0.14,p=0.542117236 C9orf5,FC=-0.63,p=1.32e-09 C9orf5,FC=-0.10,p=0.384961907 C9orf4,FC=1.01,p=5.33e-07 EPB41L4B,FC=0.59,p=0.001252982 EPB41L4B,FC=0.31,p=0.010901836 EPB41L4B,FC=-0.20,p=0.277527993 EPB41L4B,FC=-0.38,p=0.00317157 EPB41L4B,FC=0.41,p=0.000832933 EPB41L4B,FC=-0.21,p=0.3250763 PTPN3,FC=0.43,p=8.1e-05 C9orf152,FC=0.10,p=0.627811305 TXN,FC=0.27,p=0.002365556 TXNDC8,FC=0.60,p=0.000303 SVEP1,FC=0.40,p=0.012169784 SVEP1,FC=-0.26,p=0.067688685 SVEP1,FC=0.38,p=0.086633423 SVEP1,FC=-2.59,p=9.07e-35 SVEP1,FC=-0.69,p=9.2e-09 SVEP1,FC=-1.00,p=8.4e-07 SVEP1,FC=-1.78,p=2.61e-16 MUSK,FC=-0.10,p=0.565115041 MUSK,FC=-0.54,p=0.00606825 MUSK,FC=-0.51,p=0.003528651 LPAR1,FC=-0.86,p=2.2e-10 LPAR1,FC=-0.83,p=3.33e-06 LPAR1,FC=0.29,p=0.002594552 LPAR1,FC=-0.81,p=3.31e-13 OR2K2,FC=0.42,p=0.030356914 KIAA0368,FC=-0.37,p=0.0006375 KIAA0368,FC=-0.15,p=0.02022688 KIAA0368,FC=-0.94,p=4.5e-18 KIAA0368,FC=-0.27,p=4.34e-05 ZNF483,FC=-0.22,p=0.245104308 ZNF483,FC=-0.27,p=0.159343667 ZNF483,FC=-0.47,p=0.016018026 ZNF483,FC=-1.19,p=6.9e-12 PTGR1,FC=0.63,p=0.000368267 PTGR1,FC=0.91,p=8.3e-10 PTGR1,FC=0.88,p=7.34e-11 PTGR1,FC=0.54,p=7.29e-05 C9orf84,FC=0.03,p=0.878227715 C9orf84,FC=0.94,p=2.08e-05 UGCG,FC=-0.06,p=0.705530982 UGCG,FC=-0.37,p=0.000495406 SUSD1,FC=-0.44,p=0.000161905 ROD1,FC=0.95,p=3.95e-14 ROD1,FC=0.76,p=2.01e-13 ROD1,FC=1.04,p=1.64e-16 ROD1,FC=-0.17,p=0.006003934 ROD1,FC=0.36,p=2.77e-05 HSDL2,FC=-1.10,p=3.37e-22 HSDL2,FC=-0.47,p=0.000451183 HSDL2,FC=-0.88,p=1.36e-13 C9orf80,FC=0.28,p=0.000209504 C9orf80,FC=0.61,p=1.06e-07 SNX30,FC=-1.22,p=1.47e-19 SLC46A2,FC=-2.84,p=2.62e-26 LOC169834,FC=-0.00,p=0.993900693 ZFP37,FC=-0.22,p=0.118722037 C9orf109,FC=0.10,p=0.607721157 SLC31A2,FC=-1.36,p=3.07e-29 FKBP15,FC=-0.53,p=2.29e-13 FKBP15,FC=-0.15,p=0.586220072 FKBP15,FC=-0.10,p=0.639345289 FKBP15,FC=0.06,p=0.766981436 FKBP15,FC=-0.55,p=2.85e-19 SLC31A1,FC=-1.13,p=1.84e-16 SLC31A1,FC=-0.37,p=0.005032575 PRPF4,FC=0.26,p=0.000599181 PRPF4,FC=0.22,p=0.108075819 RNF183,FC=1.10,p=4.44e-06 WDR31,FC=0.25,p=0.054215384 BSPRY,FC=0.52,p=3.96e-05 BSPRY,FC=0.94,p=2.98e-15 HDHD3,FC=0.98,p=8.04e-23 ALAD,FC=-0.48,p=1.97e-08 ALAD,FC=0.94,p=1.81e-17 POLE3,FC=0.54,p=5.15e-11 C9orf43,FC=0.01,p=0.959988273 RGS3,FC=-0.51,p=0.004681724 RGS3,FC=-0.67,p=3.17e-13 RGS3,FC=0.14,p=0.11320815 ZNF618,FC=0.16,p=0.177118736 ZNF618,FC=0.23,p=0.026730357 ZNF618,FC=0.13,p=0.266618461 AMBP,FC=0.36,p=0.230165792 KIF12,FC=0.60,p=0.001716118 COL27A1,FC=-0.07,p=0.731390279 COL27A1,FC=0.22,p=0.094535179 COL27A1,FC=0.31,p=0.02229073 COL27A1,FC=0.41,p=0.033135443 COL27A1,FC=0.05,p=0.698922529 ORM1,FC=-0.93,p=0.000193877 ORM1,FC=-0.49,p=0.0475516 AKNA,FC=-0.55,p=1.02e-05 DFNB31,FC=0.14,p=0.419273907 DFNB31,FC=-0.21,p=0.214344754 ATP6V1G1,FC=-0.04,p=0.622746441 ATP6V1G1,FC=0.05,p=0.529927326 C9orf91,FC=0.14,p=0.074905809 TNFSF15,FC=0.12,p=0.483059927 TNFSF8,FC=-0.33,p=0.039985161 TNC,FC=0.58,p=0.010245751 TNC,FC=0.34,p=0.07265986 TNC,FC=-0.68,p=0.00023342 TNC,FC=-1.18,p=3.56e-07 DEC1,FC=0.63,p=0.000424165 PAPPA,FC=0.20,p=0.261297061 PAPPA,FC=0.37,p=0.029660693 PAPPA,FC=-0.71,p=0.000178738 PAPPA,FC=0.09,p=0.662002726 PAPPA,FC=-0.40,p=0.022208729 PAPPA,FC=-0.46,p=0.01549565 PAPPA,FC=-1.07,p=1.39e-06 PAPPA,FC=-0.48,p=0.014186449 PAPPA,FC=0.59,p=0.001029133 PAPPA,FC=-0.18,p=0.280558744 PAPPA,FC=-0.24,p=0.19000577 PAPPA,FC=0.21,p=0.265952058 ASTN2,FC=-0.06,p=0.664057385 ASTN2,FC=0.47,p=0.021242917 ASTN2,FC=0.33,p=0.141757492 ASTN2,FC=-0.07,p=0.64952128 TRIM32,FC=0.12,p=0.186897583 TRIM32,FC=0.32,p=6.47e-07 TLR4,FC=-1.60,p=6.51e-19 TLR4,FC=-0.67,p=7.05e-07 TLR4,FC=-1.52,p=1.27e-16 TLR4,FC=-1.15,p=4.25e-07 DBC1,FC=0.10,p=0.590732989 DBC1,FC=0.16,p=0.489222534

