IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene PTRF Ensembl ENSG00000177469 Chromosome 17 Start 37808001 End 37828800
Description Polymerase I and transcript release factor [Source:UniProtKB/Swiss-Prot;Acc:Q6NZI2]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 9688
     Entrez Gene : 284119
     UCSC : uc002hzo.2
     GeneCards : 9688
     RefSeq : NM_012232
     CCDS : CCDS11425.1
     Uniprot : Q6NZI2
     Interpro : Q6NZI2
     OMIM : 603198
     GeneTests : PTRF
     CGAP : PTRF
     PMID : 9582279

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  34320_at  -1.54  3.44e-30  9.25e-28  -1.55  1.06e-16  4.85e-15
 HG_U95  36369_at  -1.18  8.63e-13  1.89e-11  -0.84  4.01e-6  2.21e-5
 HG_U133A  208789_at  -1.75  5.30e-77  8.92e-75  -4.90  2.47e-162  1.40e-160
 HG_U133A  208790_s_at  -1.34  4.20e-32  7.52e-31  -0.57  1.36e-9  1.69e-9
 HG_U133_Plus2  1557938_s_at  -1.09  1.69e-13  1.91e-12  -0.42  5.55e-3  9.46e-3
 HG_U133_Plus2  208789_at  -1.37  8.69e-25  3.38e-23  -0.91  3.00e-10  1.36e-9
 HG_U133_Plus2  208790_s_at  -1.71  4.14e-31  3.23e-29  -1.57  1.00e-16  9.62e-16
 Stanford  7300  -1.14  1.47e-2  8.23e-2  -1.42  6.74e-3  5.27e-2
 Stanford  9263  -1.30  2.86e-4  6.48e-3  -1.40  1.51e-3  1.86e-2
 Agilent_HS_21.6K  19172  -0.37  7.47e-5  9.42e-4  -0.35  9.56e-5  7.64e-4

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  208789_at  0.19  4.45e-1  9.14e-1  -0.02  8.90e-1  1.00e+0
 HG_U133A  208790_s_at  0.36  4.34e-1  9.13e-1  -0.11  5.18e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 34320_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U95 - 36369_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 208789_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 208790_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 1557938_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 208789_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 208790_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 7300    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 9263    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 19172    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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