IGDB.NSCLC Chromosome View

Chromosome 9
9p24 9p23 9p22 9p21 9p13 9p12 9p11 9q11 9q12 9q13 9q21 9q22 9q31 9q32 9q33 9q34         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
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    Lung Cancer Genes with Experimental Evidence         (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: up-regulation / green : down-regulation / gray : mutation)

CDKN2A, down, 25/101(25%) CDKN2A, up, 57/106(54%) PINX1, 0.53%, 1/189 CDKN2A, 16.96%, 145/855 CDKN2B, 0.53%, 1/189 TEK, 0.99%, 2/202

(Click the gene to hyperlink to gene view.)    

    Gene Expression Microarray Data         (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        HG_U95 (Meyerson, GSE2514)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-0.54,p=0.015567628 MPDZ,FC=-0.83,p=0.001064717 NFIB,FC=-0.55,p=0.000711894 NFIB,FC=-0.79,p=6.03e-09 NFIB,FC=-0.70,p=4.76e-08 NFIB,FC=0.30,p=0.140472868 NFIB,FC=0.06,p=0.600404797 SNAPC3,FC=0.13,p=0.301939833 PSIP1,FC=-0.90,p=0.00048907 PSIP1,FC=-0.81,p=1.01e-10 SH3GL2,FC=-0.41,p=0.080163789 RRAGA,FC=-0.57,p=2.12e-10 RPS6,FC=0.10,p=0.161596013 MLLT3,FC=-0.28,p=0.253049333 IFNB1,FC=0.17,p=0.264722282 IFNW1,FC=0.42,p=0.000341466 IFNA21,FC=0.36,p=0.103814278 IFNA4,FC=0.14,p=0.184854122 IFNA10,FC=0.25,p=0.177822686 IFNA16,FC=0.44,p=0.026630962 IFNA14,FC=-0.10,p=0.563166618 IFNA5,FC=0.16,p=0.377209875 IFNA5,FC=0.29,p=0.225755912 KLHL9,FC=-0.45,p=1.89e-05 IFNA6,FC=0.03,p=0.82811225 IFNA2,FC=0.05,p=0.829542339 IFNA8,FC=0.88,p=4.21e-05 MTAP,FC=0.34,p=0.122490424 CDKN2A,FC=0.91,p=0.003066409 CDKN2B,FC=-0.55,p=0.002133493 CDKN2B,FC=-0.01,p=0.922459296 ELAVL2,FC=0.16,p=0.498993476 ELAVL2,FC=0.45,p=0.001457352 PLAA,FC=-0.30,p=0.251669156 TEK,FC=-3.28,p=1.59e-36 TEK,FC=-1.67,p=5.97e-17

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-0.51,p=0.107356493 MPDZ,FC=-1.04,p=0.00122274 NFIB,FC=-0.92,p=2.46e-05 NFIB,FC=-0.82,p=6.05e-06 NFIB,FC=-0.79,p=7.16e-06 NFIB,FC=0.26,p=0.252379049 NFIB,FC=0.04,p=0.790208504 SNAPC3,FC=0.30,p=0.136992338 PSIP1,FC=-0.08,p=0.739761433 PSIP1,FC=-0.37,p=0.044476259 SH3GL2,FC=-0.30,p=0.350677652 RRAGA,FC=-0.47,p=0.002265727 RPS6,FC=0.21,p=0.037625855 MLLT3,FC=-0.79,p=0.015857695 IFNB1,FC=0.28,p=0.244912401 IFNW1,FC=0.53,p=0.001492532 IFNA21,FC=0.27,p=0.381773248 IFNA4,FC=0.18,p=0.288133297 IFNA10,FC=0.48,p=0.02785679 IFNA16,FC=0.55,p=0.055158251 IFNA14,FC=-0.13,p=0.585034958 IFNA5,FC=0.46,p=0.076449409 IFNA5,FC=1.01,p=0.004280973 KLHL9,FC=-0.71,p=0.000162133 IFNA6,FC=0.06,p=0.801448017 IFNA2,FC=0.43,p=0.188764054 IFNA8,FC=0.82,p=0.006897301 MTAP,FC=0.11,p=0.723535217 CDKN2A,FC=1.74,p=0.000358558 CDKN2B,FC=-0.79,p=0.009620698 CDKN2B,FC=0.09,p=0.675300961 ELAVL2,FC=0.27,p=0.444099714 ELAVL2,FC=0.53,p=0.006780505 PLAA,FC=0.04,p=0.913272686 TEK,FC=-3.93,p=7.69e-23 TEK,FC=-2.49,p=9.7e-17


