IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

GSN , up, 49/108(32%) HSPA5, up, 88/132(67%) , 0.00%, /

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=-0.36,p=0.01555352 TNC,FC=0.19,p=0.473112457 TNC,FC=0.29,p=0.256219888 PAPPA,FC=0.11,p=0.57787466 ASTN2,FC=-0.01,p=0.940778605 TRIM32,FC=0.19,p=0.169900015 DBC1,FC=0.14,p=0.599232501 MEGF9,FC=-0.51,p=0.000114647 PSMD5,FC=0.31,p=2.44e-06 TRAF1,FC=0.33,p=0.008170112 TRAF1,FC=0.53,p=0.00013236 C5,FC=-0.59,p=0.044504721 CEP110,FC=-0.42,p=0.042251106 RAB14,FC=-0.50,p=3.05e-13 GSN,FC=-1.21,p=3.25e-17 STOM,FC=-1.37,p=3.3e-29 PTGS1,FC=-0.60,p=9.8e-05 PDCL,FC=-0.72,p=0.002590868 ZBTB6,FC=0.02,p=0.921597372 RABGAP1,FC=-0.50,p=1.5e-06 LHX2,FC=-0.10,p=0.554200078 LHX2,FC=0.51,p=0.014949531 PSMB7,FC=0.13,p=0.081342105 PSMB7,FC=-0.06,p=0.46997897 NR5A1,FC=0.51,p=0.002107343 NR6A1,FC=-0.01,p=0.958806883 OLFML2A,FC=-0.76,p=1.22e-10 GOLGA1,FC=0.11,p=0.101922278 GOLGA1,FC=-0.57,p=0.01567072 PPP6C,FC=-0.36,p=0.000129242 RABEPK,FC=0.15,p=0.097434398 HSPA5,FC=0.47,p=1.45e-07 GAPVD1,FC=-0.05,p=0.677162235 GAPVD1,FC=-0.70,p=9.68e-08 MAPKAP1,FC=0.06,p=0.450751158 PBX3,FC=-0.44,p=0.000841551 LMX1B,FC=0.04,p=0.73043392 ZBTB43,FC=-0.57,p=0.001888476 RALGPS1,FC=-0.04,p=0.815293185 ANGPTL2,FC=-0.06,p=0.597993264 ZNF79,FC=0.35,p=0.055624072

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=-0.90,p=0.000145346 TNC,FC=0.94,p=0.001863637 TNC,FC=0.41,p=0.28441258 PAPPA,FC=-0.13,p=0.561406992 ASTN2,FC=-0.59,p=0.03791113 TRIM32,FC=0.21,p=0.295552787 DBC1,FC=-0.50,p=0.09931325 MEGF9,FC=-0.87,p=6.88e-09 PSMD5,FC=0.44,p=1.49e-06 TRAF1,FC=-0.15,p=0.396094708 TRAF1,FC=0.46,p=0.044501635 C5,FC=-1.73,p=1.17e-11 CEP110,FC=-0.30,p=0.289166142 RAB14,FC=-0.50,p=1.63e-07 GSN,FC=-0.88,p=9.88e-07 STOM,FC=-1.54,p=7.55e-21 PTGS1,FC=-0.79,p=6.86e-06 PDCL,FC=-1.56,p=1.16e-05 ZBTB6,FC=0.04,p=0.910180357 RABGAP1,FC=-0.04,p=0.776998599 LHX2,FC=0.14,p=0.543956987 LHX2,FC=0.98,p=7.08e-05 PSMB7,FC=0.51,p=1.96e-06 PSMB7,FC=0.49,p=8.89e-07 NR5A1,FC=0.37,p=0.067388017 NR6A1,FC=0.42,p=0.115950429 OLFML2A,FC=-0.38,p=0.018369782 GOLGA1,FC=0.13,p=0.176700304 GOLGA1,FC=0.18,p=0.578890953 PPP6C,FC=-0.06,p=0.566234259 RABEPK,FC=0.31,p=0.006696937 HSPA5,FC=0.35,p=0.008916366 GAPVD1,FC=0.06,p=0.711683286 GAPVD1,FC=-0.90,p=4.5e-07 MAPKAP1,FC=0.31,p=0.001212616 PBX3,FC=-0.73,p=1.33e-06 LMX1B,FC=-0.17,p=0.333386114 ZBTB43,FC=-0.60,p=0.020485784 RALGPS1,FC=0.05,p=0.821097897 ANGPTL2,FC=-0.30,p=0.026009805 ZNF79,FC=0.38,p=0.080443637


