IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene PGAP3 Ensembl ENSG00000161395 Chromosome 17 Start 35080902 End 35097836
Description Post-GPI attachment to proteins factor 3 Precursor (PER1-like domain-containing protein 1)(Gene coamplified with ERBB2 protein)(hCOS16) [Source:UniProtKB/Swiss-Prot;Acc:Q96FM1]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 23719
     Entrez Gene : 93210
     UCSC : uc002hsj.2
     GeneCards : 23719
     RefSeq : NM_033419
     CCDS : CCDS32641.1
     Uniprot : Q96FM1
     Interpro : Q96FM1
     OMIM : 611801
     GeneTests : PGAP3
     CGAP : PGAP3
     PMID : 15010812

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  221811_at  0.27  2.91e-3  4.95e-3  -0.15  1.15e-1  1.21e-1
 HG_U133A  55616_at  -0.07  2.76e-1  3.28e-1  -1.93  5.28e-68  1.65e-67
 HG_U133_Plus2  221811_at  0.44  1.19e-5  4.48e-5  0.23  1.16e-1  1.54e-1
 HG_U133_Plus2  55616_at  0.39  3.99e-4  1.13e-3  0.37  2.29e-3  4.16e-3

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  221811_at  -0.46  1.94e-1  8.26e-1  -0.03  8.67e-1  1.00e+0
 HG_U133A  55616_at  -0.03  8.59e-1  9.89e-1  -0.01  9.54e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U133A - 221811_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 55616_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 221811_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 55616_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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