        HG_U133A (GSE7670, GSE17475, DCLungStudy, GSE4573, GSE10072)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-1.13,p=1.32e-18 MPDZ,FC=-1.33,p=8.01e-25 MPDZ,FC=-0.90,p=5.87e-30 NFIB,FC=-0.57,p=2.23e-07 NFIB,FC=-0.89,p=9.27e-28 NFIB,FC=0.29,p=0.158722401 NFIB,FC=-1.03,p=2.02e-29 NFIB,FC=-0.50,p=1.8e-05 NFIB,FC=-0.70,p=0.000204633 NFIB,FC=-0.87,p=4.26e-16 CER1,FC=-0.22,p=0.000145378 ANKH,FC=0.11,p=0.487976722 SNAPC3,FC=-0.05,p=0.349934087 SNAPC3,FC=0.48,p=1.88e-10 PSIP1,FC=0.04,p=0.690290876 PSIP1,FC=-0.68,p=3.12e-10 PSIP1,FC=-1.17,p=2.07e-41 BNC2,FC=-0.78,p=1.06e-24 CNTLN,FC=-0.74,p=7.58e-09 SH3GL2,FC=-1.75,p=1.67e-24 RRAGA,FC=-0.43,p=1.09e-14 HAUS6,FC=0.51,p=0.001578061 PLIN2,FC=-0.66,p=1.15e-08 DENND4C,FC=-0.34,p=7.26e-05 RPS6,FC=-0.04,p=0.272948424 RPS6,FC=0.22,p=1.75e-06 RPS6,FC=0.02,p=0.484584368 SLC24A2,FC=-0.19,p=0.014688127 MLLT3,FC=-0.19,p=0.021276356 MLLT3,FC=0.00,p=0.98225876 KIAA1797,FC=-0.01,p=0.917598683 IFNB1,FC=-0.54,p=2.84e-07 IFNW1,FC=0.08,p=0.421632662 IFNA21,FC=-0.77,p=9.28e-07 IFNA4,FC=-0.38,p=4.83e-05 IFNA7,FC=-0.45,p=2.84e-08 IFNA10,FC=-0.63,p=1.83e-07 IFNA16,FC=-0.25,p=0.000282474 IFNA17,FC=-0.10,p=0.073076745 IFNA14,FC=-0.38,p=2.04e-08 IFNA5,FC=-0.64,p=4.83e-12 KLHL9,FC=-0.28,p=3.29e-07 KLHL9,FC=-0.43,p=8.18e-09 IFNA6,FC=-0.17,p=0.224700083 IFNA2,FC=-0.13,p=0.382470014 IFNA8,FC=-0.13,p=0.425661661 IFNA1,FC=-0.05,p=0.715907929 MTAP,FC=0.22,p=0.028424319 MTAP,FC=0.75,p=1.97e-05 MTAP,FC=1.03,p=3.25e-09 MTAP,FC=-0.37,p=1.92e-10 C9orf53,FC=-0.55,p=4.47e-08 CDKN2A,FC=0.76,p=6.43e-08 CDKN2A,FC=1.20,p=2.22e-16 CDKN2A,FC=0.13,p=0.240013036 CDKN2B,FC=0.60,p=0.000128255 ELAVL2,FC=-0.17,p=0.249683538 C9orf82,FC=0.39,p=1.45e-08 PLAA,FC=0.06,p=0.394902837 PLAA,FC=-0.11,p=0.260132573 IFT74,FC=-0.39,p=0.047847696 IFT74,FC=-0.75,p=6.76e-07 LRRC19,FC=-0.48,p=0.000651646 TEK,FC=-0.86,p=2.76e-14 TEK,FC=-2.70,p=1.33e-106 MOBKL2B,FC=-0.30,p=9.57e-06