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=-0.37,p=3.47e-07 TNC,FC=0.09,p=0.525236792 TNC,FC=0.79,p=7.79e-06 DEC1,FC=-0.62,p=1.06e-07 PAPPA,FC=0.46,p=0.000175948 PAPPA,FC=0.26,p=0.036403225 ASTN2,FC=0.09,p=0.443266051 ASTN2,FC=-0.05,p=0.695669017 ASTN2,FC=0.19,p=0.159416122 TRIM32,FC=-0.01,p=0.775105169 TLR4,FC=-0.60,p=1.69e-12 DBC1,FC=-0.53,p=9.71e-06 CDK5RAP2,FC=-0.24,p=0.02756285 MEGF9,FC=0.48,p=0.008861296 MEGF9,FC=-0.42,p=1.75e-05 FBXW2,FC=-0.25,p=0.000230098 FBXW2,FC=0.22,p=3.51e-07 PSMD5,FC=0.32,p=3.99e-09 TRAF1,FC=-0.13,p=0.023997578 C5,FC=-0.35,p=0.015923002 CEP110,FC=-0.54,p=3.99e-11 RAB14,FC=-0.09,p=0.241862443 RAB14,FC=-0.75,p=6.67e-24 RAB14,FC=-0.23,p=9.59e-05 GSN,FC=0.14,p=0.422278902 GSN,FC=-0.97,p=9.41e-29 STOM,FC=-1.26,p=2.94e-52 STOM,FC=-0.43,p=3.26e-05 STOM,FC=-0.79,p=3.93e-07 NDUFA8,FC=-0.18,p=0.000920321 LHX6,FC=-1.01,p=4.04e-23 PTGS1,FC=-0.08,p=0.460544986 PTGS1,FC=-0.24,p=0.000224295 PTGS1,FC=-0.23,p=0.000961561 PDCL,FC=-0.19,p=0.000470653 PDCL,FC=-0.19,p=0.021310946 RC3H2,FC=-0.08,p=0.233407654 RC3H2,FC=0.07,p=0.236335957 ZBTB6,FC=0.16,p=0.18131859 RABGAP1,FC=-0.56,p=2.49e-24 RABGAP1,FC=-0.40,p=3.33e-12 RABGAP1,FC=0.12,p=0.30267631 LHX2,FC=-0.30,p=0.062147577 LHX2,FC=0.32,p=0.051705094 PSMB7,FC=0.16,p=0.002376865 GPR144,FC=0.96,p=5.19e-13 NR5A1,FC=0.67,p=3.5e-08 NR6A1,FC=0.18,p=0.091316081 NR6A1,FC=0.25,p=0.064832466 NR6A1,FC=-0.05,p=0.600644114 OLFML2A,FC=-1.23,p=3.67e-44 ARPC5L,FC=0.47,p=1.78e-17 GOLGA1,FC=-0.19,p=1.53e-05 GOLGA1,FC=0.25,p=3.95e-06 PPP6C,FC=-0.09,p=0.06131648 PPP6C,FC=-0.07,p=0.132655285 RABEPK,FC=0.06,p=0.342884279 HSPA5,FC=0.92,p=8.23e-60 GAPVD1,FC=-0.58,p=1.02e-24 GAPVD1,FC=0.11,p=0.06680727 GAPVD1,FC=0.02,p=0.631739451 MAPKAP1,FC=0.31,p=9.68e-08 PBX3,FC=-0.12,p=0.051445004 FAM125B,FC=-0.73,p=4.96e-17 FAM125B,FC=-1.27,p=3.06e-56 FAM125B,FC=-2.25,p=9.34e-47 LMX1B,FC=-0.18,p=0.022398787 ZBTB43,FC=0.14,p=0.016395584 ZBTB43,FC=-0.11,p=0.09372422 RALGPS1,FC=0.45,p=0.000677857 RALGPS1,FC=-0.21,p=0.056991944 ANGPTL2,FC=-0.16,p=0.060875091 ANGPTL2,FC=0.33,p=0.000438286 ANGPTL2,FC=0.11,p=0.306638944 SLC2A8,FC=-0.20,p=0.100363138 ZNF79,FC=0.01,p=0.961268206 ZNF79,FC=0.11,p=0.081606277

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=-1.59,p=7.09e-31 TNC,FC=2.01,p=2.59e-38 TNC,FC=2.45,p=1.54e-83 DEC1,FC=-0.02,p=0.823357176 PAPPA,FC=5.65,p=7.59e-125 PAPPA,FC=2.57,p=1.35e-53 ASTN2,FC=1.66,p=6.45e-36 ASTN2,FC=4.28,p=1.08e-96 ASTN2,FC=-1.17,p=3.35e-08 TRIM32,FC=-0.23,p=0.001191135 TLR4,FC=-1.59,p=7.78e-44 DBC1,FC=-1.99,p=9.93e-25 CDK5RAP2,FC=1.10,p=5.05e-45 MEGF9,FC=2.78,p=1.39e-42 MEGF9,FC=-2.43,p=1.86e-86 FBXW2,FC=-0.98,p=4e-28 FBXW2,FC=1.41,p=5.33e-44 PSMD5,FC=0.24,p=0.000307774 TRAF1,FC=0.51,p=7.65e-17 C5,FC=-1.27,p=5.09e-24 CEP110,FC=-1.83,p=1.14e-26 RAB14,FC=-2.24,p=9.92e-80 RAB14,FC=1.34,p=5.34e-42 RAB14,FC=-2.57,p=6.03e-92 GSN,FC=-0.06,p=0.590321095 GSN,FC=-1.62,p=1.32e-65 STOM,FC=-6.07,p=2.87e-185 STOM,FC=-2.77,p=1.3e-85 STOM,FC=4.44,p=4.98e-84 NDUFA8,FC=-3.23,p=1.28e-97 LHX6,FC=-0.97,p=1.22e-19 PTGS1,FC=2.54,p=9.35e-70 PTGS1,FC=-2.79,p=4.82e-100 PTGS1,FC=0.92,p=5.03e-26 PDCL,FC=-1.32,p=4.52e-27 PDCL,FC=2.12,p=5.11e-97 RC3H2,FC=-0.42,p=0.000129782 RC3H2,FC=-0.87,p=2e-17 ZBTB6,FC=-0.94,p=5.85e-13 RABGAP1,FC=-2.09,p=3.44e-79 RABGAP1,FC=-3.13,p=6.44e-125 RABGAP1,FC=2.41,p=7.05e-57 LHX2,FC=1.59,p=7.7e-27 LHX2,FC=4.36,p=4.33e-100 PSMB7,FC=-1.65,p=1.08e-42 GPR144,FC=3.43,p=7.17e-71 NR5A1,FC=5.62,p=5.46e-105 NR6A1,FC=3.65,p=1.19e-97 NR6A1,FC=-2.13,p=5.54e-37 NR6A1,FC=3.88,p=7.85e-130 OLFML2A,FC=-0.70,p=2.26e-12 ARPC5L,FC=-5.15,p=1.49e-101 GOLGA1,FC=2.55,p=1.29e-100 GOLGA1,FC=0.50,p=1.78e-14 PPP6C,FC=-4.91,p=3.26e-119 PPP6C,FC=-0.85,p=9.57e-32 RABEPK,FC=1.77,p=7.17e-34 HSPA5,FC=-3.16,p=2.28e-85 GAPVD1,FC=-0.68,p=5.05e-40 GAPVD1,FC=1.67,p=1.08e-70 GAPVD1,FC=-4.76,p=4.96e-148 MAPKAP1,FC=-4.47,p=4.23e-78 PBX3,FC=-0.60,p=1.98e-15 FAM125B,FC=-4.42,p=1.54e-84 FAM125B,FC=-1.55,p=2.06e-58 FAM125B,FC=-3.36,p=4.55e-75 LMX1B,FC=4.53,p=1.23e-135 ZBTB43,FC=0.93,p=3.91e-15 ZBTB43,FC=0.06,p=0.58847964 RALGPS1,FC=-0.93,p=4.99e-07 RALGPS1,FC=1.57,p=3.35e-63 ANGPTL2,FC=-0.78,p=2.03e-22 ANGPTL2,FC=0.63,p=1.45e-10 ANGPTL2,FC=0.90,p=2.45e-12 SLC2A8,FC=-0.17,p=0.237421023 ZNF79,FC=-1.00,p=4.08e-12 ZNF79,FC=-2.25,p=3.08e-53


