IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene PSG3 Ensembl ENSG00000221826 Chromosome 19 Start 47917635 End 47936508
Description Pregnancy-specific beta-1-glycoprotein 3 Precursor (PSBG-3)(Carcinoembryonic antigen SG5) [Source:UniProtKB/Swiss-Prot;Acc:Q16557]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 9520
     Entrez Gene : 5671
     UCSC : uc002oue.2
     GeneCards : 9520
     RefSeq : NM_021016
     CCDS : CCDS12611.1
     Uniprot : Q16557
     Interpro : Q16557
     OMIM : 176392
     GeneTests : PSG3
     CGAP : PSG3
     PMID : 2341148

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  40857_f_at  -0.46  4.76e-2  8.86e-2  -0.74  1.58e-2  3.42e-2
 HG_U133A  203399_x_at  -0.22  8.08e-2  1.08e-1  5.45  1.85e-119  2.20e-118
 HG_U133A  211741_x_at  -0.37  3.16e-3  5.36e-3  1.89  6.01e-49  1.35e-48
 HG_U133A  215821_x_at  0.27  3.15e-4  6.14e-4  -0.08  2.62e-1  2.71e-1
 HG_U133_Plus2  203399_x_at  0.81  1.22e-4  3.80e-4  1.32  1.55e-9  6.46e-9
 HG_U133_Plus2  211741_x_at  0.36  9.18e-2  1.42e-1  0.76  1.50e-3  2.80e-3
 HG_U133_Plus2  215821_x_at  0.71  8.97e-7  4.08e-6  0.53  7.68e-4  1.50e-3
 Stanford  10085  1.54  2.51e-4  5.93e-3  1.57  7.36e-3  5.59e-2
 Agilent_HS_21.6K  19395  0.17  2.21e-2  8.19e-2  0.17  1.46e-2  4.81e-2

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  203399_x_at  0.57  3.01e-1  8.75e-1  -0.23  2.90e-1  1.00e+0
 HG_U133A  211741_x_at  0.28  4.88e-1  9.26e-1  -0.03  9.29e-1  1.00e+0
 HG_U133A  215821_x_at  -0.05  8.58e-1  9.89e-1  -0.11  4.60e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 40857_f_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 203399_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 211741_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 215821_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 203399_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 211741_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 215821_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 10085    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 19395    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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