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-3.06,p=2.32e-70 MPDZ,FC=-0.80,p=4.16e-17 MPDZ,FC=-5.24,p=5.59e-93 NFIB,FC=-3.08,p=3.06e-71 NFIB,FC=-1.61,p=4.4e-80 NFIB,FC=-1.25,p=2.42e-06 NFIB,FC=-5.02,p=3.22e-94 NFIB,FC=-2.39,p=1.81e-38 NFIB,FC=1.91,p=1.25e-32 NFIB,FC=0.45,p=4.65e-12 CER1,FC=-6.77,p=2.97e-104 ANKH,FC=-0.27,p=0.133605856 SNAPC3,FC=-1.10,p=1e-32 SNAPC3,FC=0.66,p=2.94e-07 PSIP1,FC=0.80,p=1.22e-18 PSIP1,FC=-5.92,p=2.05e-56 PSIP1,FC=-0.45,p=3.72e-07 BNC2,FC=-1.09,p=2e-20 CNTLN,FC=0.65,p=0.001644033 SH3GL2,FC=1.34,p=1.13e-38 RRAGA,FC=-1.36,p=9.57e-60 HAUS6,FC=5.35,p=1.37e-95 PLIN2,FC=-2.91,p=2.14e-99 DENND4C,FC=-0.76,p=1.43e-27 RPS6,FC=-2.54,p=8.65e-130 RPS6,FC=-0.86,p=4.16e-60 RPS6,FC=-11.26,p=2.45e-239 SLC24A2,FC=-0.91,p=1.42e-14 MLLT3,FC=-1.25,p=1.68e-23 MLLT3,FC=-2.33,p=2.22e-53 KIAA1797,FC=4.44,p=6.95e-122 IFNB1,FC=4.93,p=1.92e-119 IFNW1,FC=-0.15,p=0.230811573 IFNA21,FC=2.71,p=8.25e-56 IFNA4,FC=-0.68,p=3.61e-12 IFNA7,FC=-3.85,p=3.31e-72 IFNA10,FC=0.61,p=7.17e-08 IFNA16,FC=-0.30,p=0.003843649 IFNA17,FC=0.15,p=0.03143679 IFNA14,FC=0.77,p=9.75e-22 IFNA5,FC=-3.16,p=4.36e-68 KLHL9,FC=-0.52,p=1.72e-07 KLHL9,FC=-2.05,p=8.68e-30 IFNA6,FC=1.57,p=1.46e-28 IFNA2,FC=3.24,p=1.97e-64 IFNA8,FC=0.32,p=0.011532239 IFNA1,FC=-0.07,p=0.598522195 MTAP,FC=4.78,p=4.85e-75 MTAP,FC=4.30,p=1.24e-93 MTAP,FC=0.97,p=2.57e-10 MTAP,FC=-1.38,p=4.72e-58 C9orf53,FC=0.22,p=0.142427995 CDKN2A,FC=2.13,p=6.98e-59 CDKN2A,FC=3.18,p=1.05e-58 CDKN2A,FC=4.55,p=2.54e-105 CDKN2B,FC=4.16,p=5.91e-72 ELAVL2,FC=0.77,p=9.6e-10 C9orf82,FC=-0.97,p=2.72e-14 PLAA,FC=2.46,p=4.34e-90 PLAA,FC=5.26,p=1.15e-117 IFT74,FC=4.18,p=2.27e-92 IFT74,FC=3.06,p=1.11e-68 LRRC19,FC=2.93,p=5.6e-63 TEK,FC=-1.44,p=1.43e-21 TEK,FC=-5.96,p=1.84e-101 MOBKL2B,FC=-0.21,p=0.011287561