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=-0.33,p=0.039985161 TNC,FC=-1.18,p=3.56e-07 TNC,FC=0.58,p=0.010245751 TNC,FC=0.34,p=0.07265986 TNC,FC=-0.68,p=0.00023342 DEC1,FC=0.63,p=0.000424165 PAPPA,FC=0.37,p=0.029660693 PAPPA,FC=-0.46,p=0.01549565 PAPPA,FC=-0.71,p=0.000178738 PAPPA,FC=-0.24,p=0.19000577 PAPPA,FC=-1.07,p=1.39e-06 PAPPA,FC=0.20,p=0.261297061 PAPPA,FC=0.59,p=0.001029133 PAPPA,FC=-0.40,p=0.022208729 PAPPA,FC=0.21,p=0.265952058 PAPPA,FC=-0.48,p=0.014186449 PAPPA,FC=0.09,p=0.662002726 PAPPA,FC=-0.18,p=0.280558744 ASTN2,FC=-0.07,p=0.64952128 ASTN2,FC=0.33,p=0.141757492 ASTN2,FC=-0.06,p=0.664057385 ASTN2,FC=0.47,p=0.021242917 TRIM32,FC=0.12,p=0.186897583 TRIM32,FC=0.32,p=6.47e-07 TLR4,FC=-1.60,p=6.51e-19 TLR4,FC=-1.15,p=4.25e-07 TLR4,FC=-0.67,p=7.05e-07 TLR4,FC=-1.52,p=1.27e-16 DBC1,FC=0.16,p=0.489222534 DBC1,FC=0.10,p=0.590732989 CDK5RAP2,FC=-0.16,p=0.099035961 CDK5RAP2,FC=-0.01,p=0.960476126 CDK5RAP2,FC=-0.10,p=0.628322374 CDK5RAP2,FC=0.35,p=0.017401425 MEGF9,FC=-0.45,p=0.000524435 MEGF9,FC=-1.01,p=5.02e-16 FBXW2,FC=0.01,p=0.973161222 FBXW2,FC=-0.64,p=3.19e-21 FBXW2,FC=-0.93,p=1.29e-16 FBXW2,FC=-0.11,p=0.040438322 PSMD5,FC=0.23,p=8.48e-05 PSMD5,FC=-0.41,p=0.000557876 LOC253039,FC=-0.07,p=0.636630005 LOC253039,FC=0.74,p=2.87e-05 LOC253039,FC=0.19,p=0.278675023 PHF19,FC=-0.06,p=0.488590407 PHF19,FC=0.72,p=3.79e-07 PHF19,FC=0.59,p=4.15e-05 TRAF1,FC=0.15,p=0.226873471 TRAF1,FC=0.03,p=0.827953677 C5,FC=-0.61,p=0.001022271 CEP110,FC=-1.39,p=2.37e-15 CEP110,FC=-0.31,p=0.000908449 RAB14,FC=-0.63,p=1.61e-10 RAB14,FC=-0.09,p=0.241483475 RAB14,FC=-0.97,p=1.72e-17 GSN,FC=-0.57,p=6.05e-06 GSN,FC=0.60,p=0.020378014 STOM,FC=-1.32,p=5.93e-27 STOM,FC=-1.22,p=1.27e-34 STOM,FC=-0.61,p=0.006354236 GGTA1,FC=-1.47,p=1.55e-24 DAB2IP,FC=-0.69,p=4.17e-11 DAB2IP,FC=-0.14,p=0.493925498 TTLL11,FC=-0.19,p=0.274416858 TTLL11,FC=-0.96,p=7.95e-11 NDUFA8,FC=0.17,p=0.026611526 MORN5,FC=-1.10,p=1.06e-07 LHX6,FC=-0.56,p=1.07e-06 LHX6,FC=-0.17,p=0.228883763 RBM18,FC=-0.07,p=0.30548631 MRRF,FC=0.31,p=0.000121913 PTGS1,FC=-1.00,p=1.26e-07 PTGS1,FC=-0.17,p=0.129783815 PTGS1,FC=-0.98,p=3.88e-16 PTGS1,FC=-0.16,p=0.108899695 OR1J2,FC=0.75,p=0.000455774 OR1J4,FC=0.04,p=0.863287432 OR1Q1,FC=0.37,p=0.055455882 PDCL,FC=0.18,p=0.00883235 PDCL,FC=-0.87,p=5.69e-13 RC3H2,FC=-0.08,p=0.463717045 RC3H2,FC=-0.47,p=3.88e-08 RC3H2,FC=-0.53,p=1.12e-06 RC3H2,FC=-0.57,p=0.001904296 RC3H2,FC=-0.08,p=0.394639949 ZBTB6,FC=0.17,p=0.249308343 ZBTB26,FC=0.27,p=0.082191753 RABGAP1,FC=-0.62,p=2.44e-16 RABGAP1,FC=-0.38,p=0.012548329 RABGAP1,FC=-0.05,p=0.454234257 C9orf45,FC=0.25,p=0.008807965 STRBP,FC=0.25,p=0.143733914 STRBP,FC=0.67,p=3.28e-20 STRBP,FC=0.95,p=3.08e-27 STRBP,FC=0.03,p=0.916995967 CRB2,FC=0.13,p=0.507102309 DENND1A,FC=-0.08,p=0.381402741 LHX2,FC=0.58,p=0.004346417 LHX2,FC=0.96,p=0.000167453 NEK6,FC=0.19,p=0.186718095 NEK6,FC=-0.28,p=0.132059521 NEK6,FC=0.49,p=1.35e-07 NEK6,FC=0.47,p=9.89e-10 PSMB7,FC=0.07,p=0.280944641 PSMB7,FC=-0.91,p=1.37e-05 LOC100129034,FC=0.00,p=0.962056631 LOC100129034,FC=0.64,p=0.00064362 GPR144,FC=-0.04,p=0.79680442 NR5A1,FC=-0.06,p=0.736750284 NR6A1,FC=-0.03,p=0.855697605 NR6A1,FC=0.33,p=0.04526594 NR6A1,FC=0.18,p=0.306148773 OLFML2A,FC=-1.22,p=1.43e-13 WDR38,FC=0.42,p=0.07093387 ARPC5L,FC=-0.09,p=0.246372481 ARPC5L,FC=0.23,p=0.000622301 ARPC5L,FC=0.36,p=9.83e-08 ARPC5L,FC=0.25,p=0.000938025 GOLGA1,FC=0.01,p=0.910210404 GOLGA1,FC=0.36,p=0.057107175 GOLGA1,FC=0.56,p=2.3e-14 SCAI,FC=0.17,p=0.162607928 PPP6C,FC=0.05,p=0.493384397 PPP6C,FC=-0.10,p=0.094863696 RABEPK,FC=0.64,p=0.000875034 RABEPK,FC=0.04,p=0.592547512 HSPA5,FC=0.34,p=7.37e-06 HSPA5,FC=-0.39,p=2.77e-05 GAPVD1,FC=-0.52,p=6.38e-16 GAPVD1,FC=-0.04,p=0.719035182 GAPVD1,FC=0.28,p=0.00016146 MAPKAP1,FC=-0.09,p=0.160928034 MAPKAP1,FC=-0.03,p=0.641428018 MAPKAP1,FC=0.37,p=0.007816579 MAPKAP1,FC=0.78,p=1.47e-12 MAPKAP1,FC=-0.35,p=0.001121779 PBX3,FC=-0.21,p=0.014404601 PBX3,FC=0.13,p=0.486392444 FAM125B,FC=-0.03,p=0.850924137 FAM125B,FC=-0.28,p=0.106837204 FAM125B,FC=-0.90,p=1.63e-16 FAM125B,FC=-2.02,p=1.31e-18 LMX1B,FC=-0.29,p=0.080063918 ZBTB43,FC=-0.72,p=1.99e-16 ZBTB43,FC=-0.02,p=0.841251578 ZBTB34,FC=-0.38,p=2.07e-07 RALGPS1,FC=0.23,p=0.21321075 RALGPS1,FC=-0.38,p=0.006322776 RALGPS1,FC=0.47,p=6.96e-07 RALGPS1,FC=0.02,p=0.853246648 ANGPTL2,FC=0.13,p=0.26973558 ANGPTL2,FC=0.15,p=0.268024274 ANGPTL2,FC=0.06,p=0.612658537 GARNL3,FC=-0.38,p=0.000641884 GARNL3,FC=-0.37,p=0.039290321 GARNL3,FC=0.74,p=1.33e-07 SLC2A8,FC=-0.11,p=0.33947246 SLC2A8,FC=-0.59,p=6.84e-06 ZNF79,FC=0.04,p=0.67207299 ZNF79,FC=0.22,p=0.106178722 LRSAM1,FC=0.42,p=0.000835866 LRSAM1,FC=0.04,p=0.750527909