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=-0.69,p=0.00175377 RAD23B,FC=-0.05,p=0.653335616 RAD23B,FC=0.19,p=0.079880401 RAD23B,FC=-0.53,p=5.16e-11 KLF4,FC=-1.37,p=3.47e-12 KLF4,FC=-1.70,p=1.1e-22 ACTL7B,FC=0.10,p=0.498154899 ACTL7A,FC=-0.20,p=0.19155342 IKBKAP,FC=-0.71,p=4.48e-09 IKBKAP,FC=0.09,p=0.178687422 C9orf6,FC=0.17,p=0.018732356 CTNNAL1,FC=-1.31,p=4.42e-18 C9orf5,FC=-1.23,p=7.12e-29 C9orf5,FC=-0.06,p=0.585635752 C9orf5,FC=-1.23,p=6.1e-29 C9orf5,FC=0.14,p=0.62249962 C9orf5,FC=-0.89,p=3.18e-15 C9orf5,FC=0.15,p=0.178258764 C9orf4,FC=2.12,p=6.74e-16 EPB41L4B,FC=0.84,p=0.000116987 EPB41L4B,FC=0.21,p=0.086370053 EPB41L4B,FC=0.46,p=0.027119438 EPB41L4B,FC=-0.19,p=0.098664389 EPB41L4B,FC=0.63,p=1e-06 EPB41L4B,FC=-0.25,p=0.325266693 PTPN3,FC=0.76,p=2.49e-12 C9orf152,FC=-2.02,p=5.7e-22 TXN,FC=0.71,p=1.42e-08 TXNDC8,FC=0.88,p=7.11e-06 SVEP1,FC=1.12,p=1.95e-08 SVEP1,FC=-0.15,p=0.328562404 SVEP1,FC=0.85,p=0.000939519 SVEP1,FC=-2.28,p=5.59e-27 SVEP1,FC=-0.41,p=0.002716423 SVEP1,FC=-1.21,p=2.36e-08 SVEP1,FC=-2.70,p=2.8e-24 MUSK,FC=0.45,p=0.028047067 MUSK,FC=-0.16,p=0.502231524 MUSK,FC=-0.81,p=2.55e-05 LPAR1,FC=-0.73,p=9.51e-07 LPAR1,FC=-1.17,p=1.27e-09 LPAR1,FC=0.57,p=2.1e-09 LPAR1,FC=-0.67,p=9e-07 OR2K2,FC=0.75,p=0.00147357 KIAA0368,FC=-0.54,p=8.74e-07 KIAA0368,FC=-0.16,p=0.056526427 KIAA0368,FC=-1.31,p=2.13e-26 KIAA0368,FC=-0.34,p=6.63e-05 ZNF483,FC=-0.34,p=0.054805539 ZNF483,FC=-0.08,p=0.711872322 ZNF483,FC=-0.48,p=0.011543625 ZNF483,FC=-2.30,p=2.28e-25 PTGR1,FC=1.34,p=3.77e-09 PTGR1,FC=1.78,p=2.16e-19 PTGR1,FC=1.61,p=7.31e-16 PTGR1,FC=1.17,p=4.92e-09 C9orf84,FC=0.51,p=0.021864829 C9orf84,FC=1.36,p=4.09e-11 UGCG,FC=-0.31,p=0.065955131 UGCG,FC=-0.67,p=1.62e-06 SUSD1,FC=-1.19,p=3.42e-10 ROD1,FC=1.26,p=7.56e-21 ROD1,FC=0.95,p=1.05e-13 ROD1,FC=1.24,p=5.52e-19 ROD1,FC=-0.21,p=0.004138597 ROD1,FC=0.70,p=1.97e-14 HSDL2,FC=-1.57,p=8.23e-29 HSDL2,FC=-0.92,p=5.13e-09 HSDL2,FC=-1.27,p=5e-18 C9orf80,FC=0.14,p=0.094430724 C9orf80,FC=0.66,p=2.76e-06 SNX30,FC=-2.13,p=1.82e-38 SLC46A2,FC=-4.28,p=6.33e-42 