        HG_U133_Plus2 (GSE3141, GSE10245, GSE10445, GSE12667, GSE10799, GSE16538, GSE7307, GSE3526)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-1.82,p=4.05e-20 C9orf150,FC=-0.18,p=0.068220618 C9orf150,FC=-1.10,p=7.08e-14 MPDZ,FC=-0.70,p=2.32e-10 MPDZ,FC=-1.15,p=2.81e-13 NFIB,FC=-0.48,p=1.28e-05 NFIB,FC=-0.81,p=2.83e-05 NFIB,FC=-0.93,p=2.27e-17 NFIB,FC=-0.37,p=0.003026857 NFIB,FC=-0.56,p=0.000570879 NFIB,FC=-0.69,p=0.002390386 NFIB,FC=-0.68,p=7.34e-10 NFIB,FC=-0.09,p=0.703139327 NFIB,FC=-1.13,p=9.57e-06 ZDHHC21,FC=0.35,p=0.114269238 ZDHHC21,FC=0.46,p=0.004356994 ZDHHC21,FC=0.50,p=0.037077334 CER1,FC=0.30,p=0.094151102 FREM1,FC=-1.52,p=2.32e-15 ANKH,FC=-0.46,p=0.003498972 TTC39B,FC=0.11,p=0.531945474 TTC39B,FC=-0.22,p=0.090024889 SNAPC3,FC=0.03,p=0.753966489 SNAPC3,FC=0.26,p=0.037132635 METTL6,FC=0.09,p=0.56911496 PSIP1,FC=-1.00,p=2.35e-21 PSIP1,FC=0.01,p=0.937660035 PSIP1,FC=0.17,p=0.128863883 PSIP1,FC=-0.70,p=2.75e-10 C9orf93,FC=-0.20,p=0.176098885 C9orf93,FC=-0.51,p=0.009702982 C9orf93,FC=0.12,p=0.55680383 C9orf93,FC=-0.27,p=0.236807897 C9orf93,FC=-0.14,p=0.303209298 C9orf93,FC=0.18,p=0.260287824 BNC2,FC=-0.25,p=0.080863074 BNC2,FC=-0.12,p=0.280237467 BNC2,FC=-0.57,p=2.13e-08 BNC2,FC=-0.51,p=3.91e-06 BNC2,FC=0.12,p=0.539708055 BNC2,FC=-0.82,p=1.12e-06 QDPR,FC=-0.85,p=4.06e-11 CNTLN,FC=-0.76,p=0.000108542 CNTLN,FC=-1.27,p=1.7e-13 CNTLN,FC=-0.65,p=0.000610058 SH3GL2,FC=-2.10,p=7.9e-18 SH3GL2,FC=-0.43,p=0.025608855 ADAMTSL1,FC=-0.06,p=0.696392787 ADAMTSL1,FC=-0.78,p=8.86e-06 ADAMTSL1,FC=0.36,p=0.123690097 ADAMTSL1,FC=-0.55,p=0.001185413 ADAMTSL1,FC=0.57,p=0.002033339 ADAMTSL1,FC=-0.52,p=0.008106825 FAM154A,FC=0.46,p=0.005174971 RRAGA,FC=-0.33,p=3.31e-08 HAUS6,FC=0.25,p=0.060440673 HAUS6,FC=0.40,p=0.003404339 HAUS6,FC=-0.17,p=0.19657966 PLIN2,FC=-0.61,p=1.78e-05 DENND4C,FC=-0.44,p=4.7e-09 DENND4C,FC=-0.65,p=9.85e-08 DENND4C,FC=-0.71,p=2.44e-14 RPS6,FC=-0.05,p=0.111267543 RPS6,FC=-0.64,p=1.71e-07 RPS6,FC=0.03,p=0.469752892 RPS6,FC=-0.04,p=0.455560399 ZMYM2,FC=-0.06,p=0.513408539 SLC24A2,FC=0.64,p=0.000956471 PACRGL,FC=-0.34,p=0.005117053 MLLT3,FC=-0.10,p=0.527368681 MLLT3,FC=0.05,p=0.641443981 MLLT3,FC=0.18,p=0.098028799 KIAA1797,FC=0.22,p=0.004594986 PTPLAD2,FC=-0.80,p=6.89e-14 PTPLAD2,FC=0.48,p=0.012108079 IFNB1,FC=-0.24,p=0.191117431 IFNW1,FC=0.28,p=0.09412001 IFNA21,FC=0.12,p=0.539285442 IFNA4,FC=0.42,p=0.047338256 IFNA7,FC=0.27,p=0.125290823 IFNA10,FC=0.34,p=0.045899965 IFNA16,FC=-0.03,p=0.891132397 IFNA17,FC=1.09,p=3.94e-08 IFNA14,FC=1.07,p=7.25e-06 IFNA5,FC=0.63,p=0.003927859 KLHL9,FC=-0.28,p=0.004364713 KLHL9,FC=-0.03,p=0.622385117 IFNA6,FC=-0.16,p=0.464165429 IFNA2,FC=-0.02,p=0.946979896 IFNA8,FC=0.32,p=0.164638947 IFNA1,FC=0.24,p=0.264378976 IFNE,FC=0.49,p=0.009381073 MTAP,FC=0.69,p=5.59e-07 MTAP,FC=-0.05,p=0.740211553 MTAP,FC=0.10,p=0.443123691 MTAP,FC=0.21,p=0.271785004 MTAP,FC=0.73,p=0.001495333 C9orf53,FC=-0.09,p=0.634534955 CDKN2A,FC=1.42,p=1.83e-09 CDKN2A,FC=0.10,p=0.475916419 CDKN2A,FC=1.46,p=3.99e-14 CDKN2BAS,FC=-0.18,p=0.320658794 CDKN2B,FC=-1.56,p=6.08e-19 CDKN2B,FC=-0.00,p=0.985892164 DMRTA1,FC=0.07,p=0.585900889 ELAVL2,FC=0.74,p=0.00027072 ELAVL2,FC=0.48,p=0.018555985 TUSC1,FC=-0.50,p=4.27e-06 C9orf82,FC=-0.17,p=0.177410214 C9orf82,FC=0.17,p=0.064222594 PLAA,FC=-0.60,p=3e-05 PLAA,FC=-0.58,p=1.13e-08 PLAA,FC=0.01,p=0.889230601 IFT74,FC=-0.71,p=8.24e-07 IFT74,FC=-0.27,p=0.015003319 LRRC19,FC=-0.62,p=0.00598988 TEK,FC=0.64,p=0.00587704 TEK,FC=-2.47,p=1.77e-53 C9orf11,FC=-0.44,p=0.076619653 C9orf11,FC=0.05,p=0.771804339 C9orf11,FC=-0.15,p=0.398773674 MOBKL2B,FC=-0.36,p=0.001809571 MOBKL2B,FC=-0.41,p=0.000114945 MOBKL2B,FC=-0.93,p=1.63e-15 MOBKL2B,FC=-0.75,p=2.4e-10 IFNK,FC=0.02,p=0.912211582 C9orf72,FC=-1.58,p=1.62e-20 C9orf72,FC=-1.16,p=1.14e-08 C9orf72,FC=-0.63,p=9.67e-16 LINGO2,FC=0.91,p=2.58e-08 HCG18,FC=0.09,p=0.28557733