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=-0.66,p=0.000307346 TNC,FC=-1.09,p=3.25e-05 TNC,FC=0.42,p=0.073939541 TNC,FC=0.97,p=3.11e-06 TNC,FC=-0.29,p=0.116746632 DEC1,FC=0.84,p=6.68e-05 PAPPA,FC=0.97,p=3.36e-06 PAPPA,FC=-0.56,p=0.004518886 PAPPA,FC=-0.89,p=2.39e-06 PAPPA,FC=0.05,p=0.733599806 PAPPA,FC=-1.92,p=7.92e-11 PAPPA,FC=0.32,p=0.121937184 PAPPA,FC=1.39,p=1.91e-10 PAPPA,FC=-0.46,p=0.006336065 PAPPA,FC=0.72,p=0.000425422 PAPPA,FC=-0.60,p=0.009219408 PAPPA,FC=-0.11,p=0.630240027 PAPPA,FC=-0.22,p=0.232018278 ASTN2,FC=0.01,p=0.940767721 ASTN2,FC=0.62,p=0.014947017 ASTN2,FC=-0.02,p=0.943948409 ASTN2,FC=1.24,p=6.97e-08 TRIM32,FC=0.06,p=0.607113433 TRIM32,FC=0.60,p=1.3e-11 TLR4,FC=-2.31,p=1.59e-21 TLR4,FC=-2.02,p=9.14e-14 TLR4,FC=-0.91,p=6.35e-10 TLR4,FC=-2.03,p=1.32e-17 DBC1,FC=0.14,p=0.566734603 DBC1,FC=0.03,p=0.894140513 CDK5RAP2,FC=0.33,p=0.021369143 CDK5RAP2,FC=0.70,p=3.26e-06 CDK5RAP2,FC=-0.42,p=0.011263591 CDK5RAP2,FC=0.57,p=0.000264421 MEGF9,FC=-0.69,p=7.58e-05 MEGF9,FC=-1.06,p=3.04e-14 FBXW2,FC=0.05,p=0.761919615 FBXW2,FC=-0.78,p=1.43e-17 FBXW2,FC=-1.11,p=9.87e-20 FBXW2,FC=0.16,p=0.003910081 PSMD5,FC=0.32,p=0.000437998 PSMD5,FC=-0.49,p=4.1e-06 LOC253039,FC=-0.67,p=0.000192019 LOC253039,FC=1.36,p=5.2e-09 LOC253039,FC=0.22,p=0.257343205 PHF19,FC=0.10,p=0.328921698 PHF19,FC=0.59,p=3.99e-06 PHF19,FC=0.29,p=0.073459151 TRAF1,FC=0.28,p=0.034796164 TRAF1,FC=0.12,p=0.304590807 C5,FC=-1.78,p=4.87e-35 CEP110,FC=-2.29,p=4.15e-16 CEP110,FC=-0.11,p=0.280131564 RAB14,FC=-0.53,p=7.07e-08 RAB14,FC=0.06,p=0.530535791 RAB14,FC=-1.18,p=2.29e-23 GSN,FC=-0.12,p=0.42581535 GSN,FC=0.30,p=0.359679601 STOM,FC=-1.50,p=4.78e-22 STOM,FC=-1.48,p=6.96e-34 STOM,FC=-1.31,p=7.9e-07 GGTA1,FC=-2.12,p=6.64e-30 DAB2IP,FC=-0.12,p=0.410073195 DAB2IP,FC=0.26,p=0.301595671 TTLL11,FC=0.44,p=0.007116458 TTLL11,FC=-0.59,p=4.43e-06 NDUFA8,FC=0.15,p=0.142427347 MORN5,FC=-1.19,p=1.33e-06 LHX6,FC=-0.42,p=0.014980442 LHX6,FC=-0.18,p=0.290598983 RBM18,FC=0.19,p=0.011342985 MRRF,FC=0.69,p=1.27e-16 PTGS1,FC=-1.07,p=1.25e-07 PTGS1,FC=-0.34,p=0.010740377 PTGS1,FC=-1.18,p=3.58e-16 PTGS1,FC=-0.30,p=0.015177358 OR1J2,FC=1.15,p=2.9e-05 OR1J4,FC=0.44,p=0.070126589 OR1Q1,FC=1.06,p=3.96e-07 PDCL,FC=0.15,p=0.078066713 PDCL,FC=-1.15,p=2.4e-11 RC3H2,FC=-0.33,p=0.021785496 RC3H2,FC=-0.47,p=8.1e-07 RC3H2,FC=-0.37,p=0.000409024 RC3H2,FC=-0.78,p=0.00033956 RC3H2,FC=0.34,p=0.002993073 ZBTB6,FC=0.25,p=0.108303435 ZBTB26,FC=0.43,p=0.022139938 RABGAP1,FC=-0.61,p=2.39e-11 RABGAP1,FC=-0.42,p=0.006296232 RABGAP1,FC=0.18,p=0.01299736 C9orf45,FC=0.76,p=7.99e-11 STRBP,FC=0.13,p=0.561258663 STRBP,FC=0.90,p=2.69e-17 STRBP,FC=1.49,p=1.33e-29 STRBP,FC=-0.48,p=0.068179044 CRB2,FC=0.49,p=0.030095656 DENND1A,FC=0.49,p=3.83e-07 LHX2,FC=1.45,p=4.6e-08 LHX2,FC=2.20,p=1.71e-10 NEK6,FC=0.70,p=3.64e-06 NEK6,FC=-0.33,p=0.111063182 NEK6,FC=-0.02,p=0.848972754 NEK6,FC=-0.21,p=0.037752724 PSMB7,FC=0.19,p=0.023505908 PSMB7,FC=-1.87,p=3.26e-13 LOC100129034,FC=-0.50,p=4.96e-07 LOC100129034,FC=0.49,p=0.019634928 GPR144,FC=0.13,p=0.439688691 NR5A1,FC=-0.12,p=0.541195842 NR6A1,FC=0.05,p=0.764132338 NR6A1,FC=0.47,p=0.012583171 NR6A1,FC=0.31,p=0.095171692 OLFML2A,FC=-0.41,p=0.018436746 WDR38,FC=0.19,p=0.469584346 ARPC5L,FC=-0.13,p=0.149404624 ARPC5L,FC=0.42,p=4.13e-07 ARPC5L,FC=0.62,p=3e-16 ARPC5L,FC=0.58,p=2.85e-10 GOLGA1,FC=-0.08,p=0.325161451 GOLGA1,FC=-0.26,p=0.187926657 GOLGA1,FC=0.81,p=6.46e-20 SCAI,FC=0.60,p=8.97e-08 PPP6C,FC=0.42,p=1.02e-07 PPP6C,FC=0.11,p=0.057409793 RABEPK,FC=1.16,p=1.03e-08 RABEPK,FC=0.11,p=0.282807517 HSPA5,FC=0.27,p=0.000374635 HSPA5,FC=-0.65,p=2.25e-07 GAPVD1,FC=-0.50,p=1.08e-11 GAPVD1,FC=-0.28,p=0.004936062 GAPVD1,FC=0.54,p=4.88e-12 MAPKAP1,FC=0.06,p=0.486030332 MAPKAP1,FC=0.20,p=0.002485818 MAPKAP1,FC=0.78,p=6.99e-10 MAPKAP1,FC=1.01,p=2.91e-16 MAPKAP1,FC=-0.15,p=0.196669514 PBX3,FC=-0.37,p=0.000453321 PBX3,FC=0.59,p=0.002815007 FAM125B,FC=0.20,p=0.328221361 FAM125B,FC=-0.20,p=0.308764895 FAM125B,FC=-1.28,p=8.2e-16 FAM125B,FC=-3.07,p=1.59e-29 LMX1B,FC=-0.31,p=0.092900564 ZBTB43,FC=-0.48,p=3.02e-07 ZBTB43,FC=-0.02,p=0.768914591 ZBTB34,FC=-0.09,p=0.304315171 RALGPS1,FC=0.51,p=0.014936234 RALGPS1,FC=-1.15,p=1.12e-10 RALGPS1,FC=0.83,p=3.95e-16 RALGPS1,FC=0.08,p=0.624005282 ANGPTL2,FC=0.32,p=0.013268376 ANGPTL2,FC=0.42,p=0.011539175 ANGPTL2,FC=0.35,p=0.010795267 GARNL3,FC=0.01,p=0.881427423 GARNL3,FC=-0.48,p=0.021430421 GARNL3,FC=1.05,p=8.09e-12 SLC2A8,FC=0.11,p=0.359849185 SLC2A8,FC=-0.39,p=0.009621002 ZNF79,FC=0.17,p=0.081941406 ZNF79,FC=-0.11,p=0.466464274 LRSAM1,FC=0.76,p=2.68e-09 LRSAM1,FC=-0.29,p=0.072693127