LOC169834,FC=0.08,p=0.771328184 ZFP37,FC=-0.02,p=0.862516467 C9orf109,FC=-0.77,p=0.001390546 SLC31A2,FC=-1.66,p=4.26e-22 FKBP15,FC=-0.47,p=5.37e-09 FKBP15,FC=-0.58,p=0.016422663 FKBP15,FC=-0.13,p=0.565643713 FKBP15,FC=0.37,p=0.023117698 FKBP15,FC=-0.52,p=5.26e-11 SLC31A1,FC=-1.23,p=2.86e-11 SLC31A1,FC=-0.96,p=1.96e-08 PRPF4,FC=0.90,p=5.79e-16 PRPF4,FC=0.95,p=3.13e-12 RNF183,FC=0.76,p=0.000851615 WDR31,FC=0.51,p=0.001410426 BSPRY,FC=-0.70,p=7.73e-07 BSPRY,FC=0.09,p=0.470751626 HDHD3,FC=0.82,p=8.15e-09 ALAD,FC=-1.00,p=4.38e-15 ALAD,FC=1.14,p=1.6e-18 POLE3,FC=1.23,p=8.39e-30 C9orf43,FC=0.28,p=0.099204418 RGS3,FC=-0.74,p=9.19e-05 RGS3,FC=-1.07,p=4.62e-17 RGS3,FC=0.05,p=0.646645369 ZNF618,FC=0.12,p=0.345775548 ZNF618,FC=0.26,p=0.049793098 ZNF618,FC=0.21,p=0.069331053 AMBP,FC=-1.32,p=2.37e-11 KIF12,FC=-0.08,p=0.675602626 COL27A1,FC=0.58,p=0.011291878 COL27A1,FC=0.74,p=4.78e-07 COL27A1,FC=1.15,p=6.74e-16 COL27A1,FC=1.05,p=1.85e-05 COL27A1,FC=0.07,p=0.674041136 ORM1,FC=-2.14,p=1.03e-17 ORM1,FC=-2.11,p=8.27e-17 AKNA,FC=-1.17,p=3.33e-10 DFNB31,FC=-0.13,p=0.517427834 DFNB31,FC=-0.28,p=0.130810088 ATP6V1G1,FC=0.15,p=0.057616561 ATP6V1G1,FC=0.03,p=0.65817757 C9orf91,FC=0.35,p=2.18e-05 TNFSF15,FC=-0.60,p=0.000346289 TNFSF8,FC=-0.66,p=0.000307346 TNC,FC=0.42,p=0.073939541 TNC,FC=0.97,p=3.11e-06 TNC,FC=-0.29,p=0.116746632 TNC,FC=-1.09,p=3.25e-05 DEC1,FC=0.84,p=6.68e-05 PAPPA,FC=0.32,p=0.121937184 PAPPA,FC=0.97,p=3.36e-06 PAPPA,FC=-0.89,p=2.39e-06 PAPPA,FC=-0.11,p=0.630240027 PAPPA,FC=-0.46,p=0.006336065 PAPPA,FC=-0.56,p=0.004518886 PAPPA,FC=-1.92,p=7.92e-11 PAPPA,FC=-0.60,p=0.009219408 PAPPA,FC=1.39,p=1.91e-10 PAPPA,FC=-0.22,p=0.232018278 PAPPA,FC=0.05,p=0.733599806 PAPPA,FC=0.72,p=0.000425422 ASTN2,FC=-0.02,p=0.943948409 ASTN2,FC=1.24,p=6.97e-08 ASTN2,FC=0.62,p=0.014947017 ASTN2,FC=0.01,p=0.940767721 TRIM32,FC=0.06,p=0.607113433 TRIM32,FC=0.60,p=1.3e-11 TLR4,FC=-2.31,p=1.59e-21 TLR4,FC=-0.91,p=6.35e-10 TLR4,FC=-2.03,p=1.32e-17 TLR4,FC=-2.02,p=9.14e-14 DBC1,FC=0.03,p=0.894140513 DBC1,FC=0.14,p=0.566734603