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-1.90,p=1.37e-21 C9orf150,FC=-0.61,p=7.97e-07 C9orf150,FC=-1.79,p=3.84e-21 MPDZ,FC=-0.68,p=4.19e-12 MPDZ,FC=-1.52,p=2.28e-13 NFIB,FC=-0.67,p=1.03e-08 NFIB,FC=-0.85,p=2.04e-06 NFIB,FC=-1.23,p=2.87e-21 NFIB,FC=-0.81,p=9.68e-09 NFIB,FC=-1.41,p=2.68e-15 NFIB,FC=-1.35,p=5.19e-07 NFIB,FC=-0.97,p=7.6e-16 NFIB,FC=-1.52,p=3.33e-10 NFIB,FC=-2.00,p=1.75e-12 ZDHHC21,FC=-0.17,p=0.530051626 ZDHHC21,FC=-0.46,p=0.006442004 ZDHHC21,FC=0.47,p=0.050923054 CER1,FC=1.13,p=5.54e-10 FREM1,FC=-1.79,p=1.96e-18 ANKH,FC=-0.51,p=0.002120269 TTC39B,FC=-0.41,p=0.035659829 TTC39B,FC=-0.00,p=0.989733303 SNAPC3,FC=0.16,p=0.166400981 SNAPC3,FC=0.04,p=0.765849903 METTL6,FC=0.34,p=0.052279079 PSIP1,FC=-1.21,p=7.73e-15 PSIP1,FC=-0.27,p=0.143646885 PSIP1,FC=0.08,p=0.559123607 PSIP1,FC=-0.82,p=3.81e-07 C9orf93,FC=-0.44,p=0.011312055 C9orf93,FC=-0.35,p=0.099217827 C9orf93,FC=0.19,p=0.422494113 C9orf93,FC=-0.34,p=0.18282545 C9orf93,FC=0.04,p=0.816098791 C9orf93,FC=0.24,p=0.225006251 BNC2,FC=-0.19,p=0.24088346 BNC2,FC=0.18,p=0.075156844 BNC2,FC=-0.66,p=6.2e-08 BNC2,FC=-0.46,p=8.93e-06 BNC2,FC=0.94,p=5.35e-07 BNC2,FC=-0.75,p=7.8e-05 QDPR,FC=-0.83,p=2.1e-12 CNTLN,FC=-0.44,p=0.022139388 CNTLN,FC=-1.10,p=6.51e-12 CNTLN,FC=-0.07,p=0.720080594 SH3GL2,FC=-2.32,p=6.54e-17 SH3GL2,FC=-0.11,p=0.559476562 ADAMTSL1,FC=0.23,p=0.181447464 ADAMTSL1,FC=-0.73,p=0.000321813 ADAMTSL1,FC=0.85,p=0.001782105 ADAMTSL1,FC=-0.05,p=0.777516468 ADAMTSL1,FC=0.71,p=0.000735659 ADAMTSL1,FC=-0.70,p=0.003191926 FAM154A,FC=0.36,p=0.041207507 RRAGA,FC=-0.36,p=9.63e-08 HAUS6,FC=0.69,p=2.25e-08 HAUS6,FC=0.58,p=0.00064962 HAUS6,FC=0.06,p=0.699811783 PLIN2,FC=-1.38,p=8.17e-13 DENND4C,FC=-0.93,p=1.1e-21 DENND4C,FC=-0.57,p=3.64e-05 DENND4C,FC=-0.97,p=5.41e-19 RPS6,FC=-0.07,p=0.083160983 RPS6,FC=-0.89,p=8.11e-10 RPS6,FC=0.09,p=0.040139465 RPS6,FC=-0.19,p=0.001846206 ZMYM2,FC=-0.18,p=0.034912568 SLC24A2,FC=1.38,p=3.58e-09 PACRGL,FC=-0.86,p=3.17e-08 MLLT3,FC=-0.82,p=1.41e-08 MLLT3,FC=-0.07,p=0.493532097 MLLT3,FC=-0.31,p=0.004840638 KIAA1797,FC=-0.01,p=0.92514243 PTPLAD2,FC=-1.36,p=3.05e-24 PTPLAD2,FC=0.28,p=0.185725939 IFNB1,FC=-0.34,p=0.076865501 IFNW1,FC=0.26,p=0.197369069 IFNA21,FC=-0.02,p=0.923837148 IFNA4,FC=0.46,p=0.0940189 IFNA7,FC=0.46,p=0.025050397 IFNA10,FC=0.67,p=0.000335053 IFNA16,FC=0.52,p=0.002382834 IFNA17,FC=1.80,p=1.75e-15 IFNA14,FC=1.81,p=1.17e-09 IFNA5,FC=1.25,p=8.92e-07 KLHL9,FC=-0.27,p=0.01369599 KLHL9,FC=-0.09,p=0.311419635 IFNA6,FC=-0.01,p=0.955773003 IFNA2,FC=-0.02,p=0.936420103 IFNA8,FC=-0.09,p=0.709181538 IFNA1,FC=-0.07,p=0.776846331 IFNE,FC=1.01,p=1.25e-06 MTAP,FC=1.32,p=5.87e-12 MTAP,FC=-0.21,p=0.326203662 MTAP,FC=-0.11,p=0.579790842 MTAP,FC=0.29,p=0.153626202 MTAP,FC=0.42,p=0.122386337 C9orf53,FC=-0.41,p=0.044630394 CDKN2A,FC=1.72,p=2.78e-06 CDKN2A,FC=0.57,p=0.000472698 CDKN2A,FC=2.37,p=3.68e-22 CDKN2BAS,FC=-0.21,p=0.31678238 CDKN2B,FC=-1.56,p=2.36e-10 CDKN2B,FC=0.39,p=0.121300302 DMRTA1,FC=0.24,p=0.072786333 ELAVL2,FC=0.30,p=0.171068221 ELAVL2,FC=0.12,p=0.633095343 TUSC1,FC=-0.28,p=0.009913318 C9orf82,FC=-0.78,p=2.7e-07 C9orf82,FC=-0.28,p=0.013239217 PLAA,FC=-0.80,p=1.75e-07 PLAA,FC=-0.78,p=3.03e-14 PLAA,FC=-0.19,p=0.060092486 IFT74,FC=-1.32,p=9.68e-10 IFT74,FC=-0.86,p=4.19e-07 LRRC19,FC=-0.64,p=0.003639723 TEK,FC=1.39,p=1.54e-06 TEK,FC=-3.32,p=4.55e-31 C9orf11,FC=-0.94,p=0.001322172 C9orf11,FC=0.32,p=0.086982387 C9orf11,FC=-0.26,p=0.157533082 MOBKL2B,FC=-0.00,p=0.991245887 MOBKL2B,FC=-0.12,p=0.267540105 MOBKL2B,FC=-1.22,p=7.23e-22 MOBKL2B,FC=-0.86,p=1.38e-11 IFNK,FC=-0.31,p=0.252926668 C9orf72,FC=-1.60,p=2.31e-13 C9orf72,FC=-1.21,p=3.45e-07 C9orf72,FC=-0.53,p=3.14e-06 LINGO2,FC=1.41,p=3.45e-16 HCG18,FC=-0.31,p=0.000633417