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      PAPPA,FC=1.82,p=0.000589657 PAPPA,FC=0.65,p=0.178813094 TRIM32,FC=0.49,p=0.009953476 FBXW2,FC=0.20,p=0.307331722 FBXW2,FC=0.58,p=0.082158948 PSMD5,FC=0.62,p=0.006420153 PSMD5,FC=0.87,p=0.000984724 TRAF1,FC=0.84,p=0.004461617 C5,FC=-0.11,p=0.858153222 RAB14,FC=0.03,p=0.927988336 RAB14,FC=-0.60,p=0.011897917 GSN,FC=-0.60,p=0.084815076 MRRF,FC=1.00,p=0.000121879 PTGS1,FC=-0.02,p=0.94439381 PTGS1,FC=0.65,p=0.009338887 PDCL,FC=-0.35,p=0.262060104 STRBP,FC=0.63,p=0.047562955 LHX2,FC=1.31,p=0.00594527 NEK6,FC=0.38,p=0.121598789 PSMB7,FC=0.53,p=0.045245466 NR6A1,FC=0.57,p=0.02117096 GOLGA1,FC=0.19,p=0.376534653 PPP6C,FC=-0.04,p=0.826283774 HSPA5,FC=-0.08,p=0.844088376 HSPA5,FC=-0.62,p=0.180116868 PBX3,FC=-0.47,p=0.156179148 SLC2A8,FC=0.19,p=0.412432411