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.45,p=0.140911112 RAD23B,FC=-1.50,p=0.162956328 RAD23B,FC=-0.08,p=0.834305577 RAD23B,FC=0.11,p=0.75981978 KLF4,FC=-1.98,p=1.32e-05 IKBKAP,FC=0.17,p=0.542999373 IKBKAP,FC=0.88,p=0.00356099 CTNNAL1,FC=-1.03,p=0.003148246 C9orf5,FC=-0.16,p=0.468898593 C9orf5,FC=-0.26,p=0.305073979 C9orf5,FC=-0.59,p=0.25404638 C9orf5,FC=-0.34,p=0.256927713 PTPN3,FC=0.84,p=0.019140982 TXN,FC=-0.99,p=0.001273187 KIAA0368,FC=0.51,p=0.051380959 UGCG,FC=0.51,p=0.069778222 ROD1,FC=0.25,p=0.418078869 SLC31A2,FC=-1.35,p=4.45e-05 SLC31A1,FC=-0.36,p=0.14245963 POLE3,FC=0.59,p=0.022278191 PAPPA,FC=1.82,p=0.000589657 PAPPA,FC=0.65,p=0.178813094 TRIM32,FC=0.49,p=0.009953476

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.60,p=0.046383342 RAD23B,FC=-3.83,p=0.002102832 RAD23B,FC=-0.17,p=0.666470976 RAD23B,FC=-0.13,p=0.632649615 KLF4,FC=-1.71,p=0.000820551 IKBKAP,FC=0.22,p=0.512145569 IKBKAP,FC=0.82,p=0.007496235 CTNNAL1,FC=-0.89,p=0.036367421 C9orf5,FC=-0.64,p=0.036112017 C9orf5,FC=-0.89,p=0.010972653 C9orf5,FC=-0.01,p=0.971736626 C9orf5,FC=-1.04,p=0.000431803 PTPN3,FC=0.57,p=0.028298881 TXN,FC=-1.42,p=0.000582309 KIAA0368,FC=-0.01,p=0.980944751 UGCG,FC=0.45,p=0.209926242 ROD1,FC=0.52,p=0.048948482 SLC31A2,FC=-1.44,p=0.00074171 SLC31A1,FC=-0.27,p=0.3157001 POLE3,FC=1.17,p=0.001235022 PAPPA,FC=1.69,p=0.002897879 PAPPA,FC=0.18,p=0.690219684 TRIM32,FC=0.73,p=0.013851319


