IGDB.NSCLC Gene View
 
Gene Information        (help)
Gene SYT5 Ensembl ENSG00000129990 Chromosome 19 Start 60376281 End 60383532
Description Synaptotagmin-5 (Synaptotagmin V)(SytV) [Source:UniProtKB/Swiss-Prot;Acc:O00445]
GENE RESOURCES :NUCLEOTIDE SEQUENCES :PROTEIN RESOURCES :CLINICAL RESOURCES :REFERENCES :
     HGNC : 11513
     Entrez Gene : 6861
     UCSC : uc002qjn.1
     GeneCards : 11513
     RefSeq : NM_003180
     CCDS : CCDS12919.1
     Uniprot : O00445
     Interpro : O00445
     OMIM : 600782
     GeneTests : SYT5
     CGAP : SYT5
     PMID : 9177789

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Microarray Gene Expression Fold Change Result        (help)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background : these probesets might have mapping problems. ref 1, ref 2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U95  39242_at  0.40  1.93e-4  7.34e-4  0.45  5.34e-3  1.34e-2
 HG_U133A  206161_s_at  0.13  1.39e-1  1.76e-1  -0.74  1.97e-7  2.36e-7
 HG_U133A  206162_x_at  0.14  3.95e-1  4.50e-1  4.86  1.05e-102  7.67e-102
 HG_U133_Plus2  206161_s_at  0.31  4.52e-2  7.73e-2  0.46  5.74e-3  9.76e-3
 HG_U133_Plus2  206162_x_at  0.20  3.32e-1  4.21e-1  0.43  6.45e-2  9.02e-2
 Stanford  18423  0.40  1.48e-1  3.22e-1  0.59  1.44e-1  3.47e-1
 Agilent_HS_21.6K  6794  0.12  4.78e-1  6.56e-1  0.13  4.64e-1  6.18e-1

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Adjuvant Cisplatin/vinorelbine Treatment vs Observation Result        (help) (Pubmed)
( red: up-regulation / green : down-regulation when p value < 0.01)
( gray background color : the mapping problems of probeset. ref_1, ref_2)
Chip Type Probeset Adenocarcinoma Squamous Cell Carcinoma
Fold Change p value q value Fold Change p value q value
 HG_U133A  206161_s_at  0.01  9.60e-1  9.98e-1  -0.06  7.37e-1  1.00e+0
 HG_U133A  206162_x_at  -0.40  4.39e-1  9.13e-1  0.37  2.06e-1  1.00e+0

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Microarray Sample Data        (help)
( The log2 value of tumor samples )
(Average : Average log2 value from Normal Samples.)
        HG_U95 - 39242_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 206161_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133A - 206162_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 206161_s_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        HG_U133_Plus2 - 206162_x_at    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Stanford - 18423    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

        Agilent_HS_21.6K - 6794    (back)       Save as a PNG file. Save as a PDF file. Save as a PS file.
Gene expression figure

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