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      PAPPA,FC=1.69,p=0.002897879 PAPPA,FC=0.18,p=0.690219684 TRIM32,FC=0.73,p=0.013851319 FBXW2,FC=-0.02,p=0.930162174 FBXW2,FC=0.87,p=0.013443599 PSMD5,FC=0.66,p=0.009176778 PSMD5,FC=0.75,p=0.014264169 TRAF1,FC=0.41,p=0.114323259 C5,FC=-0.75,p=0.098423659 RAB14,FC=-0.90,p=0.007126749 RAB14,FC=-0.58,p=0.022051247 GSN,FC=-0.57,p=0.16427076 MRRF,FC=1.15,p=0.000945083 PTGS1,FC=-0.36,p=0.250180217 PTGS1,FC=0.50,p=0.034758307 PDCL,FC=0.03,p=0.944443646 STRBP,FC=0.94,p=0.009837747 LHX2,FC=2.44,p=3.57e-06 NEK6,FC=-0.28,p=0.308782316 PSMB7,FC=0.91,p=0.002488609 NR6A1,FC=0.57,p=0.051086917 GOLGA1,FC=-0.20,p=0.418730914 PPP6C,FC=0.06,p=0.763868255 HSPA5,FC=0.35,p=0.510857461 HSPA5,FC=0.17,p=0.740527102 PBX3,FC=-1.07,p=0.002060031 SLC2A8,FC=0.13,p=0.684819827


