IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene PLOD2 Ensembl ENSG00000152952 Chromosome 3 Start 147269922 End 147361972
Description Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2 Precursor (EC 1.14.11.4)(Lysyl hydroxylase 2)(LH2) [Source:UniProtKB/Swiss-Prot;Acc:O00469]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 9082
     Entrez Gene : 5352
     UCSC : uc003evr.1
     GeneCards : 9082
     RefSeq : NM_000935
     CCDS : CCDS3131.1
     Uniprot : O00469
     Interpro : O00469
     OMIM : 601865
     GeneTests : PLOD2
     CGAP : PLOD2
     PMID : 9054364

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  34795_at  1.14  8.86e-10  1.11e-8  1.53  7.30e-13  1.50e-11
 HG_U133A  202619_s_at  0.90  3.40e-11  1.35e-10  0.72  7.13e-13  9.35e-13
 HG_U133A  202620_s_at  1.40  3.02e-25  3.42e-24  -0.46  1.67e-10  2.11e-10
 HG_U133_Plus2  202619_s_at  1.19  1.72e-12  1.72e-11  1.64  9.94e-19  1.19e-17
 HG_U133_Plus2  202620_s_at  1.40  1.64e-19  3.66e-18  1.59  2.83e-22  5.11e-21
 Stanford  10097  1.27  3.29e-2  1.39e-1  1.65  4.73e-3  4.10e-2
 Stanford  16816  1.20  2.23e-2  1.08e-1  1.51  7.61e-3  5.71e-2
 Agilent_HS_21.6K  20147  0.21  1.25e-1  2.74e-1  0.41  5.28e-3  2.14e-2

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  202619_s_at  -0.18  7.01e-1  9.68e-1  0.13  6.84e-1  1.00e+0
 HG_U133A  202620_s_at  0.03  9.54e-1  9.98e-1  0.33  3.38e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 34795_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 202619_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 202620_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 202619_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 202620_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 10097    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 16816    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 20147    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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