IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene BCAT2 Ensembl ENSG00000105552 Chromosome 19 Start 53990134 End 54006113
Description Branched-chain-amino-acid aminotransferase, mitochondrial Precursor (BCAT(m))(EC 2.6.1.42)(Placental protein 18)(PP18) [Source:UniProtKB/Swiss-Prot;Acc:O15382]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 977
     Entrez Gene : 587
     UCSC : uc002pkr.2
     GeneCards : 977
     RefSeq : NM_001190
     CCDS : CCDS12735.1
     Uniprot : O15382
     Interpro : O15382
     OMIM : 113530
     GeneTests : BCAT2
     CGAP : BCAT2
     PMID : 9165094

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  41111_at  -0.12  4.79e-1  5.84e-1  -0.18  2.76e-1  3.78e-1
 HG_U133A  203576_at  0.10  1.78e-1  2.21e-1  5.34  5.47e-200  1.74e-197
 HG_U133A  215654_at  0.49  5.80e-5  1.24e-4  2.75  1.17e-64  3.44e-64
 HG_U133_Plus2  203576_at  0.32  5.50e-5  1.83e-4  0.42  1.32e-5  3.32e-5
 HG_U133_Plus2  215654_at  0.54  2.50e-3  5.92e-3  0.15  4.52e-1  5.13e-1
 Stanford  12364  0.07  8.53e-1  9.20e-1  -0.28  3.29e-1  5.69e-1
 Agilent_HS_21.6K  4627  -0.08  1.13e-1  2.56e-1  -0.08  6.33e-2  1.47e-1

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  203576_at  0.16  3.85e-1  8.96e-1  0.08  6.18e-1  1.00e+0
 HG_U133A  215654_at  0.56  1.82e-1  8.22e-1  0.50  5.40e-2  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 41111_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 203576_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 215654_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 203576_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 215654_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 12364    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 4627    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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