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=0.08,p=0.046009861 TNFSF8,FC=-0.11,p=0.000497739 TNC,FC=0.41,p=0.00531625 PAPPA,FC=0.10,p=0.002663325 PAPPA,FC=0.07,p=0.097916768 ASTN2,FC=-0.04,p=0.205030644 TRIM32,FC=0.05,p=0.031794608 TRIM32,FC=-0.01,p=0.533687845 TLR4,FC=-0.23,p=2.54e-06 DBC1,FC=0.05,p=0.09539765 DBC1,FC=-0.07,p=0.445947676 CDK5RAP2,FC=-0.04,p=0.514268819 PSMD5,FC=-0.03,p=0.169570419 PSMD5,FC=0.02,p=0.355674912 PSMD5,FC=0.03,p=0.390999477 PHF19,FC=0.01,p=0.702756009 TRAF1,FC=0.02,p=0.341505149 C5,FC=-0.23,p=0.252733789 RAB14,FC=-0.20,p=4.62e-05 GSN,FC=-0.09,p=0.238862441 STOM,FC=-0.19,p=3.51e-05 GGTA1,FC=-0.02,p=0.404602519 GGTA1,FC=-0.38,p=0.000537945 DAB2IP,FC=-0.29,p=9.32e-07 NDUFA8,FC=0.13,p=0.030133066 LHX6,FC=-0.11,p=0.0004355 RBM18,FC=0.12,p=1.73e-07 RBM18,FC=-0.02,p=0.619106069 MRRF,FC=-0.02,p=0.727164663 PTGS1,FC=-0.28,p=8.06e-08 PDCL,FC=0.00,p=0.949906438 ZBTB26,FC=0.01,p=0.850479417 RABGAP1,FC=0.00,p=0.698977533 STRBP,FC=0.18,p=0.035083618 STRBP,FC=0.11,p=0.000108791 LHX2,FC=0.16,p=0.000382846 NEK6,FC=0.02,p=0.29307841 PSMB7,FC=-0.02,p=0.348959969 PSMB7,FC=0.14,p=0.025408167 NR5A1,FC=0.03,p=0.438930888 NR6A1,FC=-0.03,p=0.048001262 OLFML2A,FC=0.03,p=0.745992702 ARPC5L,FC=0.14,p=0.030675283 GOLGA1,FC=0.00,p=0.83503209 PPP6C,FC=-0.12,p=3.87e-05 HSPA5,FC=0.28,p=0.000173901 MAPKAP1,FC=-0.16,p=2.68e-05 MAPKAP1,FC=-0.00,p=0.983196897 PBX3,FC=-0.02,p=0.454300885 PBX3,FC=-0.08,p=0.095717016 PBX3,FC=-0.01,p=0.798332516 LMX1B,FC=0.05,p=0.569421212 ZBTB34,FC=-0.13,p=0.015911892 RALGPS1,FC=0.04,p=0.33437318 ANGPTL2,FC=-0.13,p=0.064871975 GARNL3,FC=0.03,p=0.574577952 GARNL3,FC=-0.05,p=0.401046865 SLC2A8,FC=-0.05,p=0.156625932 ZNF79,FC=-0.17,p=0.007371601 LRSAM1,FC=-0.10,p=0.057312901

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TNFSF8,FC=0.07,p=0.079959825 TNFSF8,FC=-0.11,p=0.002052707 TNC,FC=0.55,p=0.000613881 PAPPA,FC=0.08,p=0.009847199 PAPPA,FC=0.07,p=0.05892827 ASTN2,FC=-0.05,p=0.244291626 TRIM32,FC=0.06,p=0.071289398 TRIM32,FC=-0.02,p=0.430795026 TLR4,FC=-0.22,p=7.03e-06 DBC1,FC=0.05,p=0.024307184 DBC1,FC=-0.10,p=0.164558443 CDK5RAP2,FC=0.27,p=0.17856975 PSMD5,FC=-0.02,p=0.365085464 PSMD5,FC=0.02,p=0.267131069 PSMD5,FC=0.05,p=0.199170069 PHF19,FC=-0.00,p=0.897515858 TRAF1,FC=0.00,p=0.826309453 C5,FC=-0.60,p=4.69e-05 RAB14,FC=-0.17,p=0.00225299 GSN,FC=-0.14,p=0.057641882 STOM,FC=-0.17,p=0.000624511 GGTA1,FC=-0.05,p=0.053515518 GGTA1,FC=-0.50,p=8.38e-07 DAB2IP,FC=-0.20,p=0.01224695 NDUFA8,FC=0.31,p=0.000250061 LHX6,FC=-0.09,p=0.05675092 RBM18,FC=0.16,p=8.57e-07 RBM18,FC=0.02,p=0.599133592 MRRF,FC=0.06,p=0.276669667 PTGS1,FC=-0.32,p=1.18e-08 PDCL,FC=-0.00,p=0.847203545 ZBTB26,FC=0.01,p=0.864292739 RABGAP1,FC=0.00,p=0.963265728 STRBP,FC=0.18,p=0.063443488 STRBP,FC=0.17,p=0.000379513 LHX2,FC=0.25,p=0.019634665 NEK6,FC=-0.02,p=0.427268956 PSMB7,FC=-0.02,p=0.272718514 PSMB7,FC=0.33,p=3.16e-05 NR5A1,FC=0.04,p=0.246501403 NR6A1,FC=-0.03,p=0.062966556 OLFML2A,FC=-0.04,p=0.572335659 ARPC5L,FC=0.24,p=3.02e-05 GOLGA1,FC=-0.00,p=0.836954876 PPP6C,FC=-0.12,p=0.002358328 HSPA5,FC=0.22,p=0.001760705 MAPKAP1,FC=-0.08,p=0.167330952 MAPKAP1,FC=-0.00,p=0.90770232 PBX3,FC=-0.02,p=0.368274771 PBX3,FC=-0.15,p=0.006929388 PBX3,FC=-0.04,p=0.215654106 LMX1B,FC=0.11,p=0.333890198 ZBTB34,FC=-0.12,p=0.047885888 RALGPS1,FC=0.02,p=0.633747879 ANGPTL2,FC=-0.16,p=0.003120484 GARNL3,FC=0.03,p=0.578432309 GARNL3,FC=0.01,p=0.88412016 SLC2A8,FC=-0.04,p=0.215151083 ZNF79,FC=-0.17,p=0.03073847 LRSAM1,FC=-0.13,p=0.001975467


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-147,Mean=0.04 hsa-miR-601,Mean=0.72

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-147,Mean=0.12 hsa-miR-601,Mean=0.80

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-147,Mean=0.17 hsa-mir-600,Mean=0.02 hsa-mir-601,Mean=0.12 hsa-mir-181a-2,Mean=-0.01 hsa-mir-181b-2,Mean=0.02

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-147,Mean=0.06 hsa-mir-600,Mean=0.06 hsa-mir-601,Mean=0.11 hsa-mir-181a-2,Mean=-0.12 hsa-mir-181b-2,Mean=-0.10