        Stanford (GSE3398)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-2.27,p=2.88e-05 MPDZ,FC=-0.28,p=0.521087443 NFIB,FC=-0.36,p=0.471654462 ANKH,FC=-0.08,p=0.833757351 ANKH,FC=0.06,p=0.848119638 ANKH,FC=-0.03,p=0.944753145 ANKH,FC=0.33,p=0.272351859 ANKH,FC=0.11,p=0.741146483 ANKH,FC=0.19,p=0.462851651 ANKH,FC=-0.17,p=0.718586977 SNAPC3,FC=0.86,p=0.009130863 PSIP1,FC=-0.15,p=0.541711478 SH3GL2,FC=-1.07,p=0.00811522 RPS6,FC=0.27,p=0.396860946 RPS6,FC=0.76,p=0.048443845 RPS6,FC=0.52,p=0.299918863 RPS6,FC=-0.39,p=0.396946173 MLLT3,FC=-0.63,p=0.17103415 CDKN2A,FC=0.73,p=0.175486161 TEK,FC=-2.08,p=4.84e-09

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-1.96,p=0.008087804 MPDZ,FC=-0.19,p=0.613966473 NFIB,FC=-0.66,p=0.072629984 ANKH,FC=0.27,p=0.590929458 ANKH,FC=0.38,p=0.241338839 ANKH,FC=1.02,p=0.036833406 ANKH,FC=0.75,p=0.040461623 ANKH,FC=0.21,p=0.564539606 ANKH,FC=0.25,p=0.447703084 ANKH,FC=0.53,p=0.367600454 SNAPC3,FC=0.55,p=0.037552968 PSIP1,FC=0.08,p=0.773304164 SH3GL2,FC=-1.11,p=0.069836553 RPS6,FC=-0.01,p=0.962589775 RPS6,FC=0.02,p=0.957598406 RPS6,FC=0.44,p=0.379624562 RPS6,FC=-0.95,p=0.046404196 MLLT3,FC=-1.17,p=0.011571601 CDKN2A,FC=-0.33,p=0.358907953 TEK,FC=-2.45,p=5.37e-08


        Agilent_HS_21.6K (GSE11969)
        Adenocarcinoma      Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-0.02,p=0.216991645 TYRP1,FC=-0.31,p=7.43e-05 C9orf150,FC=-0.05,p=0.488901004 MPDZ,FC=-0.05,p=0.424783195 NFIB,FC=-0.09,p=0.327704354 CER1,FC=0.04,p=0.462957191 SNAPC3,FC=-0.07,p=0.089637841 PSIP1,FC=-0.03,p=0.772109488 PSIP1,FC=0.01,p=0.70863206 BNC2,FC=0.02,p=0.587862226 SH3GL2,FC=-0.00,p=0.915429454 ADAMTSL1,FC=0.05,p=0.106538891 RRAGA,FC=-0.23,p=0.000111296 RPS6,FC=0.32,p=0.000130242 SLC24A2,FC=0.04,p=0.013416684 MLLT3,FC=0.08,p=0.132782591 KIAA1797,FC=-0.00,p=0.990791658 IFNB1,FC=0.05,p=0.31164792 IFNW1,FC=0.20,p=0.00274006 IFNA21,FC=0.04,p=0.767421942 IFNA4,FC=0.11,p=0.190259827 IFNA7,FC=0.04,p=0.391295085 IFNA10,FC=0.19,p=0.002145156 IFNA16,FC=0.01,p=0.647017313 IFNA17,FC=0.15,p=0.001018994 IFNA14,FC=-0.16,p=0.022189958 IFNA5,FC=0.09,p=0.024751632 KLHL9,FC=-0.13,p=0.033975471 IFNA6,FC=-0.00,p=0.989489706 IFNA2,FC=0.06,p=0.063919189 IFNA8,FC=0.06,p=0.461600667 MTAP,FC=0.03,p=0.598355909 CDKN2A,FC=-0.02,p=0.776640649 CDKN2A,FC=0.29,p=0.001986532 CDKN2B,FC=-0.40,p=0.035328341 CDKN2B,FC=-0.15,p=0.010049209 DMRTA1,FC=-0.05,p=0.508134671 ELAVL2,FC=0.07,p=0.005379548 C9orf82,FC=-0.01,p=0.902287448 PLAA,FC=0.01,p=0.805120328 LRRC19,FC=-0.04,p=0.669046831 TEK,FC=0.07,p=0.44107866 MOBKL2B,FC=0.00,p=0.938296132 MOBKL2B,FC=-0.02,p=0.328465259 IFNK,FC=-0.00,p=0.965134111 C9orf72,FC=-0.09,p=0.064639913 C9orf72,FC=-0.02,p=0.461655341