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.07,p=0.289861211 KLF4,FC=-0.36,p=6.44e-13 ACTL7B,FC=0.08,p=0.24198759 ACTL7A,FC=0.02,p=0.714620069 IKBKAP,FC=-0.01,p=0.787194561 CTNNAL1,FC=-0.35,p=0.000127097 C9orf5,FC=-0.01,p=0.845549947 C9orf5,FC=-0.27,p=2.31e-05 C9orf4,FC=0.04,p=0.629657605 EPB41L4B,FC=0.08,p=0.034990329 EPB41L4B,FC=0.06,p=0.041593907 C9orf152,FC=0.08,p=0.549804579 TXN,FC=0.34,p=0.000729507 MUSK,FC=0.03,p=0.213204601 KIAA0368,FC=-0.00,p=0.942125801 KIAA0368,FC=0.02,p=0.711270271 ZNF483,FC=-0.26,p=0.002656609 UGCG,FC=-0.07,p=0.479918198 SUSD1,FC=-0.14,p=0.069090197 ROD1,FC=0.08,p=0.012778293 ZFP37,FC=0.06,p=0.366286853 SLC31A2,FC=-0.46,p=4.13e-09 SLC31A1,FC=-0.18,p=1.97e-06 SLC31A1,FC=0.01,p=0.74467061 PRPF4,FC=0.02,p=0.596431995 BSPRY,FC=0.08,p=0.504200344 HDHD3,FC=0.08,p=0.065176567 ALAD,FC=-0.04,p=0.389639502 POLE3,FC=-0.03,p=0.705488061 C9orf43,FC=0.04,p=0.000190575 RGS3,FC=-0.20,p=1.12e-07 ZNF618,FC=0.02,p=0.793071293 AMBP,FC=0.03,p=0.876705215 KIF12,FC=-0.00,p=0.949882883 COL27A1,FC=-0.04,p=0.316556001 COL27A1,FC=0.16,p=0.025381091 ORM1,FC=-0.08,p=0.371672416 DFNB31,FC=0.01,p=0.618117605 ATP6V1G1,FC=0.31,p=3.5e-05 C9orf91,FC=0.01,p=0.628482284 TNFSF15,FC=0.02,p=0.562644092 TNFSF8,FC=-0.11,p=0.000497739 TNFSF8,FC=0.08,p=0.046009861 TNC,FC=0.41,p=0.00531625 PAPPA,FC=0.10,p=0.002663325 PAPPA,FC=0.07,p=0.097916768 ASTN2,FC=-0.04,p=0.205030644 TRIM32,FC=0.05,p=0.031794608 TRIM32,FC=-0.01,p=0.533687845 TLR4,FC=-0.23,p=2.54e-06 DBC1,FC=-0.07,p=0.445947676 DBC1,FC=0.05,p=0.09539765