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

TNFSF8,FC=-0.54,p=5.71e-10 TNC,FC=-0.07,p=0.630235862 TNC,FC=0.83,p=7.86e-07 DEC1,FC=-0.79,p=7.81e-09 PAPPA,FC=0.50,p=0.000144204 PAPPA,FC=0.43,p=0.001182865 ASTN2,FC=0.09,p=0.470496064 ASTN2,FC=0.25,p=0.057648319 ASTN2,FC=0.15,p=0.332986361 TRIM32,FC=-0.09,p=0.088627447 TLR4,FC=-0.49,p=1.81e-07 DBC1,FC=-0.78,p=1.55e-09 CDK5RAP2,FC=-0.23,p=0.016293218 MEGF9,FC=1.22,p=5.99e-09 MEGF9,FC=-0.37,p=9.27e-05 FBXW2,FC=-0.07,p=0.265729701 FBXW2,FC=0.09,p=0.045295078 PSMD5,FC=0.40,p=8.4e-09 TRAF1,FC=-0.32,p=2.14e-07 C5,FC=-0.25,p=0.12657943 CEP110,FC=-0.68,p=1.4e-23 RAB14,FC=0.46,p=1.07e-09 RAB14,FC=-0.66,p=9.26e-22 RAB14,FC=-0.32,p=5.17e-07 GSN,FC=1.05,p=1.14e-09 GSN,FC=-0.93,p=5.64e-21 STOM,FC=-1.20,p=6.41e-46 STOM,FC=-0.28,p=0.006861278 STOM,FC=-0.77,p=0.000148933 NDUFA8,FC=-0.39,p=7e-13 LHX6,FC=-1.17,p=2.4e-23 PTGS1,FC=-0.46,p=0.00079899 PTGS1,FC=-0.36,p=6.03e-09 PTGS1,FC=-0.33,p=6.95e-07 PDCL,FC=-0.22,p=0.000133958 PDCL,FC=-0.22,p=0.002471719 RC3H2,FC=-0.26,p=0.0004217 RC3H2,FC=0.03,p=0.595282258 ZBTB6,FC=0.79,p=5.21e-07 RABGAP1,FC=-0.61,p=4.83e-20 RABGAP1,FC=-0.51,p=4.05e-18 RABGAP1,FC=0.27,p=0.037948212 LHX2,FC=-0.64,p=0.000266809 LHX2,FC=0.35,p=0.061597217 PSMB7,FC=0.01,p=0.911587484 GPR144,FC=1.01,p=4.57e-14 NR5A1,FC=0.68,p=3.62e-05 NR6A1,FC=-0.03,p=0.835222155 NR6A1,FC=0.24,p=0.132634995 NR6A1,FC=-0.46,p=3.6e-05 OLFML2A,FC=-1.25,p=1.04e-32 ARPC5L,FC=0.27,p=3.38e-06 GOLGA1,FC=-0.23,p=2.8e-07 GOLGA1,FC=-0.02,p=0.745194467 PPP6C,FC=-0.03,p=0.513257457 PPP6C,FC=-0.13,p=0.008657145 RABEPK,FC=0.03,p=0.635075487 HSPA5,FC=0.90,p=3.61e-41 GAPVD1,FC=-0.45,p=1.24e-13 GAPVD1,FC=0.23,p=0.000519123 GAPVD1,FC=0.07,p=0.228108776 MAPKAP1,FC=0.29,p=1.01e-07 PBX3,FC=-0.00,p=0.981909099 FAM125B,FC=-0.98,p=1.12e-21 FAM125B,FC=-1.30,p=4.23e-42 FAM125B,FC=-2.56,p=4.89e-38 LMX1B,FC=-0.11,p=0.238670103 ZBTB43,FC=0.29,p=2.49e-05 ZBTB43,FC=-0.32,p=0.000631612 RALGPS1,FC=0.86,p=2.28e-12 RALGPS1,FC=-0.04,p=0.693863195 ANGPTL2,FC=-0.46,p=3.55e-08 ANGPTL2,FC=0.25,p=0.013328006 ANGPTL2,FC=0.07,p=0.510054139 SLC2A8,FC=-0.37,p=0.007426309 ZNF79,FC=-0.06,p=0.656258977 ZNF79,FC=0.05,p=0.463067006

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-78H18, 6/50, 0.12 RP11-78H18, 4/50, 0.08 RP11-445L6, 4/50, 0.08 RP11-445L6, 6/50, 0.12 RP11-382H18, 3/50, 0.06 RP11-382H18, 10/50, 0.2 RP11-58C3, 4/50, 0.08 RP11-58C3, 6/50, 0.12 RP11-67K19, 4/50, 0.08 RP11-67K19, 5/50, 0.1 RP11-388N2, 6/50, 0.12 RP11-388N2, 18/50, 0.36 RP11-451E16, 4/50, 0.08 RP11-451E16, 16/50, 0.32 RP11-574M5, 2/50, 0.04 RP11-574M5, 14/50, 0.28 RP11-28O4, 6/50, 0.12 RP11-28O4, 5/50, 0.1 RP11-360A18, 4/50, 0.08 RP11-360A18, 8/50, 0.16 RP11-165P4, 4/50, 0.08 RP11-165P4, 2/50, 0.04 RP11-477J21, 8/50, 0.16 RP11-477J21, 3/50, 0.06 RP11-429D3, 8/50, 0.16 RP11-429D3, 4/50, 0.08 RP11-137O6, 2/50, 0.04 RP11-137O6, 1/50, 0.02 RP11-417B4, 0/50, 0 RP11-417B4, 4/50, 0.08 RP11-101K10, 14/50, 0.28 RP11-101K10, 2/50, 0.04 RP11-269P11, 13/50, 0.26 RP11-269P11, 2/50, 0.04 RP11-205K6, 10/50, 0.2 RP11-205K6, 2/50, 0.04 RP11-373J8, 14/50, 0.28 RP11-373J8, 2/50, 0.04

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=11748636

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

D9S1776, 10/16, 63% PMID=10987304 D9S1682, 6/12, 50% D9S934, 4/20, 20% PMID=15900585 D9S934, 4/18, 22%

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