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      TYRP1,FC=-0.03,p=0.15219289 TYRP1,FC=-0.40,p=1.83e-09 C9orf150,FC=-0.15,p=0.036290743 MPDZ,FC=-0.12,p=0.010444741 NFIB,FC=-0.29,p=0.000186133 CER1,FC=0.03,p=0.477375356 SNAPC3,FC=-0.04,p=0.264360928 PSIP1,FC=0.01,p=0.901431497 PSIP1,FC=-0.00,p=0.996630467 BNC2,FC=0.02,p=0.505952519 SH3GL2,FC=-0.03,p=0.138699129 ADAMTSL1,FC=0.04,p=0.13785768 RRAGA,FC=-0.25,p=0.000155296 RPS6,FC=0.29,p=7.73e-05 SLC24A2,FC=0.04,p=0.216961529 MLLT3,FC=0.02,p=0.688547882 KIAA1797,FC=-0.11,p=0.174080486 IFNB1,FC=0.04,p=0.405404875 IFNW1,FC=0.20,p=0.006483725 IFNA21,FC=0.02,p=0.905864273 IFNA4,FC=0.14,p=0.149645348 IFNA7,FC=0.04,p=0.468462919 IFNA10,FC=0.15,p=0.027583985 IFNA16,FC=0.01,p=0.746424537 IFNA17,FC=0.12,p=0.009472787 IFNA14,FC=-0.22,p=0.003682695 IFNA5,FC=0.08,p=0.026262684 KLHL9,FC=-0.16,p=0.029536326 IFNA6,FC=-0.00,p=0.976804379 IFNA2,FC=0.06,p=0.063499935 IFNA8,FC=0.07,p=0.405196005 MTAP,FC=0.02,p=0.720292962 CDKN2A,FC=0.00,p=0.950460067 CDKN2A,FC=0.35,p=0.000311672 CDKN2B,FC=-0.34,p=0.117352975 CDKN2B,FC=-0.09,p=0.324697735 DMRTA1,FC=-0.09,p=0.252342588 ELAVL2,FC=0.05,p=0.07360296 C9orf82,FC=-0.01,p=0.672124722 PLAA,FC=0.01,p=0.647087375 LRRC19,FC=0.01,p=0.949182857 TEK,FC=0.03,p=0.469880768 MOBKL2B,FC=-0.03,p=0.488032405 MOBKL2B,FC=-0.03,p=0.082460898 IFNK,FC=-0.00,p=0.998905457 C9orf72,FC=-0.07,p=0.351651993 C9orf72,FC=-0.02,p=0.357603553


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    Copy Number Alteration Data        (help)
            ( red: amplification / green : deletion)

         Adenocarcinoma          Squamous Cell Carcinoma
        Meyerson Adenocarcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE17958 Squamous Cell Carcinoma (SNP)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

        GSE12280_SGOL (SCC / aCGH)      Save as a PNG file. Save as a PDF file. Save as a PS file.
      

      

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    miRNA Expression Data        (help)
            ( red: up-regulation / green : down-regulation)

         Adenocarcinoma          Squamous Cell Carcinoma
        GSE15201
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-491,Mean=0.26 hsa-miR-31,Mean=0.12

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-miR-491,Mean=-0.20 hsa-miR-31,Mean=0.39

        GSE18692
        Adenocarcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-491,Mean=0.11 hsa-mir-31,Mean=0.81

        Squamous Cell Carcinoma       Save as a PNG file. Save as a PDF file. Save as a PS file.
      array picturehsa-mir-491,Mean=-0.03 hsa-mir-31,Mean=2.11

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    Paired (U133A/aCGH) AD Sample Data        (help) (PubMed)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