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      RAD23B,FC=0.14,p=0.015868791 KLF4,FC=-0.24,p=0.000339525 ACTL7B,FC=0.07,p=0.394828286 ACTL7A,FC=0.01,p=0.850290213 IKBKAP,FC=0.11,p=0.133432648 CTNNAL1,FC=-0.37,p=0.005682677 C9orf5,FC=-0.14,p=0.001909982 C9orf5,FC=-0.36,p=5.39e-09 C9orf4,FC=0.11,p=0.225928625 EPB41L4B,FC=0.07,p=0.065799724 EPB41L4B,FC=0.07,p=0.07167318 C9orf152,FC=-0.29,p=0.00182998 TXN,FC=0.65,p=1.01e-06 MUSK,FC=0.04,p=0.081975375 KIAA0368,FC=-0.00,p=0.9390819 KIAA0368,FC=0.02,p=0.807570797 ZNF483,FC=-0.29,p=0.001675396 UGCG,FC=-0.11,p=0.202129929 SUSD1,FC=-0.27,p=0.000730985 ROD1,FC=0.13,p=0.000325914 ZFP37,FC=0.08,p=0.246751173 SLC31A2,FC=-0.50,p=1.58e-10 SLC31A1,FC=-0.21,p=2.84e-05 SLC31A1,FC=0.01,p=0.514470579 PRPF4,FC=0.07,p=0.123314925 BSPRY,FC=-0.34,p=0.006626433 HDHD3,FC=0.07,p=0.06435298 ALAD,FC=-0.06,p=0.102480217 POLE3,FC=0.14,p=0.056965938 C9orf43,FC=0.04,p=0.013197889 RGS3,FC=-0.26,p=8.04e-12 ZNF618,FC=-0.03,p=0.663463823 AMBP,FC=-0.17,p=0.063037523 KIF12,FC=0.02,p=0.71884318 COL27A1,FC=-0.03,p=0.563844696 COL27A1,FC=0.20,p=0.033178968 ORM1,FC=-0.19,p=0.001929962 DFNB31,FC=0.02,p=0.489481866 ATP6V1G1,FC=0.36,p=8.93e-06 C9orf91,FC=0.01,p=0.707354155 TNFSF15,FC=-0.02,p=0.528776616 TNFSF8,FC=-0.11,p=0.002052707 TNFSF8,FC=0.07,p=0.079959825 TNC,FC=0.55,p=0.000613881 PAPPA,FC=0.08,p=0.009847199 PAPPA,FC=0.07,p=0.05892827 ASTN2,FC=-0.05,p=0.244291626 TRIM32,FC=0.06,p=0.071289398 TRIM32,FC=-0.02,p=0.430795026 TLR4,FC=-0.22,p=7.03e-06 DBC1,FC=-0.10,p=0.164558443 DBC1,FC=0.05,p=0.024307184


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picture,Mean=0.00

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-32,Mean=-0.00 hsa-mir-455,Mean=-0.03

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-32,Mean=0.06 hsa-mir-455,Mean=0.02

