IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene COL3A1 Ensembl ENSG00000168542 Chromosome 2 Start 189547344 End 189585717
Description Collagen alpha-1(III) chain Precursor [Source:UniProtKB/Swiss-Prot;Acc:P02461]

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  32488_at  1.72  9.19e-11  1.38e-9  2.19  4.22e-10  4.99e-9
 HG_U133A  201852_x_at  1.84  2.40e-43  8.14e-42  -2.11  9.67e-39  1.84e-38
 HG_U133A  211161_s_at  1.72  1.03e-44  3.87e-43  -3.40  7.70e-82  3.25e-81
 HG_U133A  215076_s_at  1.71  1.26e-39  3.38e-38  -4.21  4.29e-81  1.79e-80
 HG_U133A  215077_at  0.75  4.07e-5  8.88e-5  1.94  9.13e-24  1.40e-23
 HG_U133_Plus2  201852_x_at  1.75  4.62e-20  1.09e-18  2.00  2.48e-19  3.20e-18
 HG_U133_Plus2  211161_s_at  1.87  8.45e-28  4.57e-26  2.00  2.21e-22  4.03e-21
 HG_U133_Plus2  215076_s_at  1.56  4.59e-21  1.20e-19  1.52  9.88e-14  6.69e-13
 HG_U133_Plus2  215077_at  0.99  6.16e-6  2.44e-5  0.53  5.23e-2  7.46e-2
 HG_U133_Plus2  232458_at  1.34  4.53e-8  2.53e-7  1.08  3.57e-5  8.49e-5
 Stanford  585  2.83  6.37e-5  2.38e-3  2.47  1.14e-3  1.54e-2
 Stanford  8363  2.99  3.25e-5  1.56e-3  2.27  3.35e-3  3.22e-2
 Stanford  9142  2.99  3.25e-5  1.56e-3  2.27  3.35e-3  3.22e-2
 Stanford  11557  1.73  1.72e-2  9.10e-2  1.70  2.51e-2  1.16e-1
 Stanford  13435  2.67  7.21e-5  2.60e-3  2.45  6.90e-4  1.08e-2
 Agilent_HS_21.6K  5326  0.64  2.76e-4  2.73e-3  0.78  4.36e-7  7.68e-6

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  201852_x_at  0.10  8.01e-1  9.82e-1  -0.36  2.43e-1  1.00e+0
 HG_U133A  211161_s_at  0.09  8.11e-1  9.83e-1  -0.31  3.11e-1  1.00e+0
 HG_U133A  215076_s_at  0.22  5.93e-1  9.51e-1  -0.26  3.98e-1  1.00e+0
 HG_U133A  215077_at  -0.91  9.53e-2  7.69e-1  0.37  4.50e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 32488_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 201852_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 211161_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 215076_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 215077_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 201852_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 211161_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 215076_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 215077_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 232458_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 585    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 8363    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 9142    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 11557    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 13435    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 5326    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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Cancer Gene Index        (help)

If 0 entry was found, please remove the search key "lung cancer".
Keyword DiseaseData Statement PubMed Organism
col3a1 advanced carcinoma The most prominent differences between advanced and local adenocarcinoma were upregulation of COL3A1, CFGR, and MET in advanced carcinoma, and downregulation of HGFAC, FZD3, and BFL1 in the same tumors. 11454421 Human
col3a1 tumors The most prominent differences between advanced and local adenocarcinoma were upregulation of COL3A1, CFGR, and MET in advanced carcinoma, and downregulation of HGFAC, FZD3, and BFL1 in the same tumors. 11454421 Human
col3a1 adenocarcinoma The most prominent differences between advanced and local adenocarcinoma were upregulation of COL3A1, CFGR, and MET in advanced carcinoma, and downregulation of HGFAC, FZD3, and BFL1 in the same tumors. 11454421 Human

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