TYRP1,FC=-0.81,p=5.33e-08 MPDZ,FC=-1.19,p=5.51e-20 MPDZ,FC=-0.79,p=3.61e-19 NFIB,FC=-0.15,p=0.060620849 NFIB,FC=-0.89,p=1.71e-28 NFIB,FC=1.08,p=2.17e-08 NFIB,FC=-0.99,p=5.03e-30 NFIB,FC=-0.54,p=2.63e-06 NFIB,FC=0.07,p=0.74300681 NFIB,FC=-0.58,p=2.59e-11 CER1,FC=-0.43,p=1.4e-10 ANKH,FC=0.29,p=0.114824286 SNAPC3,FC=0.07,p=0.24772476 SNAPC3,FC=0.68,p=1.27e-16 PSIP1,FC=0.09,p=0.319517927 PSIP1,FC=-0.60,p=4.01e-13 PSIP1,FC=-1.11,p=3.46e-45 BNC2,FC=-0.85,p=8.9e-28 CNTLN,FC=-1.00,p=2.57e-12 SH3GL2,FC=-1.83,p=1.46e-24 RRAGA,FC=-0.46,p=6.66e-16 HAUS6,FC=1.23,p=3.35e-11 PLIN2,FC=-1.14,p=1.25e-22 DENND4C,FC=-0.27,p=0.000299128 RPS6,FC=0.10,p=0.001073918 RPS6,FC=0.30,p=1.23e-13 RPS6,FC=0.14,p=1.44e-08 SLC24A2,FC=-0.56,p=4.27e-07 MLLT3,FC=0.13,p=0.10225032 MLLT3,FC=0.03,p=0.710745248 KIAA1797,FC=0.06,p=0.290430718 IFNB1,FC=-0.76,p=6.49e-10 IFNW1,FC=-0.06,p=0.617890094 IFNA21,FC=-0.85,p=4.83e-06 IFNA4,FC=-0.88,p=2.75e-09 IFNA7,FC=-0.66,p=1.45e-12 IFNA10,FC=-0.68,p=1.24e-07 IFNA16,FC=-0.75,p=1.72e-11 IFNA17,FC=-0.78,p=6.7e-16 IFNA14,FC=-0.69,p=1.28e-12 IFNA5,FC=-0.76,p=1.16e-16 KLHL9,FC=-0.20,p=0.000442354 KLHL9,FC=-0.15,p=0.082528407 IFNA6,FC=-0.16,p=0.300633904 IFNA2,FC=-0.20,p=0.243319324 IFNA8,FC=0.00,p=0.989353554 IFNA1,FC=-0.77,p=9.55e-06 MTAP,FC=0.45,p=0.000174684 MTAP,FC=1.22,p=2.16e-09 MTAP,FC=1.63,p=7.74e-15 MTAP,FC=-1.08,p=4.27e-20 C9orf53,FC=-1.19,p=6.13e-19 CDKN2A,FC=0.74,p=9.29e-07 CDKN2A,FC=1.04,p=4.88e-14 CDKN2A,FC=0.14,p=0.285266025 CDKN2B,FC=1.16,p=4.02e-09 ELAVL2,FC=-0.29,p=0.086288468 C9orf82,FC=0.44,p=1.67e-08 PLAA,FC=0.12,p=0.14999433 PLAA,FC=0.20,p=0.064111588 IFT74,FC=0.54,p=0.006285864 IFT74,FC=-0.09,p=0.608106545 LRRC19,FC=-1.06,p=1.8e-09 TEK,FC=-0.85,p=1.56e-10 TEK,FC=-2.57,p=4.36e-66 MOBKL2B,FC=-0.34,p=1.35e-06

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    Array CGH Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

RP11-352F21, 0/50, 0 RP11-352F21, 13/50, 0.26 RP11-446F13, 0/50, 0 RP11-446F13, 19/50, 0.38 RP11-187K14, 2/50, 0.04 RP11-187K14, 9/50, 0.18 RP11-413D24, 2/50, 0.04 RP11-413D24, 24/50, 0.48 RP11-408A13, 1/50, 0.02 RP11-408A13, 17/50, 0.34 RP11-490C5, 1/50, 0.02 RP11-490C5, 7/50, 0.14 RP11-109M15, 2/50, 0.04 RP11-109M15, 21/50, 0.42 RP11-132E11, 1/50, 0.02 RP11-132E11, 3/50, 0.06 RP11-123J20, 1/50, 0.02 RP11-123J20, 18/50, 0.36 RP11-503K16, 2/50, 0.04 RP11-503K16, 13/50, 0.26 RP11-513M16, 1/50, 0.02 RP11-513M16, 6/50, 0.12 RP11-15P13, 1/50, 0.02 RP11-15P13, 6/50, 0.12 RP11-113D19, 2/50, 0.04 RP11-113D19, 17/50, 0.34 RP11-495L19, 4/50, 0.08 RP11-495L19, 12/50, 0.24 RP11-33K8, 0/50, 0 RP11-33K8, 12/50, 0.24 RP11-468C2, 1/50, 0.02 RP11-468C2, 11/50, 0.22 RP11-33G16, 1/50, 0.02 RP11-33G16, 16/50, 0.32 RP11-5P15, 2/50, 0.04 RP11-5P15, 11/50, 0.22 RP11-27J8, 3/50, 0.06 RP11-27J8, 15/50, 0.3 RP11-20P5, 3/50, 0.06 RP11-20P5, 13/50, 0.26 RP11-264J11, 5/50, 0.1 RP11-264J11, 17/50, 0.34 RP11-383F6, 3/50, 0.06 RP11-383F6, 21/50, 0.42 RP11-48L13, 3/50, 0.06 RP11-48L13, 10/50, 0.2

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    CGH Minimal Deletion Region Data        (help)      Save as a PNG file. Save as a PDF file. Save as a PS file.
            ( red: amplification / green : deletion)

PMID=12599234 PMID=14581340 PMID=14970871 PMID=15093586 PMID=15548372 PMID=15983384

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    LOH Frequency Data        (help)       Save as a PNG file. Save as a PDF file. Save as a PS file.

Our unpublished data D9S171, 5/40, 13% Our unpublished data D9S169, 23/27, 85% Our unpublished data D9S1853, 11/36, 31% D9S285, 13/17, 76% D9S157, 13/17, 76% D9S171, 11/14, 79% PMID=10987304 D9S161, 12/16, 75% D9S254, 22/31, 71% PMID=11980668 D9S251, 16/33, 48% D9S925, 5/24, 21% D9S925, 13/27, 48% D9S942, 7/25, 28% PMID=15900585 D9S942, 8/25, 32%

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