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RAD23B,FC=1.43,p=3.74e-34 RAD23B,FC=0.20,p=0.003870942 RAD23B,FC=0.43,p=0.006625338 KLF4,FC=-2.40,p=1.71e-41 KLF4,FC=-1.71,p=5.58e-24 ACTL7B,FC=-0.22,p=0.082205357 ACTL7A,FC=-0.33,p=4.44e-05 IKBKAP,FC=-0.16,p=0.000631116 IKBKAP,FC=-0.28,p=0.028443983 C9orf6,FC=-0.15,p=0.04943807 CTNNAL1,FC=-1.47,p=5.39e-54 EPB41L4B,FC=-0.62,p=2.08e-05 EPB41L4B,FC=-0.09,p=0.251575679 PTPN3,FC=0.62,p=2.03e-12 TXN,FC=0.68,p=3.25e-15 SVEP1,FC=-0.82,p=2.44e-06 SVEP1,FC=-2.44,p=2.09e-35 MUSK,FC=-0.84,p=5.74e-06 MUSK,FC=-0.31,p=0.006512793 LPAR1,FC=-0.64,p=4.12e-18 LPAR1,FC=-0.26,p=0.002836211 LPAR1,FC=-0.31,p=0.016597876 KIAA0368,FC=-0.01,p=0.863973608 KIAA0368,FC=-0.84,p=2.23e-19 KIAA0368,FC=0.15,p=0.02805057 UGCG,FC=0.63,p=1.71e-10 UGCG,FC=1.31,p=1.92e-19 ROD1,FC=1.52,p=1.12e-40 ROD1,FC=1.53,p=4.72e-26 ROD1,FC=0.73,p=7.01e-18 HSDL2,FC=-0.38,p=0.000311225 HSDL2,FC=-0.71,p=2.55e-17 ZFP37,FC=-0.13,p=0.308733339 SLC31A2,FC=-1.21,p=1.46e-26 FKBP15,FC=-0.59,p=8.14e-28 FKBP15,FC=-0.54,p=1.45e-23 FKBP15,FC=2.07,p=8.74e-36 SLC31A1,FC=0.58,p=3.94e-08 PRPF4,FC=1.37,p=4.66e-31 PRPF4,FC=0.56,p=3.54e-13 BSPRY,FC=0.57,p=1.08e-09 HDHD3,FC=1.30,p=6.19e-30 ALAD,FC=-0.03,p=0.776344433 ALAD,FC=2.22,p=8.68e-58 POLE3,FC=0.36,p=1.43e-07 RGS3,FC=-0.57,p=2.13e-05 RGS3,FC=-0.45,p=1.56e-08 AMBP,FC=0.29,p=0.091096422 ORM1,FC=0.89,p=0.000399627 ORM1,FC=0.28,p=0.19623332 DFNB31,FC=0.54,p=0.001110874 DFNB31,FC=-0.58,p=0.000113003 ATP6V1G1,FC=0.43,p=3.17e-10 C9orf91,FC=0.20,p=0.000548578 TNFSF15,FC=1.25,p=3.64e-21 TNFSF8,FC=-0.54,p=5.71e-10 TNC,FC=0.83,p=7.86e-07 TNC,FC=-0.07,p=0.630235862 DEC1,FC=-0.79,p=7.81e-09 PAPPA,FC=0.43,p=0.001182865 PAPPA,FC=0.50,p=0.000144204 ASTN2,FC=0.25,p=0.057648319 ASTN2,FC=0.15,p=0.332986361 ASTN2,FC=0.09,p=0.470496064 TRIM32,FC=-0.09,p=0.088627447 TLR4,FC=-0.49,p=1.81e-07 DBC1,FC=-0.78,p=1.55e-09

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-438P9, 5/50, 0.1 RP11-438P9, 4/50, 0.08 RP11-400A24, 4/50, 0.08 RP11-400A24, 3/50, 0.06 RP11-388N6, 5/50, 0.1 RP11-388N6, 3/50, 0.06 RP11-470J20, 7/50, 0.14 RP11-470J20, 2/50, 0.04 RP11-202G18, 3/50, 0.06 RP11-202G18, 5/50, 0.1 RP11-570D4, 8/50, 0.16 RP11-570D4, 4/50, 0.08 RP11-88M9, 8/50, 0.16 RP11-88M9, 2/50, 0.04 RP11-534I8, 12/50, 0.24 RP11-534I8, 4/50, 0.08 RP11-78H18, 6/50, 0.12 RP11-78H18, 4/50, 0.08 RP11-445L6, 4/50, 0.08 RP11-445L6, 6/50, 0.12 RP11-382H18, 3/50, 0.06 RP11-382H18, 10/50, 0.2 RP11-58C3, 4/50, 0.08 RP11-58C3, 6/50, 0.12 RP11-67K19, 4/50, 0.08 RP11-67K19, 5/50, 0.1 RP11-388N2, 6/50, 0.12 RP11-388N2, 18/50, 0.36 RP11-451E16, 4/50, 0.08 RP11-451E16, 16/50, 0.32 RP11-574M5, 2/50, 0.04 RP11-574M5, 14/50, 0.28 RP11-28O4, 6/50, 0.12 RP11-28O4, 5/50, 0.1

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11391799

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D9S1677, 8/13, 62% PMID=10987304 D9S1776, 10/16, 63% D9S934, 4/20, 20% PMID=15900585 D9S934, 4/18, 22%

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